Wall clock time and date at job start Tue Mar 31 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34453 * 125.78388 * 2 1 4 4 C 1.37832 * 107.42189 * 180.14493 * 3 2 1 5 5 C 1.47747 * 126.37234 * 179.87126 * 4 3 2 6 6 N 1.29789 * 123.10464 * 359.73481 * 5 4 3 7 7 C 1.47597 * 108.42503 * 179.58299 * 6 5 4 8 8 C 1.54820 * 102.00842 * 344.92892 * 7 6 5 9 9 H 1.08994 * 111.07407 * 265.47326 * 8 7 6 10 10 C 1.52998 * 111.03871 * 141.53649 * 8 7 6 11 11 N 1.46498 * 109.47005 * 186.55443 * 10 8 7 12 12 C 1.36935 * 119.99874 * 269.72285 * 11 10 8 13 13 H 1.07996 * 120.00392 * 16.03616 * 12 11 10 14 14 C 1.38814 * 120.00054 * 196.03167 * 12 11 10 15 15 N 1.31622 * 119.99955 * 22.38047 * 14 12 11 16 16 Si 1.86799 * 120.00220 * 202.37684 * 14 12 11 17 17 H 1.48502 * 109.47149 * 60.00051 * 16 14 12 18 18 H 1.48503 * 109.47409 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47185 * 300.00236 * 16 14 12 20 20 C 1.46499 * 120.00326 * 90.00327 * 11 10 8 21 21 C 1.50696 * 109.47629 * 84.01615 * 20 11 10 22 22 O 1.20833 * 119.99607 * 0.02562 * 21 20 11 23 23 O 1.34229 * 120.00425 * 180.02562 * 21 20 11 24 24 O 1.34939 * 123.09767 * 179.71169 * 5 4 3 25 25 C 1.41143 * 107.24494 * 359.60594 * 4 3 2 26 26 N 1.30510 * 108.06795 * 0.24221 * 25 4 3 27 27 H 1.09007 * 109.47129 * 270.26331 * 1 2 3 28 28 H 1.08999 * 109.47439 * 30.26777 * 1 2 3 29 29 H 1.08997 * 109.46999 * 150.27393 * 1 2 3 30 30 H 1.07994 * 126.29289 * 0.02562 * 3 2 1 31 31 H 1.08995 * 110.92180 * 226.75392 * 7 6 5 32 32 H 1.08994 * 110.91834 * 103.10800 * 7 6 5 33 33 H 1.08999 * 109.47208 * 66.55597 * 10 8 7 34 34 H 1.08998 * 109.47707 * 306.55369 * 10 8 7 35 35 H 0.96996 * 119.99937 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47140 * 204.02555 * 20 11 10 37 37 H 1.09005 * 109.46817 * 324.01680 * 20 11 10 38 38 H 0.96699 * 116.99805 * 180.02562 * 23 21 20 39 39 H 1.08005 * 125.96951 * 180.20467 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0907 0.0000 4 6 3.5594 0.6565 -0.0033 5 6 4.7657 1.5096 -0.0072 6 7 4.7167 2.8065 -0.0130 7 6 6.0984 3.3255 -0.0052 8 6 6.9113 2.0716 0.3996 9 1 7.0852 2.0477 1.4753 10 6 8.2323 2.0016 -0.3691 11 7 8.8993 0.7300 -0.0789 12 6 9.7753 0.6401 0.9697 13 1 9.7858 1.4052 1.7318 14 6 10.6499 -0.4347 1.0533 15 7 10.9645 -1.1129 -0.0300 16 14 11.3804 -0.9183 2.7031 17 1 10.2873 -1.2714 3.6441 18 1 12.2770 -2.0885 2.5236 19 1 12.1583 0.2208 3.2530 20 6 8.6338 -0.4438 -0.9143 21 6 9.5160 -0.4015 -2.1353 22 8 10.2877 0.5151 -2.2915 23 8 9.4445 -1.3818 -3.0494 24 8 6.0200 1.0120 -0.0047 25 6 3.5319 -0.7546 0.0039 26 7 2.2835 -1.1351 0.0059 27 1 -0.3634 0.0047 1.0277 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5096 30 1 1.9189 2.1183 0.0004 31 1 6.2122 4.1185 0.7340 32 1 6.3887 3.6744 -0.9962 33 1 8.8749 2.8271 -0.0631 34 1 8.0345 2.0723 -1.4387 35 1 11.5753 -1.8641 0.0285 36 1 8.8439 -1.3496 -0.3454 37 1 7.5879 -0.4421 -1.2214 38 1 10.0303 -1.3112 -3.8155 39 1 4.3935 -1.4059 0.0067 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608107034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:38 Heat of formation + Delta-G solvation = -14.655656 kcal Electronic energy + Delta-G solvation = -25552.220231 eV Core-core repulsion = 21690.780307 eV Total energy + Delta-G solvation = -3861.439924 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.36292 -41.66839 -40.54380 -37.58672 -36.28762 -34.55312 -34.34757 -33.75966 -32.27615 -30.67982 -29.09029 -27.97939 -26.77087 -24.44563 -23.46694 -22.77096 -21.85395 -21.69221 -20.70619 -18.80111 -18.52385 -18.39753 -17.73846 -17.03253 -16.98562 -16.47188 -16.42952 -16.00458 -15.71451 -15.29666 -15.26344 -15.08009 -14.65605 -14.00714 -13.81204 -13.76568 -13.57940 -13.41333 -13.26013 -13.12627 -12.89707 -12.61459 -12.47596 -12.28848 -12.08623 -12.00225 -11.84575 -11.79547 -11.32211 -11.01897 -10.57108 -10.52146 -10.40290 -9.23082 -9.00902 -7.96213 -5.30027 0.46558 1.05906 1.49351 1.51087 1.52532 1.58818 1.98722 2.14616 2.42232 2.47490 2.76545 3.21047 3.22991 3.50988 3.66681 3.91141 3.95350 4.06866 4.20240 4.25448 4.49612 4.54975 4.61434 4.63082 4.70832 4.75830 4.77360 4.85860 4.99354 5.12281 5.15892 5.21757 5.42173 5.56467 5.61758 5.95573 6.11366 6.19954 6.54882 6.85381 7.00432 7.57385 7.77623 8.15704 9.12946 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.003865 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.462288 B = 7243.218049 C = 7365.750084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.363 5.363 3 C 0.139 3.861 4 C -0.231 4.231 5 C 0.381 3.619 6 N -0.571 5.571 7 C 0.006 3.994 8 C 0.044 3.956 9 H 0.084 0.916 10 C 0.158 3.842 11 N -0.574 5.574 12 C -0.267 4.267 13 H 0.085 0.915 14 C -0.047 4.047 15 N -0.929 5.929 16 Si 0.971 3.029 17 H -0.276 1.276 18 H -0.298 1.298 19 H -0.280 1.280 20 C 0.197 3.803 21 C 0.481 3.519 22 O -0.557 6.557 23 O -0.534 6.534 24 O -0.340 6.340 25 C 0.085 3.915 26 N -0.324 5.324 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.218 0.782 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.401 0.599 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.762 4.071 -0.712 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.142 5.142 3 C -0.015 4.015 4 C -0.245 4.245 5 C 0.159 3.841 6 N -0.309 5.309 7 C -0.124 4.124 8 C -0.015 4.015 9 H 0.101 0.899 10 C 0.031 3.969 11 N -0.293 5.293 12 C -0.396 4.396 13 H 0.102 0.898 14 C -0.242 4.242 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.202 1.202 18 H -0.225 1.225 19 H -0.206 1.206 20 C 0.067 3.933 21 C 0.323 3.677 22 O -0.446 6.446 23 O -0.345 6.345 24 O -0.243 6.243 25 C -0.102 4.102 26 N -0.145 5.145 27 H 0.112 0.888 28 H 0.140 0.860 29 H 0.115 0.885 30 H 0.235 0.765 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.259 0.741 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -22.097 3.683 -0.466 22.407 hybrid contribution 2.955 -0.051 0.123 2.958 sum -19.142 3.632 -0.343 19.486 Atomic orbital electron populations 1.22406 0.70602 1.06701 1.05384 1.48809 1.08660 1.02992 1.53715 1.23212 0.88775 0.94831 0.94698 1.18076 0.89621 0.92040 1.24750 1.22753 0.84568 0.89177 0.87626 1.74982 1.21195 1.06742 1.27982 1.23999 0.86917 0.97769 1.03672 1.24923 0.91488 0.84770 1.00367 0.89859 1.20966 0.90271 0.88985 0.96671 1.43996 1.48097 1.05891 1.31328 1.19568 1.12741 1.08169 0.99110 0.89768 1.25538 0.98320 1.00384 0.99930 1.70016 1.37230 1.22970 1.27325 0.85278 0.77574 0.77100 0.80059 1.20188 1.22460 1.20590 1.20163 0.93555 0.92855 0.86677 1.25484 0.82195 0.77274 0.82783 1.90474 1.39152 1.38337 1.76663 1.84564 1.63788 1.51103 1.35049 1.87064 1.15443 1.40251 1.81591 1.24236 0.95552 0.94093 0.96343 1.77208 1.01889 1.09196 1.26177 0.88793 0.85969 0.88492 0.76546 0.86925 0.89085 0.90391 0.93702 0.94038 0.89100 0.90265 0.74088 0.78864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.45 127.77 1.46 2.10 16 2 N -0.36 -6.62 3.99 -367.80 -1.47 -8.09 16 3 C 0.14 2.68 11.39 84.20 0.96 3.64 16 4 C -0.23 -6.20 6.13 -20.15 -0.12 -6.33 16 5 C 0.38 11.97 7.73 87.51 0.68 12.64 16 6 N -0.57 -17.17 11.65 -450.98 -5.26 -22.42 16 7 C 0.01 0.18 7.68 86.79 0.67 0.85 16 8 C 0.04 1.52 4.02 31.21 0.13 1.65 16 9 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 10 C 0.16 6.32 5.39 86.38 0.47 6.78 16 11 N -0.57 -27.85 1.98 -706.37 -1.40 -29.25 16 12 C -0.27 -14.08 9.66 84.03 0.81 -13.27 16 13 H 0.08 4.25 7.92 -2.91 -0.02 4.23 16 14 C -0.05 -2.52 4.86 84.86 0.41 -2.11 16 15 N -0.93 -53.35 9.30 21.65 0.20 -53.15 16 16 Si 0.97 44.32 29.61 68.60 2.03 46.35 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 C 0.20 9.43 5.33 85.63 0.46 9.89 16 21 C 0.48 23.67 6.54 71.23 0.47 24.14 16 22 O -0.56 -31.08 16.89 21.94 0.37 -30.71 16 23 O -0.53 -21.96 13.42 -51.41 -0.69 -22.65 16 24 O -0.34 -12.29 9.61 -82.09 -0.79 -13.08 16 25 C 0.09 2.31 11.97 85.60 1.02 3.33 16 26 N -0.32 -8.20 12.51 -56.34 -0.70 -8.91 16 27 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.22 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.09 2.50 7.88 -2.39 -0.02 2.48 16 33 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 34 H 0.04 1.81 8.03 -2.39 -0.02 1.79 16 35 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.09 4.76 6.35 -2.39 -0.02 4.74 16 37 H 0.08 3.42 7.08 -2.38 -0.02 3.40 16 38 H 0.40 12.93 9.10 -74.06 -0.67 12.25 16 39 H 0.19 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -75.17 341.95 0.12 -75.05 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.42 Total: 23.54 kcal Atomic # 6 Polarization: 35.91 SS G_CDS: 7.40 Total: 43.31 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -8.63 Total: -121.82 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -1.11 Total: -66.44 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -75.17 0.12 -75.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608107034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.397 kcal (2) G-P(sol) polarization free energy of solvation -75.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds