Wall clock time and date at job start Tue Mar 31 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09011 * 109.46922 * 2 1 4 4 C 1.52999 * 109.47578 * 240.00082 * 2 1 3 5 5 C 1.52998 * 109.47394 * 174.99722 * 4 2 1 6 6 C 1.52999 * 109.47027 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47074 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47077 * 179.97438 * 7 6 5 9 9 C 1.36933 * 119.99900 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00139 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99986 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00234 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00015 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47517 * 89.99818 * 13 11 9 15 15 H 1.48506 * 109.46992 * 209.99733 * 13 11 9 16 16 H 1.48502 * 109.47027 * 329.99646 * 13 11 9 17 17 N 1.46497 * 109.47299 * 119.99624 * 2 1 3 18 18 C 1.34778 * 120.00074 * 275.00413 * 17 2 1 19 19 O 1.21510 * 119.99893 * 359.97438 * 18 17 2 20 20 C 1.48154 * 119.99866 * 179.97438 * 18 17 2 21 21 C 1.39894 * 121.12356 * 359.97438 * 20 18 17 22 22 N 1.31760 * 119.78828 * 179.97438 * 21 20 18 23 23 N 1.28282 * 122.42046 * 0.02562 * 22 21 20 24 24 C 1.32275 * 122.43366 * 0.02562 * 23 22 21 25 25 O 1.35699 * 120.07968 * 179.97438 * 24 23 22 26 26 C 1.39235 * 119.83745 * 0.25008 * 24 23 22 27 27 H 1.09005 * 109.47018 * 60.00246 * 1 2 3 28 28 H 1.09004 * 109.47237 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47338 * 300.00206 * 1 2 3 30 30 H 1.09003 * 109.46866 * 295.00227 * 4 2 1 31 31 H 1.09001 * 109.46845 * 54.99351 * 4 2 1 32 32 H 1.08997 * 109.47130 * 299.99991 * 5 4 2 33 33 H 1.08998 * 109.46972 * 60.00206 * 5 4 2 34 34 H 1.09004 * 109.47194 * 299.99651 * 6 5 4 35 35 H 1.08990 * 109.47275 * 60.00136 * 6 5 4 36 36 H 1.08997 * 109.46796 * 299.99893 * 7 6 5 37 37 H 1.08998 * 109.47260 * 60.00079 * 7 6 5 38 38 H 0.96993 * 119.99898 * 359.97438 * 8 7 6 39 39 H 0.97001 * 120.00576 * 179.97438 * 12 11 9 40 40 H 0.97003 * 120.00071 * 95.00334 * 17 2 1 41 41 H 1.08006 * 120.10594 * 359.97438 * 21 20 18 42 42 H 0.96700 * 114.00288 * 89.99904 * 25 24 23 43 43 H 1.08000 * 121.11569 * 179.72373 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 6 4.0749 -1.3349 -2.5625 7 6 5.5998 -1.2274 -2.6267 8 7 6.0883 -1.9191 -3.8222 9 6 7.4303 -1.9556 -4.0918 10 1 8.1288 -1.4748 -3.4228 11 6 7.8932 -2.6114 -5.2242 12 7 9.1832 -2.6469 -5.4831 13 14 6.6853 -3.4435 -6.3809 14 1 6.2505 -2.4774 -7.4214 15 1 7.3421 -4.6069 -7.0292 16 1 5.5030 -3.9078 -5.6115 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0181 2.3571 19 8 1.8583 1.1610 2.4115 20 6 2.6403 -0.7166 3.5670 21 6 2.9788 -2.0735 3.5310 22 7 3.4155 -2.6684 4.6226 23 7 3.5464 -2.0486 5.7381 24 6 3.2524 -0.7663 5.8760 25 8 3.4086 -0.1583 7.0791 26 6 2.7769 -0.0434 4.7852 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 3.8532 0.4371 -1.3573 33 1 3.9995 -1.0727 -0.4259 34 1 3.7867 -2.3853 -2.5184 35 1 3.6404 -0.8759 -3.4504 36 1 5.8884 -0.1773 -2.6706 37 1 6.0341 -1.6868 -1.7387 38 1 5.4611 -2.3512 -4.4228 39 1 9.5068 -3.1054 -6.2742 40 1 2.2491 -1.6317 1.1527 41 1 2.8826 -2.6317 2.6114 42 1 4.2836 0.2313 7.2123 43 1 2.5264 1.0032 4.8757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171396310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:09 Heat of formation + Delta-G solvation = -16.409382 kcal Electronic energy + Delta-G solvation = -24227.285235 eV Core-core repulsion = 20501.602358 eV Total energy + Delta-G solvation = -3725.682877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89557 -40.19636 -38.16363 -37.30023 -35.56670 -34.09767 -33.36032 -32.15189 -31.50115 -30.62972 -27.86877 -26.19788 -25.06468 -24.28714 -22.35636 -21.54204 -21.10077 -20.92169 -19.63761 -18.77625 -17.86154 -17.51108 -16.91327 -16.62426 -16.24446 -15.60002 -15.26981 -14.75521 -14.55656 -14.46773 -14.25708 -14.02768 -13.66354 -13.48350 -13.15429 -12.82632 -12.78178 -12.56922 -12.01897 -11.96099 -11.80055 -11.56474 -11.29268 -10.97379 -10.92764 -10.87699 -10.85626 -10.49560 -10.41486 -10.37621 -10.13800 -10.00681 -9.62224 -9.56766 -8.90805 -7.24349 -5.77964 -3.13585 -0.31279 0.14081 2.15051 2.38703 2.74104 3.01545 3.35526 3.38086 3.43579 3.58696 3.73075 3.94708 4.19563 4.30538 4.40793 4.57724 4.66685 4.76758 4.90657 5.06000 5.14918 5.17503 5.21321 5.29920 5.38100 5.43702 5.50408 5.56328 5.66104 5.75859 5.89650 5.94260 6.00258 6.10418 6.13446 6.27863 6.69975 6.72547 6.76311 6.87796 7.55059 7.98588 8.00642 8.41238 9.20503 9.92869 10.12864 11.40560 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.002462 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.426813 B =11368.974045 C =12571.620276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.116 4.116 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.710 5.710 18 C 0.564 3.436 19 O -0.522 6.522 20 C -0.114 4.114 21 C 0.061 3.939 22 N -0.210 5.210 23 N -0.242 5.242 24 C 0.258 3.742 25 O -0.470 6.470 26 C -0.075 4.075 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.402 0.598 41 H 0.181 0.819 42 H 0.410 0.590 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.501 5.456 19.993 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.193 4.193 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.362 5.362 18 C 0.348 3.652 19 O -0.398 6.398 20 C -0.129 4.129 21 C -0.105 4.105 22 N -0.053 5.053 23 N -0.094 5.094 24 C 0.072 3.928 25 O -0.276 6.276 26 C -0.106 4.106 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.238 0.762 41 H 0.198 0.802 42 H 0.270 0.730 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.491 4.878 20.900 28.991 hybrid contribution -0.613 0.357 -1.619 1.768 sum -20.104 5.235 19.281 28.343 Atomic orbital electron populations 1.22190 0.94898 1.02381 1.02816 1.21170 0.94052 0.97868 0.83208 0.88800 1.21970 0.96925 1.01086 0.96658 1.21532 0.93864 1.01368 0.98625 1.21779 0.97353 1.00315 0.97334 1.20626 0.90709 0.95713 0.90048 1.42731 1.05292 1.66048 1.26291 1.19076 0.82305 1.29317 1.06791 0.89297 1.24697 0.95647 1.00696 0.98302 1.69706 1.11726 1.48226 1.28636 0.86511 0.80858 0.79459 0.81473 1.21080 1.21700 1.20360 1.46022 1.66416 1.14268 1.09462 1.17836 0.78210 0.86469 0.82685 1.90817 1.49375 1.14980 1.84579 1.21278 1.00962 0.95090 0.95533 1.24634 0.93780 0.92057 1.00022 1.73119 1.09066 1.28765 0.94347 1.72845 1.11677 1.07843 1.17057 1.20801 0.95900 0.90035 0.86045 1.84809 1.39090 1.73102 1.30641 1.22799 0.94411 1.03055 0.90341 0.91129 0.92254 0.92142 0.91114 0.89830 0.91652 0.92004 0.92088 0.92011 0.95717 0.95819 0.80722 0.93048 0.76192 0.80187 0.73044 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.48 37.15 0.35 -0.73 16 2 C 0.14 1.03 2.57 -67.94 -0.17 0.85 16 3 H 0.09 0.84 7.58 -51.92 -0.39 0.45 16 4 C -0.13 -0.94 4.75 -26.73 -0.13 -1.06 16 5 C -0.12 -1.16 5.10 -26.73 -0.14 -1.29 16 6 C -0.13 -1.76 5.33 -26.73 -0.14 -1.90 16 7 C 0.16 2.93 6.26 -4.04 -0.03 2.91 16 8 N -0.76 -18.10 5.41 -59.91 -0.32 -18.43 16 9 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 10 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 11 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 12 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 13 Si 0.89 22.07 27.74 -169.99 -4.71 17.35 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 17 N -0.71 -4.79 4.49 -54.65 -0.25 -5.03 16 18 C 0.56 4.92 7.77 -12.19 -0.09 4.82 16 19 O -0.52 -6.21 16.15 5.36 0.09 -6.13 16 20 C -0.11 -0.89 5.92 -104.60 -0.62 -1.51 16 21 C 0.06 0.44 10.84 -16.96 -0.18 0.26 16 22 N -0.21 -2.11 11.48 30.79 0.35 -1.76 16 23 N -0.24 -2.54 11.50 30.49 0.35 -2.19 16 24 C 0.26 2.14 7.85 -16.99 -0.13 2.01 16 25 O -0.47 -3.01 13.57 -18.80 -0.26 -3.27 16 26 C -0.08 -0.57 9.72 -38.61 -0.38 -0.94 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.36 8.31 5.53 -40.82 -0.23 8.08 16 39 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 40 H 0.40 1.80 6.75 -40.82 -0.28 1.53 16 41 H 0.18 0.70 6.53 -52.48 -0.34 0.36 16 42 H 0.41 0.51 9.06 45.56 0.41 0.92 16 43 H 0.17 1.09 7.79 -52.49 -0.41 0.68 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -37.01 365.39 -5.84 -42.85 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.45 Total: 3.70 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.91 Total: -3.80 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.91 Total: -56.21 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.17 Total: -9.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.01 -5.84 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171396310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.437 kcal (2) G-P(sol) polarization free energy of solvation -37.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds