Wall clock time and date at job start Tue Mar 31 2020 03:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 C 1.53007 * 114.20496 * 272.48077 * 11 10 9 13 13 N 1.46502 * 109.46729 * 268.59777 * 12 11 10 14 14 C 1.34782 * 119.99467 * 179.97438 * 13 12 11 15 15 O 1.21278 * 120.00097 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99482 * 179.97438 * 14 13 12 17 17 N 1.46504 * 109.46722 * 180.02562 * 16 14 13 18 18 C 1.36168 * 119.85164 * 269.72464 * 17 16 14 19 19 C 1.35537 * 119.25548 * 179.77645 * 18 17 16 20 20 C 1.40734 * 119.00049 * 0.49251 * 19 18 17 21 21 O 1.35163 * 120.16577 * 179.72772 * 20 19 18 22 22 N 1.32435 * 119.67048 * 359.75371 * 20 19 18 23 23 C 1.33268 * 120.72371 * 359.97438 * 22 20 19 24 24 O 1.21982 * 119.47118 * 180.02562 * 23 22 20 25 25 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 26 26 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 27 27 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 28 28 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 29 29 H 1.08994 * 114.39005 * 139.66791 * 11 10 9 30 30 H 1.09003 * 109.46769 * 28.59074 * 12 11 10 31 31 H 1.08994 * 109.47332 * 148.59586 * 12 11 10 32 32 H 0.96991 * 120.00330 * 359.97438 * 13 12 11 33 33 H 1.08995 * 109.47096 * 299.99656 * 16 14 13 34 34 H 1.09001 * 109.47150 * 60.00337 * 16 14 13 35 35 H 1.07995 * 120.36923 * 0.02562 * 18 17 16 36 36 H 1.08007 * 120.50110 * 180.24655 * 19 18 17 37 37 H 0.96702 * 113.99973 * 180.02562 * 21 20 19 38 38 H 1.09005 * 113.46156 * 321.64040 * 25 9 7 39 39 H 1.08994 * 113.46837 * 92.01680 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 6 0.3898 -3.9958 -2.2186 13 7 -0.9049 -4.3938 -2.7768 14 6 -1.0946 -4.3856 -4.1112 15 8 -0.1937 -4.0484 -4.8497 16 6 -2.4263 -4.7955 -4.6854 17 7 -2.3775 -4.7024 -6.1466 18 6 -2.7304 -3.5412 -6.7640 19 6 -2.6763 -3.4669 -8.1162 20 6 -2.2660 -4.5983 -8.8458 21 8 -2.2088 -4.5521 -10.1954 22 7 -1.9366 -5.7086 -8.2034 23 6 -1.9889 -5.7665 -6.8731 24 8 -1.6800 -6.8007 -6.3048 25 6 1.6797 -3.8155 0.0005 26 1 -0.4849 0.8401 -0.0004 27 1 -0.4897 -2.9528 1.0077 28 1 -0.7251 -2.1596 -0.6083 29 1 -0.1731 -4.9861 -0.3346 30 1 0.6110 -2.9690 -2.5101 31 1 1.1682 -4.6572 -2.5990 32 1 -1.6256 -4.6630 -2.1861 33 1 -2.6469 -5.8225 -4.3943 34 1 -3.2051 -4.1347 -4.3047 35 1 -3.0459 -2.6877 -6.1824 36 1 -2.9479 -2.5545 -8.6265 37 1 -1.9163 -5.3777 -10.6052 38 1 2.5452 -4.0479 -0.6200 39 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753405531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:56 Heat of formation + Delta-G solvation = 4.199710 kcal Electronic energy + Delta-G solvation = -24811.294324 eV Core-core repulsion = 20950.672030 eV Total energy + Delta-G solvation = -3860.622294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03651 -39.71677 -38.85005 -38.17922 -36.86016 -34.77938 -34.38091 -32.24757 -31.56170 -29.45599 -27.99490 -25.83781 -24.98835 -24.64898 -23.53547 -22.42744 -20.69734 -20.00100 -19.03488 -18.37796 -17.61600 -17.42179 -16.78809 -16.01620 -15.97570 -15.70462 -15.33149 -14.96206 -14.85317 -14.57111 -14.23162 -14.07089 -13.80924 -13.54810 -13.42082 -12.93347 -12.61966 -12.26009 -12.14315 -11.60212 -11.15705 -11.03939 -10.99443 -10.78057 -10.61230 -10.55300 -10.06481 -10.02620 -9.88915 -9.82521 -9.31083 -8.86813 -8.83173 -8.80460 -6.93136 -5.81543 -3.13437 0.41295 1.47162 2.04678 2.57523 2.91023 3.17110 3.37706 3.41664 3.42481 3.64837 3.98679 4.23225 4.42808 4.46346 4.61405 4.76012 4.88940 5.08875 5.16808 5.20697 5.25803 5.30845 5.53955 5.80063 5.95445 6.07978 6.10691 6.31722 6.46009 6.51333 6.56319 6.71037 6.76177 7.11151 7.22409 7.48847 7.53017 7.58540 7.93205 7.96242 8.21707 8.99753 9.66288 10.59066 11.35992 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002988 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.812414 B = 9369.464953 C =10283.477806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.218 4.218 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.160 3.840 11 C -0.162 4.162 12 C 0.151 3.849 13 N -0.714 5.714 14 C 0.497 3.503 15 O -0.531 6.531 16 C 0.075 3.925 17 N -0.510 5.510 18 C 0.215 3.785 19 C -0.288 4.288 20 C 0.459 3.541 21 O -0.448 6.448 22 N -0.615 5.615 23 C 0.662 3.338 24 O -0.532 6.532 25 C 0.127 3.873 26 H 0.253 0.747 27 H 0.025 0.975 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.401 0.599 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.185 0.815 36 H 0.166 0.834 37 H 0.416 0.584 38 H 0.042 0.958 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 -8.244 -13.188 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.336 5.336 10 C 0.034 3.966 11 C -0.182 4.182 12 C 0.029 3.971 13 N -0.365 5.365 14 C 0.281 3.719 15 O -0.407 6.407 16 C -0.052 4.052 17 N -0.225 5.225 18 C 0.080 3.920 19 C -0.314 4.314 20 C 0.258 3.742 21 O -0.243 6.243 22 N -0.372 5.372 23 C 0.364 3.636 24 O -0.406 6.406 25 C 0.000 4.000 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.235 0.765 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.202 0.798 36 H 0.183 0.817 37 H 0.273 0.727 38 H 0.060 0.940 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.480 -8.545 -13.579 19.163 hybrid contribution 0.119 1.031 0.698 1.251 sum -10.361 -7.514 -12.881 18.158 Atomic orbital electron populations 1.69805 1.04997 1.25389 1.56663 1.24767 0.95702 0.97479 1.02422 0.86195 0.78517 0.83049 0.78000 1.21006 1.21537 1.21181 1.18904 0.90164 0.81514 1.43907 0.90184 1.45638 1.02643 0.99290 1.86003 1.22139 0.89109 0.89115 0.96258 1.23267 1.01124 0.99990 0.93805 1.21071 0.82773 1.01522 0.91743 1.45917 1.16762 1.67812 1.05994 1.20490 0.89579 0.78691 0.83167 1.90770 1.43647 1.47350 1.58954 1.21867 0.97865 1.07286 0.78175 1.46007 1.55056 1.12647 1.08838 1.22392 0.87078 0.88974 0.93598 1.20594 1.17562 1.01115 0.92151 1.20428 0.80572 0.88932 0.84316 1.84988 1.81581 1.42941 1.14791 1.69634 1.33142 1.26374 1.08089 1.17252 0.79178 0.83310 0.83881 1.91005 1.51530 1.28668 1.69436 1.22350 0.94292 0.86840 0.96555 0.93689 0.95707 0.90885 0.90892 0.89688 0.92099 0.76540 0.84941 0.85540 0.79839 0.81689 0.72679 0.93983 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 11.51 55.49 0.64 -25.89 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.03 10.75 -15.06 -0.16 -6.19 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.61 -15.16 3.62 -184.77 -0.67 -15.83 16 10 C 0.16 3.48 6.89 -8.51 -0.06 3.42 16 11 C -0.16 -2.75 4.18 -90.11 -0.38 -3.13 16 12 C 0.15 2.60 5.50 -4.04 -0.02 2.58 16 13 N -0.71 -9.58 5.56 -60.29 -0.33 -9.91 16 14 C 0.50 7.11 7.90 -10.98 -0.09 7.02 16 15 O -0.53 -10.22 16.43 5.56 0.09 -10.13 16 16 C 0.07 0.72 5.83 -5.19 -0.03 0.69 16 17 N -0.51 -5.84 2.08 -123.16 -0.26 -6.09 16 18 C 0.22 1.73 10.40 -16.59 -0.17 1.55 16 19 C -0.29 -2.29 10.03 -39.60 -0.40 -2.69 16 20 C 0.46 4.65 7.91 -16.35 -0.13 4.52 16 21 O -0.45 -3.29 13.55 -17.19 -0.23 -3.52 16 22 N -0.62 -8.54 10.40 -16.72 -0.17 -8.72 16 23 C 0.66 10.22 8.34 -88.44 -0.74 9.48 16 24 O -0.53 -10.07 16.72 4.93 0.08 -9.99 16 25 C 0.13 2.49 8.26 -8.52 -0.07 2.42 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.76 7.10 -51.93 -0.37 1.39 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.82 7.91 -51.93 -0.41 1.41 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 33 H 0.13 1.19 7.38 -51.93 -0.38 0.81 16 34 H 0.13 0.61 8.03 -51.93 -0.42 0.19 16 35 H 0.18 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.42 1.62 8.98 45.56 0.41 2.03 16 38 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -40.19 343.02 -7.07 -47.26 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.02 Total: 1.37 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: -2.34 Total: 19.38 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -0.80 Total: -66.45 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -40.19 -7.07 -47.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753405531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.458 kcal (2) G-P(sol) polarization free energy of solvation -40.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds