Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46969 * 2 1 4 4 C 1.52999 * 109.46957 * 239.99847 * 2 1 3 5 5 N 1.46501 * 109.47140 * 65.00194 * 4 2 1 6 6 C 1.36933 * 119.99730 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00586 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99868 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99734 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00098 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47171 * 90.00729 * 10 8 6 12 12 H 1.48506 * 109.46918 * 210.00372 * 10 8 6 13 13 H 1.48494 * 109.47098 * 330.00235 * 10 8 6 14 14 C 1.52999 * 109.47146 * 119.99715 * 2 1 3 15 15 N 1.46499 * 109.47364 * 294.99826 * 14 2 1 16 16 C 1.34772 * 120.00270 * 179.97438 * 15 14 2 17 17 O 1.21625 * 119.99932 * 0.02562 * 16 15 14 18 18 C 1.47324 * 120.00144 * 180.02562 * 16 15 14 19 19 C 1.36684 * 126.19510 * 180.02562 * 18 16 15 20 20 N 1.34498 * 106.73404 * 179.97438 * 19 18 16 21 21 C 1.36616 * 107.93185 * 0.06984 * 20 19 18 22 22 N 1.29485 * 108.90583 * 359.90803 * 21 20 19 23 23 C 1.51106 * 122.83984 * 179.87547 * 21 20 19 24 24 O 1.43445 * 107.75547 * 345.45562 * 23 21 20 25 25 C 1.43063 * 114.05618 * 49.78294 * 24 23 21 26 26 C 1.46647 * 128.72430 * 180.14369 * 20 19 18 27 27 H 1.09003 * 109.47186 * 300.00053 * 1 2 3 28 28 H 1.09000 * 109.47027 * 60.00082 * 1 2 3 29 29 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46703 * 184.99626 * 4 2 1 31 31 H 1.08997 * 109.47110 * 304.99807 * 4 2 1 32 32 H 0.96999 * 120.00175 * 359.97438 * 5 4 2 33 33 H 0.97005 * 120.00142 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.46966 * 175.00186 * 14 2 1 35 35 H 1.08998 * 109.47089 * 55.00057 * 14 2 1 36 36 H 0.97003 * 120.00057 * 0.02562 * 15 14 2 37 37 H 1.07999 * 126.63622 * 0.02562 * 19 18 16 38 38 H 1.08997 * 109.80174 * 105.02479 * 23 21 20 39 39 H 1.09001 * 109.80482 * 225.89461 * 23 21 20 40 40 H 1.09009 * 109.42220 * 169.46151 * 25 24 23 41 41 H 1.08999 * 109.42569 * 49.57454 * 25 24 23 42 42 H 1.09003 * 109.73347 * 283.21951 * 26 20 19 43 43 H 1.09002 * 109.73913 * 43.87280 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4424 6 6 2.0019 -0.4204 -3.6855 7 1 2.5636 -1.3373 -3.7864 8 6 1.6342 0.2962 -4.8161 9 7 0.9501 1.4139 -4.6931 10 14 2.1116 -0.3250 -6.5118 11 1 1.0426 -1.2146 -7.0321 12 1 2.2862 0.8287 -7.4305 13 1 3.3855 -1.0826 -6.4209 14 6 2.0400 -0.7212 1.2493 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4134 3.6660 17 8 2.6274 -1.4465 3.7796 18 6 1.6054 0.3472 4.8658 19 6 1.8850 0.0111 6.1609 20 7 1.3492 0.9720 6.9346 21 6 0.7470 1.8846 6.1155 22 7 0.9019 1.5108 4.8855 23 6 0.0329 3.1093 6.6383 24 8 -0.1761 2.9264 8.0456 25 6 0.9972 2.5325 8.7631 26 6 1.3676 1.0894 8.3963 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7994 -1.2056 31 1 1.6053 -1.7198 -1.2951 32 1 1.1482 0.8590 -2.3518 33 1 0.6935 1.9150 -5.4831 34 1 3.1263 -0.7994 1.2056 35 1 1.6054 -1.7197 1.2952 36 1 1.1483 0.8592 2.3518 37 1 2.4313 -0.8575 6.4977 38 1 0.6454 3.9947 6.4679 39 1 -0.9269 3.2207 6.1339 40 1 0.8056 2.5966 9.8343 41 1 1.8216 3.1960 8.5020 42 1 0.6418 0.4015 8.8299 43 1 2.3643 0.8575 8.7717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753621607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -9.926141 kcal Electronic energy + Delta-G solvation = -24496.627038 eV Core-core repulsion = 20771.225295 eV Total energy + Delta-G solvation = -3725.401742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.87463 -39.50623 -38.64524 -36.68468 -34.79238 -34.22004 -32.38728 -31.10492 -30.39434 -29.89998 -27.14873 -26.18745 -25.26164 -24.30884 -23.20500 -22.04286 -20.41753 -20.06207 -19.71311 -18.40761 -17.20834 -17.17142 -16.67365 -16.35712 -15.94087 -15.60913 -15.27561 -15.11186 -14.64300 -14.41151 -14.18289 -14.05405 -13.70037 -13.50703 -13.26495 -12.93433 -12.58593 -12.40169 -12.17357 -11.98232 -11.94893 -10.99439 -10.93494 -10.85289 -10.64000 -10.58775 -10.49540 -10.32759 -10.16861 -10.10573 -9.89555 -9.61606 -9.01111 -8.82321 -8.71764 -6.86185 -5.71626 -2.99677 1.29550 1.97498 2.01865 2.96724 3.26659 3.47246 3.47677 3.52566 3.54415 3.60482 3.72978 4.12943 4.21853 4.37499 4.64241 4.66676 4.70835 4.83137 4.88069 4.95260 5.13767 5.22673 5.33140 5.51368 5.58858 5.63343 5.92900 6.00854 6.06601 6.09018 6.16492 6.21811 6.37593 6.48757 6.49965 6.61877 6.74777 6.86545 6.95990 7.34321 7.72421 7.75615 8.31953 8.47617 9.58688 10.16974 10.51914 11.51441 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.033027 B = 0.002130 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.597167 B =13143.926689 C =13802.064993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.127 3.873 15 N -0.709 5.709 16 C 0.601 3.399 17 O -0.549 6.549 18 C -0.061 4.061 19 C 0.046 3.954 20 N -0.455 5.455 21 C 0.165 3.835 22 N -0.440 5.440 23 C 0.151 3.849 24 O -0.370 6.370 25 C 0.047 3.953 26 C 0.068 3.932 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.408 0.592 37 H 0.192 0.808 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 3.263 32.670 32.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.212 4.212 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.003 3.997 15 N -0.359 5.359 16 C 0.387 3.613 17 O -0.427 6.427 18 C -0.190 4.190 19 C -0.093 4.093 20 N -0.139 5.139 21 C -0.099 4.099 22 N -0.161 5.161 23 C 0.073 3.927 24 O -0.287 6.287 25 C -0.031 4.031 26 C -0.054 4.054 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.244 0.756 37 H 0.209 0.791 38 H 0.106 0.894 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.703 2.855 32.119 32.253 hybrid contribution 0.449 -0.245 -0.413 0.657 sum -0.254 2.610 31.707 31.815 Atomic orbital electron populations 1.21788 0.94640 1.01873 1.01595 1.21545 0.96789 1.00537 0.94060 0.90491 1.20579 0.96585 0.94194 0.85396 1.42347 1.66892 1.27716 1.00582 1.19246 1.28481 1.05389 0.83690 0.91161 1.24741 1.01151 0.97456 0.97839 1.69662 1.43668 1.16602 1.28409 0.86173 0.77999 0.77471 0.84468 1.21775 1.21831 1.20784 1.21444 1.00132 0.95252 0.82850 1.45851 1.56795 1.27978 1.05286 1.16808 0.78930 0.83646 0.81911 1.90795 1.41236 1.24099 1.86618 1.20758 1.08175 0.96724 0.93343 1.22434 1.01226 0.95241 0.90370 1.45206 1.41264 1.19413 1.07979 1.24197 1.02959 0.96862 0.85877 1.70217 1.15879 1.11175 1.18785 1.21318 1.01347 0.90032 0.80047 1.88189 1.32918 1.88654 1.18947 1.23008 0.89217 0.92153 0.98700 1.22848 1.04835 1.00706 0.77030 0.93705 0.91201 0.92901 0.96122 0.95987 0.78176 0.93574 0.91274 0.91265 0.75573 0.79112 0.89379 0.85191 0.85989 0.91299 0.88323 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.94 37.16 0.33 -1.96 16 2 C -0.11 -1.84 2.46 -90.62 -0.22 -2.06 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.16 3.33 5.65 -4.04 -0.02 3.30 16 5 N -0.73 -18.87 5.33 -59.91 -0.32 -19.19 16 6 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 9 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 10 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.13 1.94 5.06 -4.04 -0.02 1.92 16 15 N -0.71 -10.22 5.28 -61.42 -0.32 -10.54 16 16 C 0.60 9.17 7.81 -12.57 -0.10 9.07 16 17 O -0.55 -9.72 16.88 5.26 0.09 -9.63 16 18 C -0.06 -0.80 6.99 -82.89 -0.58 -1.38 16 19 C 0.05 0.47 11.38 -16.95 -0.19 0.28 16 20 N -0.46 -3.70 3.12 -113.31 -0.35 -4.05 16 21 C 0.17 1.58 7.79 -154.60 -1.20 0.38 16 22 N -0.44 -5.46 10.99 -6.94 -0.08 -5.53 16 23 C 0.15 0.95 7.29 36.20 0.26 1.21 16 24 O -0.37 -2.23 10.78 -35.23 -0.38 -2.61 16 25 C 0.05 0.14 6.81 37.39 0.25 0.39 16 26 C 0.07 0.25 7.28 -3.73 -0.03 0.22 16 27 H 0.04 0.63 7.18 -51.93 -0.37 0.25 16 28 H 0.07 1.29 7.18 -51.93 -0.37 0.92 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.38 10.32 6.85 -40.82 -0.28 10.04 16 33 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.41 5.52 7.36 -40.82 -0.30 5.22 16 37 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.12 0.05 8.14 -51.92 -0.42 -0.38 16 41 H 0.07 0.17 8.09 -51.93 -0.42 -0.25 16 42 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.11 0.15 8.14 -51.93 -0.42 -0.28 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -36.18 359.70 -8.37 -44.55 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.37 Total: 7.83 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.76 Total: 3.87 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -0.35 Total: -67.26 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.29 Total: -12.24 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.18 -8.37 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753621607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.621 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds