Wall clock time and date at job start Tue Mar 31 2020 03:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00257 * 2 1 4 4 H 1.48494 * 109.47030 * 239.99776 * 3 2 1 5 5 H 1.48502 * 109.46883 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47041 * 119.99732 * 3 2 1 7 7 C 1.38816 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00132 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99803 * 359.97438 * 7 2 1 10 10 C 1.47588 * 134.49405 * 0.02562 * 9 7 2 11 11 C 1.53946 * 86.11515 * 155.36097 * 10 9 7 12 12 C 1.47579 * 134.49188 * 180.02562 * 9 7 2 13 13 H 1.09001 * 113.87507 * 90.32965 * 12 9 7 14 14 C 1.53001 * 113.77038 * 318.93771 * 12 9 7 15 15 N 1.46499 * 109.46783 * 78.50318 * 14 12 9 16 16 C 1.34776 * 120.00138 * 179.97438 * 15 14 12 17 17 O 1.21280 * 119.99898 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00365 * 180.02562 * 16 15 14 19 19 N 1.46503 * 109.47166 * 180.02562 * 18 16 15 20 20 C 1.36157 * 119.85066 * 90.00317 * 19 18 16 21 21 C 1.35546 * 119.25794 * 179.97438 * 20 19 18 22 22 C 1.40741 * 118.99624 * 0.27795 * 21 20 19 23 23 O 1.35161 * 120.16357 * 179.70052 * 22 21 20 24 24 N 1.32427 * 119.66952 * 359.40963 * 22 21 20 25 25 C 1.33270 * 120.72571 * 0.59995 * 24 22 21 26 26 O 1.21979 * 119.46947 * 179.72674 * 25 24 22 27 27 H 0.97002 * 119.99787 * 0.02562 * 1 2 3 28 28 H 1.08997 * 113.76675 * 41.06310 * 10 9 7 29 29 H 1.09002 * 113.76808 * 269.66377 * 10 9 7 30 30 H 1.09003 * 113.73813 * 269.26354 * 11 10 9 31 31 H 1.08999 * 113.84172 * 137.97000 * 11 10 9 32 32 H 1.09002 * 109.46995 * 318.51388 * 14 12 9 33 33 H 1.08991 * 109.47483 * 198.50986 * 14 12 9 34 34 H 0.97006 * 120.00478 * 0.02562 * 15 14 12 35 35 H 1.09002 * 109.46554 * 60.00672 * 18 16 15 36 36 H 1.08998 * 109.47071 * 300.00859 * 18 16 15 37 37 H 1.07999 * 120.37156 * 359.97438 * 20 19 18 38 38 H 1.08002 * 120.49840 * 179.97438 * 21 20 19 39 39 H 0.96697 * 114.00114 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1033 -2.7574 -0.0005 11 6 0.3470 -4.0829 -0.6409 12 6 1.7201 -3.8101 -0.0005 13 1 1.8325 -4.2368 0.9962 14 6 2.9023 -4.1222 -0.9203 15 7 4.1496 -3.7189 -0.2662 16 6 5.3286 -3.8999 -0.8935 17 8 5.3570 -4.3962 -1.9997 18 6 6.6118 -3.4856 -0.2204 19 7 7.7438 -3.7842 -1.1011 20 6 8.1745 -2.8490 -1.9919 21 6 9.2233 -3.1378 -2.8006 22 6 9.8345 -4.4015 -2.7001 23 8 10.8781 -4.7167 -3.4992 24 7 9.3859 -5.2781 -1.8146 25 6 8.3538 -4.9814 -1.0254 26 8 7.9562 -5.8079 -0.2213 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7168 -2.1391 -0.6558 29 1 -0.5272 -2.8730 0.9970 30 1 0.3591 -4.0620 -1.7306 31 1 -0.1584 -4.9608 -0.2383 32 1 2.7892 -3.5743 -1.8559 33 1 2.9296 -5.1920 -1.1267 34 1 4.1270 -3.3223 0.6188 35 1 6.7245 -4.0335 0.7152 36 1 6.5848 -2.4157 -0.0139 37 1 7.6861 -1.8877 -2.0535 38 1 9.5812 -2.4110 -3.5148 39 1 11.2294 -5.6060 -3.3549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754489378.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:09 Heat of formation + Delta-G solvation = -0.687809 kcal Electronic energy + Delta-G solvation = -25095.605042 eV Core-core repulsion = 21234.770809 eV Total energy + Delta-G solvation = -3860.834233 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00221 -39.63201 -38.77825 -37.94969 -36.82783 -34.73643 -34.23316 -32.27890 -31.53582 -29.30948 -27.99453 -27.00757 -25.01476 -23.58239 -23.44743 -22.19028 -20.60289 -19.97743 -19.23060 -18.35934 -17.81255 -17.52346 -16.64479 -15.97074 -15.93010 -15.55489 -15.44487 -14.91395 -14.83370 -14.53460 -14.16363 -14.04627 -13.76300 -13.50794 -13.38071 -13.15445 -12.50508 -12.12824 -11.89059 -11.50194 -11.19290 -11.09719 -10.96636 -10.82226 -10.65630 -10.54209 -10.14246 -10.03650 -9.85882 -9.81469 -9.48099 -8.88537 -8.78836 -8.75641 -6.98120 -5.84880 -3.17871 0.44355 1.49599 2.08938 2.63758 2.92863 3.24985 3.29080 3.32078 3.36479 3.68804 4.01760 4.27453 4.33352 4.52529 4.69076 4.80716 4.96830 5.05795 5.11403 5.20757 5.31056 5.55360 5.61722 5.83255 5.83702 6.01442 6.14352 6.23075 6.34277 6.54520 6.59545 6.73870 6.77866 7.16141 7.33711 7.50822 7.58306 7.64747 7.89453 7.99168 8.28149 8.94573 9.62031 10.51318 11.31764 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.003456 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.710444 B = 8099.644343 C = 9187.448708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.051 0.949 14 C 0.124 3.876 15 N -0.705 5.705 16 C 0.498 3.502 17 O -0.540 6.540 18 C 0.073 3.927 19 N -0.508 5.508 20 C 0.216 3.784 21 C -0.289 4.289 22 C 0.459 3.541 23 O -0.449 6.449 24 N -0.616 5.616 25 C 0.662 3.338 26 O -0.532 6.532 27 H 0.254 0.746 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.405 0.595 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.665 -4.555 -3.014 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.068 0.932 14 C 0.000 4.000 15 N -0.356 5.356 16 C 0.282 3.718 17 O -0.417 6.417 18 C -0.053 4.053 19 N -0.224 5.224 20 C 0.080 3.920 21 C -0.316 4.316 22 C 0.257 3.743 23 O -0.243 6.243 24 N -0.373 5.373 25 C 0.364 3.636 26 O -0.406 6.406 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.240 0.760 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.201 0.799 38 H 0.183 0.817 39 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 15.605 -5.390 -3.291 16.835 hybrid contribution 0.284 1.415 0.512 1.531 sum 15.890 -3.976 -2.779 16.614 Atomic orbital electron populations 1.69805 1.05006 1.25470 1.56207 1.24781 0.95629 0.97440 1.02489 0.86272 0.78605 0.83538 0.77720 1.21201 1.21527 1.21230 1.18852 0.90007 0.81951 1.44195 0.90525 1.46074 1.02337 0.98502 1.86007 1.22201 0.87877 0.89592 0.96941 1.23772 0.96072 0.99048 1.00588 1.22512 0.92290 0.87691 0.95703 0.93155 1.21820 0.81905 0.98919 0.97363 1.45863 1.05827 1.62530 1.21354 1.20479 0.85286 0.79537 0.86508 1.90732 1.87089 1.44075 1.19799 1.21889 0.83700 1.04718 0.95042 1.46013 1.28541 1.15281 1.32548 1.22402 0.90773 0.94197 0.84591 1.20581 1.03115 0.98442 1.09448 1.20420 0.82503 0.88739 0.82618 1.84984 1.43222 1.40287 1.55851 1.69628 1.19295 1.33774 1.14572 1.17249 0.81516 0.80495 0.84385 1.91004 1.65324 1.45832 1.38446 0.93543 0.90801 0.95502 0.90510 0.92718 0.90792 0.92014 0.76029 0.84928 0.85507 0.79884 0.81731 0.72720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.98 11.38 55.49 0.63 -25.35 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 20.65 29.55 -169.99 -5.02 15.62 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.22 -5.61 10.51 -15.06 -0.16 -5.77 16 8 H 0.08 1.79 7.80 -52.49 -0.41 1.38 16 9 N -0.60 -13.96 3.57 -170.74 -0.61 -14.57 16 10 C 0.16 3.52 7.51 -2.97 -0.02 3.50 16 11 C -0.16 -2.75 7.86 -25.81 -0.20 -2.96 16 12 C 0.13 2.30 4.33 -66.86 -0.29 2.01 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.14 5.54 -4.04 -0.02 2.12 16 15 N -0.71 -10.80 5.53 -60.30 -0.33 -11.13 16 16 C 0.50 7.66 7.90 -10.98 -0.09 7.58 16 17 O -0.54 -10.43 16.43 5.56 0.09 -10.34 16 18 C 0.07 0.82 5.83 -5.19 -0.03 0.79 16 19 N -0.51 -6.28 2.08 -123.16 -0.26 -6.54 16 20 C 0.22 1.90 10.40 -16.59 -0.17 1.73 16 21 C -0.29 -2.44 10.03 -39.60 -0.40 -2.84 16 22 C 0.46 4.81 7.91 -16.35 -0.13 4.68 16 23 O -0.45 -3.39 13.55 -17.18 -0.23 -3.63 16 24 N -0.62 -8.80 10.40 -16.72 -0.17 -8.97 16 25 C 0.66 10.63 8.34 -88.44 -0.74 9.89 16 26 O -0.53 -10.42 16.72 4.94 0.08 -10.34 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.07 1.83 7.15 -51.93 -0.37 1.46 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.41 5.58 8.47 -40.82 -0.35 5.24 16 35 H 0.13 1.43 7.38 -51.93 -0.38 1.05 16 36 H 0.13 0.90 8.03 -51.93 -0.42 0.48 16 37 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.42 1.71 8.98 45.56 0.41 2.12 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -37.81 343.26 -7.03 -44.84 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.03 Total: 4.77 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: -2.34 Total: 20.47 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.74 Total: -66.57 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.81 -7.03 -44.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754489378.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.147 kcal (2) G-P(sol) polarization free energy of solvation -37.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds