Wall clock time and date at job start Tue Mar 31 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47067 * 2 1 4 4 N 1.40054 * 125.99084 * 269.97542 * 3 2 1 5 5 C 1.30827 * 108.36546 * 179.76137 * 4 3 2 6 6 C 1.50704 * 125.89813 * 180.27179 * 5 4 3 7 7 C 1.40338 * 108.20907 * 0.40136 * 5 4 3 8 8 N 1.40473 * 126.11785 * 179.85187 * 7 5 4 9 9 C 1.34779 * 120.00413 * 317.40137 * 8 7 5 10 10 O 1.21401 * 119.99392 * 4.56120 * 9 8 7 11 11 C 1.49317 * 120.00647 * 184.56029 * 9 8 7 12 12 O 1.21372 * 119.99878 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00647 * 179.97438 * 11 9 8 14 14 C 1.46493 * 120.00160 * 180.02562 * 13 11 9 15 15 H 1.09004 * 109.47479 * 324.99668 * 14 13 11 16 16 C 1.52999 * 109.47576 * 85.00129 * 14 13 11 17 17 C 1.50703 * 109.46966 * 204.99753 * 14 13 11 18 18 H 1.08000 * 120.00069 * 330.23908 * 17 14 13 19 19 C 1.37877 * 119.99945 * 150.23327 * 17 14 13 20 20 N 1.31523 * 120.00043 * 172.97492 * 19 17 14 21 21 Si 1.86804 * 120.00211 * 352.97241 * 19 17 14 22 22 H 1.48497 * 109.47155 * 274.29299 * 21 19 17 23 23 H 1.48503 * 109.46722 * 34.29302 * 21 19 17 24 24 H 1.48501 * 109.47209 * 154.28890 * 21 19 17 25 25 C 1.35218 * 125.99860 * 89.99737 * 3 2 1 26 26 C 1.50706 * 126.17697 * 359.96231 * 25 3 2 27 27 H 1.09000 * 109.47497 * 60.00469 * 1 2 3 28 28 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47578 * 300.00210 * 1 2 3 30 30 H 1.08998 * 109.47578 * 239.99790 * 2 1 3 31 31 H 1.08998 * 109.47034 * 119.99285 * 2 1 3 32 32 H 1.09001 * 109.47105 * 278.01639 * 6 5 4 33 33 H 1.09006 * 109.46754 * 38.01333 * 6 5 4 34 34 H 1.09002 * 109.47310 * 158.01117 * 6 5 4 35 35 H 0.97006 * 119.99984 * 137.39756 * 8 7 5 36 36 H 0.97001 * 119.99458 * 0.02562 * 13 11 9 37 37 H 1.08998 * 109.47661 * 174.69884 * 16 14 13 38 38 H 1.09006 * 109.47000 * 294.70098 * 16 14 13 39 39 H 1.09004 * 109.47311 * 54.69431 * 16 14 13 40 40 H 0.96999 * 120.00234 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.46643 * 270.02239 * 26 25 3 42 42 H 1.08997 * 109.47047 * 30.01869 * 26 25 3 43 43 H 1.08997 * 109.47426 * 150.02541 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2931 2.1570 -1.1332 5 6 2.7037 3.3344 -0.7371 6 6 3.1007 4.4793 -1.6330 7 6 2.7134 3.3461 0.6662 8 7 3.0942 4.4240 1.4826 9 6 4.1851 5.1521 1.1722 10 8 4.7907 4.9297 0.1438 11 6 4.6488 6.2322 2.0930 12 8 4.0431 6.4548 3.1209 13 7 5.7400 6.9600 1.7828 14 6 6.1952 8.0192 2.6865 15 1 5.3321 8.4973 3.1500 16 6 7.0876 7.4148 3.7724 17 6 6.9778 9.0436 1.9059 18 1 7.5306 8.7461 1.0271 19 6 6.9879 10.3607 2.3135 20 7 7.7777 11.2274 1.7178 21 14 5.8798 10.9143 3.7118 22 1 4.5379 11.2549 3.1749 23 1 5.7518 9.8181 4.7055 24 1 6.4690 12.1097 4.3668 25 6 2.2832 2.1306 1.0940 26 6 2.1286 1.6959 2.5287 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 4.1293 4.3403 -1.9659 33 1 2.4394 4.5091 -2.4990 34 1 3.0205 5.4165 -1.0822 35 1 2.5720 4.6443 2.2699 36 1 6.2239 6.7823 0.9611 37 1 7.5020 8.2130 4.3882 38 1 6.4970 6.7439 4.3963 39 1 7.8996 6.8567 3.3063 40 1 7.7851 12.1539 2.0048 41 1 1.1224 1.9339 2.8739 42 1 2.2933 0.6210 2.6024 43 1 2.8581 2.2186 3.1473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438879708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:29 Heat of formation + Delta-G solvation = 1.141513 kcal Electronic energy + Delta-G solvation = -25502.977494 eV Core-core repulsion = 21778.055681 eV Total energy + Delta-G solvation = -3724.921813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.71218 -40.02671 -38.09068 -35.56010 -35.07885 -34.30997 -32.43021 -32.18537 -30.46260 -29.90404 -27.59183 -27.12731 -25.38474 -24.62335 -23.17216 -21.28637 -20.17801 -19.92633 -19.34769 -18.36105 -17.35010 -16.74652 -16.13595 -15.80994 -15.46129 -15.36028 -15.03654 -14.58039 -14.14449 -13.95102 -13.56537 -13.42249 -13.30273 -13.25931 -13.12060 -12.59733 -12.46992 -12.41703 -12.32615 -12.17223 -11.97263 -11.66042 -11.56776 -11.24384 -11.11292 -10.96205 -10.85405 -10.60221 -10.06815 -9.90504 -9.29449 -9.16511 -9.11884 -8.71762 -8.30894 -7.96043 -6.25896 -4.29773 1.50322 1.87348 2.13704 2.60852 2.91649 3.24145 3.31936 3.37403 3.69676 4.10896 4.26858 4.29426 4.35246 4.57506 4.66114 4.80404 4.84699 4.97085 5.12099 5.16825 5.17924 5.25165 5.36225 5.51081 5.61112 5.66302 5.83967 5.95296 6.01284 6.24466 6.36679 6.45476 6.59211 6.65867 6.80495 6.83902 7.02538 7.20760 7.29538 7.40948 7.60888 7.89878 8.15334 8.43545 8.61722 8.77684 9.34147 10.85674 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.003004 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.835832 B = 9318.835884 C = 9759.064512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.367 5.367 4 N -0.291 5.291 5 C 0.100 3.900 6 C -0.059 4.059 7 C -0.008 4.008 8 N -0.623 5.623 9 C 0.504 3.496 10 O -0.504 6.504 11 C 0.496 3.504 12 O -0.543 6.543 13 N -0.664 5.664 14 C 0.231 3.769 15 H 0.053 0.947 16 C -0.150 4.150 17 C -0.534 4.534 18 H 0.082 0.918 19 C 0.082 3.918 20 N -0.885 5.885 21 Si 0.872 3.128 22 H -0.272 1.272 23 H -0.259 1.259 24 H -0.285 1.285 25 C 0.070 3.930 26 C -0.091 4.091 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.417 0.583 36 H 0.407 0.593 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.048 0.952 40 H 0.269 0.731 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 -21.485 -0.277 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 N -0.151 5.151 4 N -0.114 5.114 5 C -0.068 4.068 6 C -0.118 4.118 7 C -0.112 4.112 8 N -0.273 5.273 9 C 0.286 3.714 10 O -0.377 6.377 11 C 0.275 3.725 12 O -0.422 6.422 13 N -0.313 5.313 14 C 0.129 3.871 15 H 0.071 0.929 16 C -0.208 4.208 17 C -0.572 4.572 18 H 0.100 0.900 19 C -0.122 4.122 20 N -0.521 5.521 21 Si 0.698 3.302 22 H -0.198 1.198 23 H -0.183 1.183 24 H -0.211 1.211 25 C -0.059 4.059 26 C -0.150 4.150 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.255 0.745 36 H 0.243 0.757 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.008 -22.109 -1.278 26.205 hybrid contribution -0.393 0.860 1.386 1.678 sum -14.401 -21.249 0.108 25.669 Atomic orbital electron populations 1.22196 0.94294 1.03003 1.03351 1.21627 0.95140 0.77624 1.04392 1.48185 1.52171 1.11858 1.02908 1.77328 1.23355 1.03315 1.07365 1.22409 0.97294 0.94537 0.92546 1.20225 1.02040 0.92862 0.96666 1.17086 1.14860 0.89098 0.90171 1.42388 1.27338 1.28878 1.28679 1.20724 0.80661 0.83262 0.86705 1.90766 1.54772 1.67671 1.24484 1.19843 0.83075 0.83237 0.86326 1.90707 1.56537 1.68873 1.26101 1.46523 1.25988 1.33387 1.25425 1.19305 0.94504 0.85007 0.88312 0.92893 1.22263 0.99637 1.00163 0.98773 1.20975 1.30610 0.91741 1.13862 0.90008 1.24904 0.94841 0.96194 0.96301 1.69886 1.36677 1.03964 1.41557 0.86931 0.81370 0.78802 0.83086 1.19765 1.18289 1.21057 1.20649 1.03450 0.90706 0.91102 1.20451 1.03657 1.02211 0.88646 0.91530 0.90508 0.91975 0.88597 0.89015 0.89357 0.91865 0.90886 0.74527 0.75747 0.92262 0.95089 0.93292 0.92136 0.90042 0.90837 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.13 0.90 6.97 -4.04 -0.03 0.87 16 3 N -0.37 -4.11 3.62 -56.94 -0.21 -4.32 16 4 N -0.29 -4.14 12.56 33.76 0.42 -3.71 16 5 C 0.10 1.48 6.85 -82.23 -0.56 0.91 16 6 C -0.06 -0.84 8.48 36.01 0.31 -0.53 16 7 C -0.01 -0.11 6.39 -83.96 -0.54 -0.65 16 8 N -0.62 -8.74 5.38 -10.49 -0.06 -8.79 16 9 C 0.50 8.43 7.09 -11.65 -0.08 8.34 16 10 O -0.50 -9.02 12.55 5.45 0.07 -8.95 16 11 C 0.50 9.49 7.85 -11.65 -0.09 9.40 16 12 O -0.54 -11.23 16.14 5.48 0.09 -11.15 16 13 N -0.66 -13.65 5.06 -55.41 -0.28 -13.93 16 14 C 0.23 5.38 2.13 -69.09 -0.15 5.24 16 15 H 0.05 1.32 4.94 -51.93 -0.26 1.06 16 16 C -0.15 -3.20 9.40 37.16 0.35 -2.85 16 17 C -0.53 -14.21 9.04 -34.44 -0.31 -14.53 16 18 H 0.08 2.32 8.05 -52.49 -0.42 1.89 16 19 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 20 N -0.88 -25.78 13.96 55.43 0.77 -25.01 16 21 Si 0.87 20.90 26.66 -169.99 -4.53 16.36 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.26 -6.01 6.79 56.52 0.38 -5.63 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.07 0.79 6.96 -81.95 -0.57 0.22 16 26 C -0.09 -0.66 10.07 36.01 0.36 -0.30 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.41 7.06 -51.93 -0.37 0.04 16 32 H 0.09 1.30 7.47 -51.93 -0.39 0.91 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.08 6.69 -51.93 -0.35 0.73 16 35 H 0.42 5.15 8.30 -40.82 -0.34 4.81 16 36 H 0.41 7.96 8.06 -40.82 -0.33 7.63 16 37 H 0.06 1.27 7.79 -51.93 -0.40 0.87 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.39 7.09 -51.93 -0.37 0.02 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -32.51 360.90 -5.49 -38.00 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.18 Total: 8.30 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -1.03 Total: 7.75 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.65 Total: -55.75 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.16 Total: -20.10 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.53 Total: 16.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.51 -5.49 -38.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438879708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.140 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds