Wall clock time and date at job start Tue Mar 31 2020 03:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 C 1.53007 * 114.20496 * 272.48077 * 11 10 9 13 13 N 1.46502 * 109.46729 * 268.59777 * 12 11 10 14 14 C 1.34782 * 119.99467 * 179.97438 * 13 12 11 15 15 O 1.21278 * 120.00097 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99482 * 179.97438 * 14 13 12 17 17 N 1.46504 * 109.46722 * 180.02562 * 16 14 13 18 18 C 1.36168 * 119.85164 * 269.72464 * 17 16 14 19 19 C 1.35537 * 119.25548 * 179.77645 * 18 17 16 20 20 C 1.40734 * 119.00049 * 0.49251 * 19 18 17 21 21 O 1.35163 * 120.16577 * 179.72772 * 20 19 18 22 22 N 1.32435 * 119.67048 * 359.75371 * 20 19 18 23 23 C 1.33268 * 120.72371 * 359.97438 * 22 20 19 24 24 O 1.21982 * 119.47118 * 180.02562 * 23 22 20 25 25 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 26 26 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 27 27 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 28 28 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 29 29 H 1.08994 * 114.39005 * 139.66791 * 11 10 9 30 30 H 1.09003 * 109.46769 * 28.59074 * 12 11 10 31 31 H 1.08994 * 109.47332 * 148.59586 * 12 11 10 32 32 H 0.96991 * 120.00330 * 359.97438 * 13 12 11 33 33 H 1.08995 * 109.47096 * 299.99656 * 16 14 13 34 34 H 1.09001 * 109.47150 * 60.00337 * 16 14 13 35 35 H 1.07995 * 120.36923 * 0.02562 * 18 17 16 36 36 H 1.08007 * 120.50110 * 180.24655 * 19 18 17 37 37 H 0.96702 * 113.99973 * 180.02562 * 21 20 19 38 38 H 1.09005 * 113.46156 * 321.64040 * 25 9 7 39 39 H 1.08994 * 113.46837 * 92.01680 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 6 0.3898 -3.9958 -2.2186 13 7 -0.9049 -4.3938 -2.7768 14 6 -1.0946 -4.3856 -4.1112 15 8 -0.1937 -4.0484 -4.8497 16 6 -2.4263 -4.7955 -4.6854 17 7 -2.3775 -4.7024 -6.1466 18 6 -2.7304 -3.5412 -6.7640 19 6 -2.6763 -3.4669 -8.1162 20 6 -2.2660 -4.5983 -8.8458 21 8 -2.2088 -4.5521 -10.1954 22 7 -1.9366 -5.7086 -8.2034 23 6 -1.9889 -5.7665 -6.8731 24 8 -1.6800 -6.8007 -6.3048 25 6 1.6797 -3.8155 0.0005 26 1 -0.4849 0.8401 -0.0004 27 1 -0.4897 -2.9528 1.0077 28 1 -0.7251 -2.1596 -0.6083 29 1 -0.1731 -4.9861 -0.3346 30 1 0.6110 -2.9690 -2.5101 31 1 1.1682 -4.6572 -2.5990 32 1 -1.6256 -4.6630 -2.1861 33 1 -2.6469 -5.8225 -4.3943 34 1 -3.2051 -4.1347 -4.3047 35 1 -3.0459 -2.6877 -6.1824 36 1 -2.9479 -2.5545 -8.6265 37 1 -1.9163 -5.3777 -10.6052 38 1 2.5452 -4.0479 -0.6200 39 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753405531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:56 Heat of formation + Delta-G solvation = -32.210339 kcal Electronic energy + Delta-G solvation = -24812.873182 eV Core-core repulsion = 20950.672030 eV Total energy + Delta-G solvation = -3862.201152 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.90310 -40.89394 -39.94152 -39.47252 -37.82496 -35.79435 -35.55783 -34.21183 -32.37954 -30.81750 -29.38539 -27.30943 -26.32374 -25.78380 -24.59413 -24.04508 -21.85154 -20.77462 -20.53265 -19.13336 -18.82047 -18.46213 -18.42422 -17.10832 -17.00528 -16.88141 -16.82446 -16.40689 -15.80912 -15.65831 -15.53992 -15.16898 -14.85185 -14.70083 -14.44669 -14.30664 -14.19010 -13.40745 -13.25211 -13.06339 -12.94959 -12.80415 -12.56019 -12.29948 -12.03419 -11.83001 -11.63653 -11.45838 -11.09324 -10.97938 -10.96677 -10.83566 -10.12686 -9.68407 -8.89184 -7.90333 -5.21731 -0.32257 0.66803 1.23857 1.45002 1.47625 1.48752 1.53249 2.12013 2.26099 2.47689 2.71688 3.28165 3.31462 3.49452 3.57383 3.64950 3.76745 3.84571 3.96781 4.12495 4.20941 4.44220 4.51980 4.57132 4.63782 4.78230 4.89196 4.97234 5.08415 5.18137 5.25423 5.32905 5.35979 5.55127 5.63440 5.97190 6.15838 6.47038 6.66235 6.93784 7.02592 7.16546 7.61265 8.62348 9.26725 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.002988 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.812414 B = 9369.464953 C =10283.477806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.644 5.644 10 C 0.159 3.841 11 C -0.124 4.124 12 C 0.163 3.837 13 N -0.701 5.701 14 C 0.493 3.507 15 O -0.587 6.587 16 C 0.082 3.918 17 N -0.513 5.513 18 C 0.214 3.786 19 C -0.286 4.286 20 C 0.457 3.543 21 O -0.440 6.440 22 N -0.656 5.656 23 C 0.650 3.350 24 O -0.589 6.589 25 C 0.121 3.879 26 H 0.248 0.752 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.122 0.878 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.421 0.579 33 H 0.140 0.860 34 H 0.186 0.814 35 H 0.231 0.769 36 H 0.200 0.800 37 H 0.430 0.570 38 H 0.044 0.956 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.937 -7.867 -13.270 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.371 5.371 10 C 0.033 3.967 11 C -0.143 4.143 12 C 0.039 3.961 13 N -0.354 5.354 14 C 0.279 3.721 15 O -0.467 6.467 16 C -0.043 4.043 17 N -0.228 5.228 18 C 0.080 3.920 19 C -0.311 4.311 20 C 0.258 3.742 21 O -0.236 6.236 22 N -0.415 5.415 23 C 0.352 3.648 24 O -0.468 6.468 25 C -0.005 4.005 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.259 0.741 33 H 0.158 0.842 34 H 0.203 0.797 35 H 0.248 0.752 36 H 0.217 0.783 37 H 0.289 0.711 38 H 0.062 0.938 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.956 -8.164 -13.678 19.917 hybrid contribution 0.583 0.926 0.627 1.261 sum -11.373 -7.238 -13.050 18.763 Atomic orbital electron populations 1.69962 1.06063 1.25552 1.57984 1.25524 0.96633 1.00426 1.03016 0.85234 0.77308 0.79257 0.78032 1.20741 1.21614 1.20517 1.19238 0.90558 0.83214 1.42976 0.90446 1.45994 1.04412 1.00509 1.86211 1.22125 0.87480 0.90882 0.96192 1.22991 0.99063 0.99388 0.92876 1.20657 0.84701 0.98678 0.92047 1.45714 1.16025 1.67202 1.06420 1.21357 0.90757 0.77205 0.82766 1.90746 1.45925 1.49862 1.60201 1.22094 0.96044 1.09071 0.77130 1.45935 1.54560 1.12852 1.09446 1.23246 0.85792 0.88757 0.94191 1.21078 1.16257 1.01390 0.92351 1.20801 0.79545 0.88735 0.85121 1.84988 1.81103 1.43948 1.13556 1.69486 1.35310 1.28689 1.08055 1.17454 0.79159 0.83669 0.84490 1.90937 1.54500 1.30879 1.70499 1.22588 0.95859 0.84136 0.97877 0.94259 0.95798 0.93694 0.86013 0.94499 0.92540 0.74085 0.84189 0.79711 0.75243 0.78337 0.71069 0.93766 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.30 11.51 21.65 0.25 -55.05 16 2 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.97 45.52 29.55 68.60 2.03 47.54 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.23 -12.99 10.75 84.03 0.90 -12.09 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.64 -32.14 3.62 -738.50 -2.67 -34.81 16 10 C 0.16 6.83 6.89 83.18 0.57 7.40 16 11 C -0.12 -3.96 4.18 -10.46 -0.04 -4.00 16 12 C 0.16 5.53 5.50 86.38 0.47 6.00 16 13 N -0.70 -17.63 5.56 -463.04 -2.57 -20.20 16 14 C 0.49 13.50 7.90 87.66 0.69 14.19 16 15 O -0.59 -22.79 16.43 -3.02 -0.05 -22.84 16 16 C 0.08 1.36 5.83 85.63 0.50 1.86 16 17 N -0.51 -10.90 2.08 -661.78 -1.38 -12.28 16 18 C 0.21 2.77 10.40 83.40 0.87 3.64 16 19 C -0.29 -3.76 10.03 22.25 0.22 -3.53 16 20 C 0.46 8.72 7.91 85.21 0.67 9.39 16 21 O -0.44 -5.80 13.55 -84.41 -1.14 -6.94 16 22 N -0.66 -18.39 10.40 -438.81 -4.56 -22.96 16 23 C 0.65 20.23 8.34 179.59 1.50 21.72 16 24 O -0.59 -23.08 16.72 -5.26 -0.09 -23.17 16 25 C 0.12 4.60 8.26 83.17 0.69 5.29 16 26 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.04 2.18 7.10 -2.39 -0.02 2.16 16 29 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.04 1.62 7.91 -2.39 -0.02 1.60 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.42 7.01 8.47 -92.72 -0.79 6.23 16 33 H 0.14 2.22 7.38 -2.39 -0.02 2.21 16 34 H 0.19 0.85 8.03 -2.39 -0.02 0.83 16 35 H 0.23 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.43 2.99 8.98 -74.06 -0.66 2.32 16 38 H 0.04 1.65 8.12 -2.38 -0.02 1.63 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -93.69 343.02 -3.02 -96.70 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -0.34 Total: 7.19 kcal Atomic # 6 Polarization: 39.31 SS G_CDS: 7.51 Total: 46.82 kcal Atomic # 7 Polarization: -134.37 SS G_CDS: -10.94 Total: -145.30 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.28 Total: -52.95 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -93.69 -3.02 -96.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753405531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.493 kcal (2) G-P(sol) polarization free energy of solvation -93.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds