Wall clock time and date at job start Tue Mar 31 2020 03:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99622 * 2 1 4 4 H 1.48497 * 109.47108 * 240.00063 * 3 2 1 5 5 H 1.48505 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47359 * 119.99773 * 3 2 1 7 7 C 1.37875 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46708 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99511 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99970 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 13 11 16 16 N 1.31797 * 119.08299 * 89.99892 * 15 14 13 17 17 C 1.32788 * 120.64876 * 180.02562 * 16 15 14 18 18 O 1.35514 * 120.54186 * 179.97438 * 17 16 15 19 19 C 1.39547 * 118.91307 * 359.92662 * 17 16 15 20 20 C 1.37637 * 118.52678 * 359.96541 * 19 17 16 21 21 N 1.31713 * 119.08058 * 269.72585 * 15 14 13 22 22 C 1.50573 * 121.35160 * 180.27476 * 20 19 17 23 23 C 1.53028 * 109.67069 * 343.04860 * 22 20 19 24 24 O 1.43203 * 108.60431 * 49.09394 * 23 22 20 25 25 C 1.42825 * 113.19920 * 289.54759 * 24 23 22 26 26 H 0.96994 * 120.00630 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.46995 * 60.00309 * 9 7 2 28 28 H 1.08994 * 109.46942 * 300.00079 * 9 7 2 29 29 H 0.97003 * 120.00113 * 0.02562 * 10 9 7 30 30 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 32 32 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 33 33 H 0.96695 * 114.00205 * 89.99638 * 18 17 16 34 34 H 1.08997 * 109.43720 * 222.98191 * 22 20 19 35 35 H 1.09002 * 109.39886 * 103.08280 * 22 20 19 36 36 H 1.09003 * 109.61986 * 289.35865 * 23 22 20 37 37 H 1.09001 * 109.76590 * 168.91939 * 23 22 20 38 38 H 1.08997 * 109.35962 * 291.23058 * 25 24 23 39 39 H 1.08997 * 109.35735 * 171.63748 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5587 -5.1055 0.0029 13 7 2.6300 -5.9076 0.0022 14 6 2.1417 -7.2889 0.0020 15 6 3.3139 -8.2360 0.0018 16 7 3.8123 -8.6388 1.1535 17 6 4.8451 -9.4727 1.1896 18 8 5.3562 -9.8850 2.3750 19 6 5.3948 -9.9182 -0.0132 20 6 4.8420 -9.4743 -1.1929 21 7 3.8082 -8.6425 -1.1494 22 6 5.3808 -9.9191 -2.5267 23 6 6.7790 -10.5139 -2.3451 24 8 6.7357 -11.4641 -1.2746 25 6 6.5673 -10.8592 0.0082 26 1 -0.4851 0.8399 -0.0004 27 1 0.6242 -2.5575 -0.8880 28 1 0.6249 -2.5563 0.8919 29 1 3.1570 -3.4353 0.0010 30 1 3.5836 -5.7304 0.0017 31 1 1.5359 -7.4602 0.8918 32 1 1.5364 -7.4602 -0.8881 33 1 4.9495 -10.6919 2.7192 34 1 5.4352 -9.0634 -3.1996 35 1 4.7183 -10.6732 -2.9516 36 1 7.4855 -9.7204 -2.1016 37 1 7.0901 -11.0115 -3.2637 38 1 7.4698 -10.3061 0.2682 39 1 6.3941 -11.6353 0.7537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681910764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:08 Heat of formation + Delta-G solvation = -97.478225 kcal Electronic energy + Delta-G solvation = -24337.510234 eV Core-core repulsion = 20472.478854 eV Total energy + Delta-G solvation = -3865.031380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.82567 -40.92478 -39.62594 -38.95379 -36.47250 -35.88838 -34.92414 -34.33907 -33.17313 -32.28674 -30.05292 -28.51626 -26.22442 -25.68890 -24.55534 -24.03481 -21.97986 -21.92828 -20.13391 -19.85826 -19.45042 -18.16742 -17.85246 -17.60983 -17.00261 -16.74463 -16.59326 -16.46737 -16.09183 -15.78070 -15.46639 -14.99369 -14.83515 -14.63676 -14.50553 -14.35811 -14.00988 -13.68835 -13.51330 -13.45076 -12.94039 -12.90533 -12.67522 -12.38574 -12.23044 -11.87683 -11.49666 -11.45096 -11.36905 -10.86848 -10.79275 -10.57609 -10.39489 -10.28757 -9.66261 -8.27423 -6.43937 -0.59949 -0.27209 1.43370 1.48163 1.55754 1.67652 2.03739 2.18171 2.37077 2.46462 2.51816 2.82218 3.00313 3.07255 3.35216 3.48476 3.61314 3.84749 3.88705 4.08942 4.20690 4.35278 4.41958 4.50090 4.62776 4.66717 4.82366 4.91532 5.06725 5.09621 5.28188 5.28385 5.47518 5.62033 5.66668 5.84668 5.97893 6.13237 6.38633 6.66703 6.78422 7.18797 7.26024 7.63962 8.84722 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.002428 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.495307 B =11527.685092 C =11756.692791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.285 3.715 10 N -0.721 5.721 11 C 0.700 3.300 12 O -0.640 6.640 13 N -0.727 5.727 14 C 0.215 3.785 15 C 0.327 3.673 16 N -0.545 5.545 17 C 0.369 3.631 18 O -0.471 6.471 19 C -0.232 4.232 20 C 0.184 3.816 21 N -0.518 5.518 22 C -0.106 4.106 23 C 0.058 3.942 24 O -0.383 6.383 25 C 0.119 3.881 26 H 0.269 0.731 27 H -0.011 1.011 28 H -0.012 1.012 29 H 0.404 0.596 30 H 0.405 0.595 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.431 0.569 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.261 -26.278 -2.158 32.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.100 0.900 9 C 0.162 3.838 10 N -0.375 5.375 11 C 0.399 3.601 12 O -0.522 6.522 13 N -0.385 5.385 14 C 0.089 3.911 15 C 0.059 3.941 16 N -0.270 5.270 17 C 0.180 3.820 18 O -0.282 6.282 19 C -0.238 4.238 20 C 0.041 3.959 21 N -0.235 5.235 22 C -0.143 4.143 23 C -0.019 4.019 24 O -0.301 6.301 25 C 0.041 3.959 26 H 0.078 0.922 27 H 0.007 0.993 28 H 0.006 0.994 29 H 0.239 0.761 30 H 0.240 0.760 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.295 0.705 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.153 0.847 38 H 0.105 0.895 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.647 -25.531 -2.178 31.113 hybrid contribution 0.722 0.512 0.446 0.991 sum 18.369 -25.019 -1.732 31.087 Atomic orbital electron populations 1.70130 1.08213 1.28667 1.49803 1.26054 0.95800 1.03806 0.93850 0.85194 0.77898 0.76592 0.79427 1.18676 1.20964 1.18778 1.21562 0.94262 0.90518 1.53130 0.89983 1.18451 0.88028 0.83056 0.94233 1.45303 1.10975 1.03667 1.77511 1.16087 0.84821 0.81316 0.77862 1.90852 1.16204 1.84762 1.60383 1.44630 1.09005 1.03821 1.81008 1.19616 0.90399 0.76916 1.04123 1.22508 0.94682 0.94230 0.82727 1.67817 1.12994 1.14444 1.31788 1.19340 0.87002 0.89247 0.86373 1.84702 1.60331 1.49761 1.33433 1.22194 1.04066 1.04118 0.93423 1.21726 0.88894 0.88437 0.96891 1.68260 1.12388 1.13051 1.29767 1.21289 0.98793 1.03345 0.90898 1.22919 0.93806 0.93164 0.92018 1.88121 1.93410 1.33379 1.15211 1.21325 0.92491 0.95233 0.86841 0.92183 0.99284 0.99392 0.76130 0.76031 0.89549 0.89126 0.70462 0.86848 0.87154 0.91373 0.84689 0.89540 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.99 42.89 29.54 68.60 2.03 44.92 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.56 -30.97 9.28 25.60 0.24 -30.73 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.29 16.19 5.43 85.63 0.46 16.66 16 10 N -0.72 -32.51 5.55 -482.30 -2.68 -35.19 16 11 C 0.70 30.71 8.57 179.05 1.53 32.24 16 12 O -0.64 -33.87 16.34 -3.98 -0.07 -33.94 16 13 N -0.73 -23.94 5.55 -482.29 -2.68 -26.61 16 14 C 0.22 6.43 6.10 85.63 0.52 6.96 16 15 C 0.33 8.49 7.01 138.77 0.97 9.46 16 16 N -0.54 -13.56 10.36 -300.63 -3.12 -16.68 16 17 C 0.37 6.88 7.81 84.86 0.66 7.54 16 18 O -0.47 -6.06 12.90 -88.17 -1.14 -7.19 16 19 C -0.23 -3.65 5.82 -19.80 -0.12 -3.77 16 20 C 0.18 3.35 6.68 42.24 0.28 3.63 16 21 N -0.52 -12.33 10.25 -176.64 -1.81 -14.14 16 22 C -0.11 -1.18 6.27 29.82 0.19 -0.99 16 23 C 0.06 0.44 6.84 71.99 0.49 0.93 16 24 O -0.38 -4.34 10.81 -148.98 -1.61 -5.95 16 25 C 0.12 1.16 6.33 71.13 0.45 1.61 16 26 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 28 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H 0.40 15.24 8.34 -92.71 -0.77 14.47 16 30 H 0.40 11.32 8.48 -92.71 -0.79 10.54 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.43 0.93 9.06 -74.06 -0.67 0.26 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.44 8.07 -2.39 -0.02 0.42 16 37 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.13 0.70 7.98 -2.39 -0.02 0.68 16 Total: -1.00 -80.84 340.47 -5.73 -86.57 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -1.10 Total: 20.48 kcal Atomic # 6 Polarization: 38.09 SS G_CDS: 6.15 Total: 44.24 kcal Atomic # 7 Polarization: -139.12 SS G_CDS: -10.00 Total: -149.12 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -2.81 Total: -47.08 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -80.84 -5.73 -86.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681910764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.913 kcal (2) G-P(sol) polarization free energy of solvation -80.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds