Wall clock time and date at job start Tue Mar 31 2020 05:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00498 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99920 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47441 * 89.99762 * 14 12 10 16 16 H 1.48495 * 109.46914 * 210.00201 * 14 12 10 17 17 H 1.48508 * 109.46806 * 329.99819 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21617 * 120.00040 * 0.02562 * 20 19 18 22 22 C 1.47260 * 119.99868 * 179.97438 * 20 19 18 23 23 C 1.46689 * 126.94156 * 179.97438 * 22 20 19 24 24 C 1.34495 * 106.33144 * 179.97438 * 23 22 20 25 25 N 1.36441 * 108.85587 * 0.02562 * 24 23 22 26 26 H 0.97000 * 124.84858 * 180.02562 * 25 24 23 27 27 C 1.34660 * 110.30047 * 359.74915 * 25 24 23 28 28 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 30 30 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 31 31 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 32 32 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 33 33 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 34 34 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 35 35 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 36 36 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 37 37 H 0.97002 * 120.00283 * 180.02562 * 13 12 10 38 38 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 39 39 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 40 40 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 41 41 H 1.07998 * 126.83424 * 359.96475 * 23 22 20 42 42 H 1.08001 * 125.57046 * 180.02562 * 24 23 22 43 43 H 1.07998 * 125.80526 * 180.29585 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 1.6340 0.7624 9.5298 14 14 2.9666 -1.5209 8.7044 15 1 4.4199 -1.2160 8.6926 16 1 2.6023 -2.1454 10.0015 17 1 2.6484 -2.4580 7.5971 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6267 -1.4471 -3.7795 22 6 1.6057 0.3466 -4.8653 23 6 1.8966 0.0016 -6.2610 24 6 1.3509 0.9743 -7.0126 25 7 0.7521 1.8835 -6.1903 26 1 0.2866 2.6799 -6.4902 27 6 0.8946 1.5143 -4.9031 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 3.1263 -0.7994 1.2057 32 1 1.6055 -1.7197 1.2953 33 1 0.6528 0.1794 2.4753 34 1 1.6921 -1.6245 3.7302 35 1 3.2127 -0.7036 3.6401 36 1 2.5415 -1.0610 6.2252 37 1 1.8701 0.4604 10.4209 38 1 3.1264 -0.7994 -1.2055 39 1 1.6054 -1.7198 -1.2951 40 1 1.1483 0.8590 -2.3517 41 1 2.4408 -0.8616 -6.6147 42 1 1.3816 1.0269 -8.0909 43 1 0.5134 2.0499 -4.0463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753615082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:05 Heat of formation + Delta-G solvation = -28.053587 kcal Electronic energy + Delta-G solvation = -23781.092952 eV Core-core repulsion = 20054.905145 eV Total energy + Delta-G solvation = -3726.187807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48463 -39.42853 -38.52691 -37.21192 -34.86861 -33.90297 -32.47139 -31.64067 -31.24571 -29.64111 -27.54392 -26.86280 -24.90446 -23.42812 -22.46193 -21.00061 -20.62969 -19.74674 -19.36434 -19.03083 -18.30194 -16.61885 -16.47892 -15.77529 -15.69974 -15.49103 -14.94479 -14.71763 -14.45405 -14.31229 -14.10325 -13.89457 -13.54743 -13.32434 -13.18061 -13.02962 -12.78190 -12.68194 -12.46015 -12.27386 -11.99107 -11.72727 -11.20623 -11.17119 -10.99204 -10.91661 -10.58625 -10.10524 -9.96975 -9.56675 -9.33579 -9.12823 -8.78987 -8.58475 -8.18904 -8.12984 -6.30659 -3.82088 1.40554 2.07710 2.75930 3.03502 3.06877 3.08134 3.16050 3.37067 3.74968 4.09761 4.13468 4.46752 4.60884 4.69477 4.71946 4.78158 4.83462 4.93458 5.10506 5.22634 5.35993 5.43296 5.47743 5.54802 5.63331 5.64946 5.66188 5.72643 5.82827 5.83300 5.94509 6.07293 6.14214 6.25251 6.34108 6.48095 6.96729 7.09894 7.38502 7.57992 7.59732 8.14986 8.16099 8.60426 8.95445 9.43095 9.83396 10.82424 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.042080 B = 0.001829 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.234398 B =15302.230505 C =15800.668696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.047 3.953 7 C 0.450 3.550 8 O -0.566 6.566 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.127 3.873 19 N -0.727 5.727 20 C 0.587 3.413 21 O -0.546 6.546 22 C -0.229 4.229 23 C -0.142 4.142 24 C -0.023 4.023 25 N -0.551 5.551 26 H 0.418 0.582 27 C 0.046 3.954 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.350 0.650 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.371 0.629 37 H 0.273 0.727 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.148 0.852 42 H 0.170 0.830 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 -1.373 -30.916 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.448 6.448 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.003 3.997 19 N -0.379 5.379 20 C 0.376 3.624 21 O -0.425 6.425 22 C -0.240 4.240 23 C -0.166 4.166 24 C -0.151 4.151 25 N -0.146 5.146 26 H 0.254 0.746 27 C -0.091 4.091 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.171 0.829 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.166 0.834 42 H 0.188 0.812 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.994 -0.877 -30.931 30.959 hybrid contribution -0.277 -1.230 0.423 1.330 sum -1.271 -2.107 -30.508 30.607 Atomic orbital electron populations 1.21902 0.94764 1.02085 1.02219 1.21365 0.96422 1.01198 0.93096 0.89269 1.21889 1.00841 0.94424 0.89268 1.60079 1.21142 1.49049 0.99934 1.21709 1.01319 0.95404 0.90115 1.19719 0.85227 0.87882 0.83595 1.90556 1.43094 1.25691 1.85413 1.42207 1.51125 1.23687 1.05992 1.19433 1.33695 1.07601 0.82689 0.86292 1.25038 0.97843 0.98113 0.95157 1.69620 1.45628 1.38531 0.98375 0.86668 0.80896 0.83233 0.78563 1.19581 1.20198 1.19512 1.21347 1.00256 0.95195 0.82924 1.45831 1.58486 1.27910 1.05677 1.17414 0.78633 0.84238 0.82152 1.90770 1.40540 1.24418 1.86727 1.20508 1.10497 0.98953 0.94016 1.21989 1.03802 1.00257 0.90585 1.21838 1.03883 0.92722 0.96629 1.41614 1.44612 1.22284 1.06040 0.74584 1.21965 1.02310 0.97479 0.87333 0.92620 0.91454 0.92760 0.90692 0.95111 0.82923 0.93727 0.89400 0.79662 0.91622 0.91235 0.91420 0.76838 0.83445 0.81244 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.84 37.16 0.33 -1.00 16 2 C -0.10 -0.95 2.63 -90.62 -0.24 -1.18 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 4 C 0.07 0.74 5.14 -3.82 -0.02 0.72 16 5 N -0.67 -10.03 6.12 -115.05 -0.70 -10.74 16 6 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 7 C 0.45 10.21 7.82 -10.99 -0.09 10.12 16 8 O -0.57 -15.13 15.78 5.55 0.09 -15.04 16 9 N -0.59 -14.10 5.09 -10.97 -0.06 -14.16 16 10 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 11 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 14 Si 0.88 19.42 27.74 -169.99 -4.71 14.71 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 18 C 0.13 1.21 5.06 -4.05 -0.02 1.19 16 19 N -0.73 -6.48 5.27 -61.44 -0.32 -6.80 16 20 C 0.59 6.84 7.81 -12.59 -0.10 6.74 16 21 O -0.55 -8.60 16.97 5.26 0.09 -8.51 16 22 C -0.23 -2.14 6.29 -103.35 -0.65 -2.79 16 23 C -0.14 -1.24 10.97 -37.49 -0.41 -1.65 16 24 C -0.02 -0.13 11.89 -16.82 -0.20 -0.33 16 25 N -0.55 -2.26 5.90 -12.85 -0.08 -2.34 16 26 H 0.42 0.31 8.96 -40.82 -0.37 -0.06 16 27 C 0.05 0.26 11.40 -16.84 -0.19 0.07 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.67 6.68 -51.93 -0.35 0.32 16 30 H 0.05 0.38 7.18 -51.93 -0.37 0.01 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.35 5.40 6.69 -39.29 -0.26 5.14 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.40 2.48 6.60 -40.82 -0.27 2.21 16 41 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.17 0.44 7.45 -52.49 -0.39 0.05 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -37.39 363.51 -7.34 -44.73 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -6.03 Total: 12.82 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.87 Total: 4.87 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.39 Total: -59.04 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.18 Total: -23.55 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.39 -7.34 -44.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.674 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds