Wall clock time and date at job start Tue Mar 31 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21629 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.47324 * 120.00358 * 179.97438 * 16 15 14 19 19 C 1.36680 * 126.20016 * 179.97438 * 18 16 15 20 20 N 1.34501 * 106.73420 * 179.97438 * 19 18 16 21 21 C 1.36617 * 107.93193 * 0.09023 * 20 19 18 22 22 N 1.29480 * 108.90390 * 359.62089 * 21 20 19 23 23 C 1.51112 * 122.83098 * 179.84837 * 21 20 19 24 24 O 1.43435 * 107.76332 * 345.50689 * 23 21 20 25 25 C 1.43014 * 114.08837 * 49.73735 * 24 23 21 26 26 C 1.46648 * 128.71884 * 180.14925 * 20 19 18 27 27 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 31 31 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 35 35 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 36 36 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 37 37 H 1.08003 * 126.63141 * 359.95145 * 19 18 16 38 38 H 1.09007 * 109.79280 * 225.94612 * 23 21 20 39 39 H 1.08997 * 109.80373 * 105.07789 * 23 21 20 40 40 H 1.08998 * 109.43733 * 169.47579 * 25 24 23 41 41 H 1.09001 * 109.39769 * 49.58689 * 25 24 23 42 42 H 1.08999 * 109.74031 * 283.23697 * 26 20 19 43 43 H 1.09001 * 109.73863 * 43.89288 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 1.9557 -0.1505 6.0117 10 14 0.6536 1.8766 4.6422 11 1 -0.7997 1.5720 4.6600 12 1 0.9828 2.7850 5.7698 13 1 1.0059 2.5339 3.3580 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6290 -1.4456 -3.7795 18 6 1.6063 0.3476 -4.8658 19 6 1.8866 0.0121 -6.1608 20 7 1.3494 0.9722 -6.9346 21 6 0.7488 1.8857 -6.1153 22 7 0.8973 1.5080 -4.8858 23 6 0.0391 3.1131 -6.6380 24 8 0.4171 3.2858 -8.0108 25 6 0.2886 2.1033 -8.8049 26 6 1.3630 1.0866 -8.3965 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1264 -0.7995 1.2056 31 1 1.6054 -1.7198 1.2950 32 1 1.1483 0.8591 2.3518 33 1 1.6960 0.3485 6.8020 34 1 3.1264 -0.7994 -1.2056 35 1 1.6054 -1.7198 -1.2953 36 1 1.1483 0.8592 -2.3518 37 1 2.4339 -0.8559 -6.4976 38 1 0.3389 3.9872 -6.0597 39 1 -1.0397 2.9745 -6.5667 40 1 0.4119 2.3580 -9.8575 41 1 -0.6991 1.6689 -8.6501 42 1 2.3418 1.4315 -8.7297 43 1 1.1425 0.1173 -8.8437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753621606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:20 Heat of formation + Delta-G solvation = -5.615051 kcal Electronic energy + Delta-G solvation = -24581.206894 eV Core-core repulsion = 20855.992095 eV Total energy + Delta-G solvation = -3725.214799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.92558 -39.57368 -38.70361 -36.84960 -34.84406 -34.35558 -32.42625 -31.17742 -30.53015 -30.28729 -27.23601 -26.37541 -25.47471 -24.35303 -23.13483 -21.77093 -20.50205 -20.13608 -19.89137 -18.50351 -17.53349 -17.22938 -16.85407 -16.39604 -16.04993 -15.57328 -15.38149 -15.23908 -14.57050 -14.49637 -14.25793 -14.17734 -13.78790 -13.63473 -13.27608 -13.06535 -12.63900 -12.45146 -12.33092 -12.12000 -12.01684 -11.38026 -10.98967 -10.97986 -10.72097 -10.65275 -10.54746 -10.52530 -10.21717 -10.12743 -9.98453 -9.53887 -9.07694 -8.85556 -8.78156 -7.18225 -5.72477 -3.07641 1.24543 1.92415 1.96500 2.92239 3.19771 3.40531 3.41286 3.43086 3.48104 3.54479 3.68490 4.08699 4.17693 4.33253 4.61906 4.62947 4.66581 4.77636 4.83578 4.90142 4.97510 5.14414 5.19312 5.35273 5.53934 5.58339 5.74851 5.82652 5.92762 5.97536 5.99254 6.12592 6.20949 6.32472 6.44110 6.51229 6.54804 6.72903 6.82854 7.28237 7.64882 8.04446 8.25176 8.46593 9.25874 9.98145 10.18253 11.46022 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026882 B = 0.002336 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.329512 B =11983.550125 C =12847.419828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.127 3.873 15 N -0.710 5.710 16 C 0.602 3.398 17 O -0.547 6.547 18 C -0.062 4.062 19 C 0.047 3.953 20 N -0.455 5.455 21 C 0.165 3.835 22 N -0.441 5.441 23 C 0.151 3.849 24 O -0.370 6.370 25 C 0.047 3.953 26 C 0.068 3.932 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.408 0.592 37 H 0.192 0.808 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 5.450 -36.071 36.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.583 5.583 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.004 3.996 15 N -0.361 5.361 16 C 0.388 3.612 17 O -0.425 6.425 18 C -0.191 4.191 19 C -0.092 4.092 20 N -0.138 5.138 21 C -0.099 4.099 22 N -0.162 5.162 23 C 0.073 3.927 24 O -0.287 6.287 25 C -0.031 4.031 26 C -0.054 4.054 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.194 0.806 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.243 0.757 37 H 0.209 0.791 38 H 0.148 0.852 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.699 5.138 -35.459 36.136 hybrid contribution -0.609 0.756 -0.506 1.095 sum -5.308 5.894 -35.966 36.830 Atomic orbital electron populations 1.21810 0.94758 1.02206 1.01298 1.21602 0.96691 1.00619 0.94471 0.90534 1.20553 0.97199 0.94215 0.84305 1.42696 1.67990 1.27019 1.02333 1.19074 1.29365 1.07017 0.81716 0.89175 1.24675 1.00892 0.98653 0.95109 1.69702 1.51418 1.40317 0.96876 0.86544 0.80431 0.84641 0.76917 1.21085 1.21759 1.20314 1.21422 1.00330 0.95261 0.82630 1.45839 1.56928 1.27992 1.05317 1.16803 0.78920 0.83637 0.81882 1.90804 1.41058 1.24072 1.86591 1.20745 1.08070 0.96910 0.93341 1.22446 1.01101 0.95255 0.90377 1.45208 1.41490 1.19118 1.08003 1.24193 1.03201 0.96589 0.85902 1.70206 1.15977 1.11203 1.18784 1.21315 0.97588 0.92647 0.81182 1.88178 1.87990 1.32634 1.19887 1.23005 0.97304 0.85570 0.97187 1.22857 1.03058 1.02606 0.76920 0.91924 0.93436 0.92417 0.95247 0.95095 0.80611 0.93108 0.91053 0.91058 0.75652 0.79071 0.85220 0.89409 0.85956 0.91314 0.88285 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.94 37.16 0.33 -1.78 16 2 C -0.11 -1.78 2.46 -90.62 -0.22 -2.00 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.17 3.24 5.65 -4.04 -0.02 3.22 16 5 N -0.75 -18.24 5.13 -59.91 -0.31 -18.55 16 6 C -0.24 -7.00 10.47 -15.06 -0.16 -7.15 16 7 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 8 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 9 N -0.93 -29.87 13.97 55.49 0.78 -29.10 16 10 Si 0.88 22.44 27.74 -169.99 -4.71 17.72 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 13 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 14 C 0.13 1.83 5.06 -4.04 -0.02 1.81 16 15 N -0.71 -9.68 5.28 -61.41 -0.32 -10.00 16 16 C 0.60 8.81 7.81 -12.57 -0.10 8.71 16 17 O -0.55 -9.39 16.88 5.25 0.09 -9.30 16 18 C -0.06 -0.77 6.99 -82.89 -0.58 -1.35 16 19 C 0.05 0.46 11.38 -16.95 -0.19 0.27 16 20 N -0.46 -3.51 3.12 -113.30 -0.35 -3.86 16 21 C 0.17 1.51 7.79 -154.60 -1.20 0.30 16 22 N -0.44 -5.22 10.99 -6.94 -0.08 -5.30 16 23 C 0.15 0.89 7.29 36.21 0.26 1.15 16 24 O -0.37 -2.10 10.78 -35.23 -0.38 -2.48 16 25 C 0.05 0.12 6.81 37.39 0.25 0.38 16 26 C 0.07 0.22 7.28 -3.73 -0.03 0.19 16 27 H 0.06 1.02 7.18 -51.93 -0.37 0.64 16 28 H 0.05 0.60 7.18 -51.93 -0.37 0.23 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.36 8.47 4.71 -40.82 -0.19 8.28 16 33 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.41 5.14 7.36 -40.82 -0.30 4.84 16 37 H 0.19 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.12 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.07 0.15 8.09 -51.93 -0.42 -0.27 16 42 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -37.08 356.58 -8.01 -45.09 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.32 Total: 6.70 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.77 Total: 3.72 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -0.29 Total: -66.81 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.29 Total: -11.78 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.08 -8.01 -45.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753621606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.473 kcal (2) G-P(sol) polarization free energy of solvation -37.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds