Wall clock time and date at job start Tue Mar 31 2020 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46849 * 2 1 4 4 C 1.52997 * 109.47244 * 239.99732 * 2 1 3 5 5 N 1.46903 * 109.46906 * 64.99932 * 4 2 1 6 6 C 1.46898 * 110.99817 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47243 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99869 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00267 * 179.97438 * 7 6 5 10 10 C 1.37101 * 120.00057 * 180.02562 * 9 7 6 11 11 H 1.08005 * 119.99487 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99917 * 180.02562 * 10 9 7 13 13 N 1.31405 * 119.99757 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99616 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47432 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47257 * 119.99803 * 14 12 10 17 17 H 1.48502 * 109.46897 * 239.99256 * 14 12 10 18 18 C 1.53002 * 109.47105 * 119.99961 * 2 1 3 19 19 N 1.46505 * 109.46979 * 295.00094 * 18 2 1 20 20 C 1.34773 * 119.99965 * 180.02562 * 19 18 2 21 21 O 1.21626 * 120.00210 * 359.97438 * 20 19 18 22 22 C 1.47261 * 120.00014 * 180.02562 * 20 19 18 23 23 C 1.46691 * 126.94252 * 180.02562 * 22 20 19 24 24 C 1.34483 * 106.33126 * 179.97438 * 23 22 20 25 25 N 1.36447 * 108.85936 * 359.97438 * 24 23 22 26 26 H 0.97001 * 124.84928 * 179.97438 * 25 24 23 27 27 C 1.34659 * 110.29687 * 0.27372 * 25 24 23 28 28 H 1.09003 * 109.46849 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47340 * 299.99527 * 1 2 3 30 30 H 1.08996 * 109.47099 * 60.00337 * 1 2 3 31 31 H 1.08994 * 109.47292 * 184.99832 * 4 2 1 32 32 H 1.08999 * 109.47279 * 305.00450 * 4 2 1 33 33 H 1.00893 * 111.00053 * 56.04587 * 5 4 2 34 34 H 1.08997 * 109.47329 * 299.99922 * 6 5 4 35 35 H 1.09011 * 109.47290 * 60.00417 * 6 5 4 36 36 H 0.96994 * 120.00116 * 0.02562 * 9 7 6 37 37 H 0.97007 * 119.99830 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46946 * 175.00437 * 18 2 1 39 39 H 1.08998 * 109.47175 * 54.99682 * 18 2 1 40 40 H 0.97002 * 119.99772 * 0.02562 * 19 18 2 41 41 H 1.08004 * 126.83281 * 359.97438 * 23 22 20 42 42 H 1.08007 * 125.56915 * 179.97438 * 24 23 22 43 43 H 1.07995 * 125.80124 * 179.73233 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6514 0.0374 -2.4456 6 6 2.1258 -0.6266 -3.6671 7 6 1.7087 0.1785 -4.8708 8 8 1.0787 1.2047 -4.7255 9 7 2.0367 -0.2413 -6.1089 10 6 1.6577 0.4914 -7.2039 11 1 1.0967 1.4052 -7.0744 12 6 1.9954 0.0584 -8.4803 13 7 2.6784 -1.0531 -8.6378 14 14 1.4796 1.0572 -9.9723 15 1 0.7264 2.2574 -9.5282 16 1 2.6870 1.4808 -10.7259 17 1 0.6150 0.2269 -10.8489 18 6 2.0400 -0.7212 1.2493 19 7 1.6524 0.0354 2.4424 20 6 1.9964 -0.4130 3.6659 21 8 2.6282 -1.4460 3.7796 22 6 1.6063 0.3473 4.8653 23 6 1.8980 0.0028 6.2610 24 6 1.3530 0.9759 7.0125 25 7 0.7538 1.8849 6.1901 26 1 0.2885 2.6815 6.4900 27 6 0.8949 1.5148 4.9031 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 1.9881 0.9872 -2.3967 34 1 3.2127 -0.7038 -3.6400 35 1 1.6921 -1.6247 -3.7300 36 1 2.5408 -1.0617 -6.2251 37 1 2.9145 -1.3552 -9.5288 38 1 3.1263 -0.7994 1.2056 39 1 1.6054 -1.7198 1.2952 40 1 1.1482 0.8591 2.3517 41 1 2.4423 -0.8604 6.6147 42 1 1.3844 1.0290 8.0908 43 1 0.5136 2.0503 4.0463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753615083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:08 Heat of formation + Delta-G solvation = -35.598524 kcal Electronic energy + Delta-G solvation = -23723.331303 eV Core-core repulsion = 19996.816322 eV Total energy + Delta-G solvation = -3726.514980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46637 -39.38231 -38.33018 -37.07126 -34.79942 -33.84183 -32.42204 -31.27148 -31.14300 -29.61099 -27.37885 -26.65228 -24.87950 -23.47255 -22.44933 -20.98824 -20.69309 -19.74693 -19.24780 -18.92711 -17.85652 -16.55391 -16.25841 -15.86934 -15.61446 -15.33136 -14.76193 -14.59530 -14.43172 -14.29725 -14.05451 -13.86327 -13.60710 -13.46171 -13.12828 -13.05532 -12.56764 -12.48766 -12.31998 -11.89057 -11.65712 -11.50783 -11.13362 -11.01094 -10.97339 -10.83252 -10.33902 -10.21796 -10.06905 -9.51101 -9.30888 -9.10248 -8.77150 -8.44693 -8.03450 -7.94622 -6.40872 -3.81672 1.42565 2.09467 2.77637 3.10187 3.16932 3.27414 3.34626 3.39555 3.92377 4.11193 4.33570 4.48724 4.64154 4.75355 4.76905 4.85858 4.98897 5.13161 5.20271 5.27470 5.39589 5.51565 5.53778 5.65437 5.71002 5.71503 5.80216 5.91267 5.93314 6.01006 6.15764 6.27978 6.28890 6.36253 6.42688 6.49777 6.98340 7.22494 7.41659 7.56148 7.67582 8.07609 8.19035 8.62330 9.18872 9.55666 10.06990 10.76951 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.045147 B = 0.001755 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.050131 B =15953.602482 C =16404.505115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.126 3.874 19 N -0.727 5.727 20 C 0.587 3.413 21 O -0.546 6.546 22 C -0.229 4.229 23 C -0.142 4.142 24 C -0.023 4.023 25 N -0.551 5.551 26 H 0.418 0.582 27 C 0.045 3.955 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.348 0.652 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.148 0.852 42 H 0.170 0.830 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 3.784 28.450 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.227 3.773 8 O -0.468 6.468 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.002 3.998 19 N -0.379 5.379 20 C 0.375 3.625 21 O -0.425 6.425 22 C -0.239 4.239 23 C -0.166 4.166 24 C -0.151 4.151 25 N -0.146 5.146 26 H 0.254 0.746 27 C -0.091 4.091 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.167 0.833 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.231 0.769 41 H 0.166 0.834 42 H 0.187 0.813 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.015 3.448 28.459 28.825 hybrid contribution 0.625 0.817 -0.799 1.303 sum -2.389 4.265 27.660 28.089 Atomic orbital electron populations 1.21755 0.93794 1.02211 1.01941 1.21340 0.97563 0.99924 0.93035 0.90590 1.21901 0.97395 0.97990 0.89185 1.60050 1.64139 1.05822 0.99810 1.21670 0.97769 0.98676 0.90111 1.19822 0.85490 0.87910 0.84096 1.90516 1.44112 1.26448 1.85765 1.41875 1.49455 1.24307 1.04462 1.19758 1.32779 1.06721 0.83623 0.87872 1.25265 0.96946 0.96659 0.99117 1.69622 1.38899 1.21800 1.23958 0.85798 0.78253 0.79566 0.80703 1.19240 1.20791 1.20752 1.21373 1.00024 0.95443 0.82983 1.45834 1.58419 1.27916 1.05691 1.17418 0.78670 0.84245 0.82159 1.90774 1.40532 1.24421 1.86724 1.20515 1.10439 0.98941 0.94027 1.21989 1.03803 1.00243 0.90591 1.21835 1.03898 0.92735 0.96620 1.41613 1.44641 1.22277 1.06047 0.74602 1.21962 1.02324 0.97500 0.87326 0.92752 0.93791 0.90482 0.95230 0.90700 0.83296 0.93859 0.89572 0.77447 0.91930 0.91493 0.91205 0.76858 0.83440 0.81251 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.95 37.16 0.33 -1.08 16 2 C -0.10 -0.98 2.57 -90.62 -0.23 -1.21 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.07 0.78 5.07 -3.82 -0.02 0.76 16 5 N -0.67 -10.35 5.58 -115.06 -0.64 -10.99 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.40 7.82 -10.98 -0.09 10.31 16 8 O -0.58 -15.77 15.78 5.54 0.09 -15.68 16 9 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 C 0.13 1.27 5.06 -4.04 -0.02 1.25 16 19 N -0.73 -6.76 5.27 -61.43 -0.32 -7.08 16 20 C 0.59 7.02 7.81 -12.59 -0.10 6.93 16 21 O -0.55 -8.79 16.97 5.25 0.09 -8.70 16 22 C -0.23 -2.19 6.29 -103.35 -0.65 -2.84 16 23 C -0.14 -1.26 10.97 -37.50 -0.41 -1.68 16 24 C -0.02 -0.13 11.89 -16.83 -0.20 -0.33 16 25 N -0.55 -2.36 5.90 -12.85 -0.08 -2.43 16 26 H 0.42 0.36 8.96 -40.82 -0.37 0.00 16 27 C 0.05 0.27 11.40 -16.84 -0.19 0.08 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.36 7.18 -51.93 -0.37 -0.02 16 30 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.35 5.56 8.43 -39.30 -0.33 5.23 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 36 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.40 2.63 6.60 -40.82 -0.27 2.36 16 41 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.17 0.44 8.06 -52.48 -0.42 0.01 16 43 H 0.17 0.48 7.45 -52.49 -0.39 0.09 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -35.97 368.89 -7.71 -43.67 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -6.19 Total: 12.91 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.85 Total: 5.00 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.38 Total: -58.81 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.18 Total: -24.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.97 -7.71 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753615083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.075 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds