Wall clock time and date at job start Tue Mar 31 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47067 * 2 1 4 4 N 1.40054 * 125.99084 * 269.97542 * 3 2 1 5 5 C 1.30827 * 108.36546 * 179.76137 * 4 3 2 6 6 C 1.50704 * 125.89813 * 180.27179 * 5 4 3 7 7 C 1.40338 * 108.20907 * 0.40136 * 5 4 3 8 8 N 1.40473 * 126.11785 * 179.85187 * 7 5 4 9 9 C 1.34779 * 120.00413 * 317.40137 * 8 7 5 10 10 O 1.21401 * 119.99392 * 4.56120 * 9 8 7 11 11 C 1.49317 * 120.00647 * 184.56029 * 9 8 7 12 12 O 1.21372 * 119.99878 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00647 * 179.97438 * 11 9 8 14 14 C 1.46493 * 120.00160 * 180.02562 * 13 11 9 15 15 H 1.09004 * 109.47479 * 324.99668 * 14 13 11 16 16 C 1.52999 * 109.47576 * 85.00129 * 14 13 11 17 17 C 1.50703 * 109.46966 * 204.99753 * 14 13 11 18 18 H 1.08000 * 120.00069 * 330.23908 * 17 14 13 19 19 C 1.37877 * 119.99945 * 150.23327 * 17 14 13 20 20 N 1.31523 * 120.00043 * 172.97492 * 19 17 14 21 21 Si 1.86804 * 120.00211 * 352.97241 * 19 17 14 22 22 H 1.48497 * 109.47155 * 274.29299 * 21 19 17 23 23 H 1.48503 * 109.46722 * 34.29302 * 21 19 17 24 24 H 1.48501 * 109.47209 * 154.28890 * 21 19 17 25 25 C 1.35218 * 125.99860 * 89.99737 * 3 2 1 26 26 C 1.50706 * 126.17697 * 359.96231 * 25 3 2 27 27 H 1.09000 * 109.47497 * 60.00469 * 1 2 3 28 28 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47578 * 300.00210 * 1 2 3 30 30 H 1.08998 * 109.47578 * 239.99790 * 2 1 3 31 31 H 1.08998 * 109.47034 * 119.99285 * 2 1 3 32 32 H 1.09001 * 109.47105 * 278.01639 * 6 5 4 33 33 H 1.09006 * 109.46754 * 38.01333 * 6 5 4 34 34 H 1.09002 * 109.47310 * 158.01117 * 6 5 4 35 35 H 0.97006 * 119.99984 * 137.39756 * 8 7 5 36 36 H 0.97001 * 119.99458 * 0.02562 * 13 11 9 37 37 H 1.08998 * 109.47661 * 174.69884 * 16 14 13 38 38 H 1.09006 * 109.47000 * 294.70098 * 16 14 13 39 39 H 1.09004 * 109.47311 * 54.69431 * 16 14 13 40 40 H 0.96999 * 120.00234 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.46643 * 270.02239 * 26 25 3 42 42 H 1.08997 * 109.47047 * 30.01869 * 26 25 3 43 43 H 1.08997 * 109.47426 * 150.02541 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2931 2.1570 -1.1332 5 6 2.7037 3.3344 -0.7371 6 6 3.1007 4.4793 -1.6330 7 6 2.7134 3.3461 0.6662 8 7 3.0942 4.4240 1.4826 9 6 4.1851 5.1521 1.1722 10 8 4.7907 4.9297 0.1438 11 6 4.6488 6.2322 2.0930 12 8 4.0431 6.4548 3.1209 13 7 5.7400 6.9600 1.7828 14 6 6.1952 8.0192 2.6865 15 1 5.3321 8.4973 3.1500 16 6 7.0876 7.4148 3.7724 17 6 6.9778 9.0436 1.9059 18 1 7.5306 8.7461 1.0271 19 6 6.9879 10.3607 2.3135 20 7 7.7777 11.2274 1.7178 21 14 5.8798 10.9143 3.7118 22 1 4.5379 11.2549 3.1749 23 1 5.7518 9.8181 4.7055 24 1 6.4690 12.1097 4.3668 25 6 2.2832 2.1306 1.0940 26 6 2.1286 1.6959 2.5287 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 4.1293 4.3403 -1.9659 33 1 2.4394 4.5091 -2.4990 34 1 3.0205 5.4165 -1.0822 35 1 2.5720 4.6443 2.2699 36 1 6.2239 6.7823 0.9611 37 1 7.5020 8.2130 4.3882 38 1 6.4970 6.7439 4.3963 39 1 7.8996 6.8567 3.3063 40 1 7.7851 12.1539 2.0048 41 1 1.1224 1.9339 2.8739 42 1 2.2933 0.6210 2.6024 43 1 2.8581 2.2186 3.1473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438879708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:29 Heat of formation + Delta-G solvation = -23.030328 kcal Electronic energy + Delta-G solvation = -25504.025664 eV Core-core repulsion = 21778.055681 eV Total energy + Delta-G solvation = -3725.969982 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.70329 -41.41636 -39.54752 -37.05434 -36.24508 -35.37400 -34.37315 -32.98491 -31.75720 -31.29287 -28.51000 -28.00378 -27.33378 -25.93963 -23.93107 -22.77672 -21.51892 -21.13141 -20.65393 -19.69530 -18.56752 -18.41248 -17.45484 -17.03500 -16.84224 -16.59758 -16.27171 -15.80134 -15.26645 -15.19272 -14.89270 -14.61012 -14.52505 -14.29046 -14.23629 -13.90576 -13.85348 -13.35320 -13.26633 -13.14782 -13.04877 -12.98401 -12.84968 -12.73925 -12.56271 -12.34768 -12.22069 -11.91045 -11.83380 -11.28639 -11.15223 -10.82236 -10.59059 -10.08249 -10.02323 -8.98162 -8.37589 -6.45377 0.30141 0.76629 1.18380 1.34690 1.38085 1.48098 1.53491 1.71744 2.26676 2.29464 2.76959 3.03840 3.49822 3.56291 3.62914 3.94018 4.10255 4.11534 4.33471 4.36115 4.41430 4.66926 4.68489 4.71176 4.72859 4.75107 4.78371 4.78908 4.90955 5.03321 5.04315 5.09793 5.23353 5.24590 5.27607 5.43911 5.54080 5.59488 5.94838 6.03440 6.16654 6.54637 6.60173 6.67084 6.87558 7.05269 7.23273 8.77507 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.003004 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.835832 B = 9318.835884 C = 9759.064512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.120 3.880 3 N -0.361 5.361 4 N -0.318 5.318 5 C 0.078 3.922 6 C -0.054 4.054 7 C -0.048 4.048 8 N -0.602 5.602 9 C 0.510 3.490 10 O -0.520 6.520 11 C 0.501 3.499 12 O -0.555 6.555 13 N -0.670 5.670 14 C 0.235 3.765 15 H 0.043 0.957 16 C -0.144 4.144 17 C -0.535 4.535 18 H 0.052 0.948 19 C 0.032 3.968 20 N -0.930 5.930 21 Si 0.929 3.071 22 H -0.272 1.272 23 H -0.245 1.245 24 H -0.278 1.278 25 C 0.091 3.909 26 C -0.092 4.092 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.426 0.574 36 H 0.410 0.590 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.272 0.728 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.762 -24.058 1.658 28.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.001 3.999 3 N -0.144 5.144 4 N -0.141 5.141 5 C -0.088 4.088 6 C -0.112 4.112 7 C -0.151 4.151 8 N -0.252 5.252 9 C 0.291 3.709 10 O -0.395 6.395 11 C 0.281 3.719 12 O -0.435 6.435 13 N -0.320 5.320 14 C 0.132 3.868 15 H 0.061 0.939 16 C -0.203 4.203 17 C -0.573 4.573 18 H 0.070 0.930 19 C -0.169 4.169 20 N -0.568 5.568 21 Si 0.752 3.248 22 H -0.197 1.197 23 H -0.168 1.168 24 H -0.203 1.203 25 C -0.040 4.040 26 C -0.150 4.150 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.265 0.735 36 H 0.246 0.754 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.954 -24.737 0.654 29.442 hybrid contribution 0.135 1.467 0.723 1.641 sum -15.819 -23.270 1.378 28.171 Atomic orbital electron populations 1.22154 0.93148 1.04480 1.02364 1.22114 0.96064 0.75511 1.06176 1.48665 1.50736 1.12867 1.02142 1.77258 1.24222 1.03554 1.09078 1.22508 0.98109 0.94926 0.93278 1.20106 1.01560 0.92510 0.97051 1.17298 1.17721 0.90200 0.89913 1.42129 1.26026 1.28376 1.28623 1.20155 0.81468 0.83130 0.86114 1.90774 1.55673 1.68130 1.24943 1.20128 0.82113 0.83237 0.86379 1.90689 1.56676 1.69350 1.26783 1.46298 1.26901 1.33404 1.25400 1.19093 0.93920 0.85200 0.88581 0.93919 1.22163 0.99618 1.00300 0.98206 1.21151 1.30269 0.92764 1.13085 0.92993 1.25657 0.96058 0.96357 0.98824 1.70000 1.38611 1.04497 1.43664 0.86018 0.79336 0.78886 0.80513 1.19690 1.16817 1.20320 1.21237 1.00386 0.89553 0.92828 1.20660 1.04916 1.03897 0.85516 0.93704 0.87792 0.91721 0.88340 0.85767 0.90653 0.90632 0.92097 0.73528 0.75388 0.92525 0.93600 0.92568 0.91919 0.87795 0.88123 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.24 71.98 0.74 -0.58 16 2 C 0.12 1.25 6.97 86.38 0.60 1.85 16 3 N -0.36 -7.28 3.62 -334.07 -1.21 -8.49 16 4 N -0.32 -8.83 12.56 -47.09 -0.59 -9.42 16 5 C 0.08 2.31 6.85 43.22 0.30 2.61 16 6 C -0.05 -1.56 8.48 71.24 0.60 -0.95 16 7 C -0.05 -1.27 6.39 37.71 0.24 -1.03 16 8 N -0.60 -16.24 5.38 -305.43 -1.64 -17.89 16 9 C 0.51 16.85 7.09 87.23 0.62 17.47 16 10 O -0.52 -18.84 12.55 -3.41 -0.04 -18.88 16 11 C 0.50 18.85 7.85 87.23 0.68 19.53 16 12 O -0.56 -22.20 16.14 -3.31 -0.05 -22.26 16 13 N -0.67 -27.54 5.06 -447.56 -2.27 -29.80 16 14 C 0.24 10.87 2.13 44.25 0.09 10.97 16 15 H 0.04 2.08 4.94 -2.38 -0.01 2.07 16 16 C -0.14 -5.97 9.40 71.98 0.68 -5.29 16 17 C -0.53 -28.95 9.04 25.60 0.23 -28.72 16 18 H 0.05 3.06 8.05 -2.91 -0.02 3.03 16 19 C 0.03 1.76 5.47 84.65 0.46 2.22 16 20 N -0.93 -55.32 13.96 21.45 0.30 -55.02 16 21 Si 0.93 42.87 26.66 68.60 1.83 44.70 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.24 -10.66 6.79 99.48 0.68 -9.98 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C 0.09 1.81 6.96 41.49 0.29 2.10 16 26 C -0.09 -0.96 10.07 71.24 0.72 -0.24 16 27 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 0.51 7.06 -2.39 -0.02 0.50 16 32 H 0.07 2.33 7.47 -2.39 -0.02 2.31 16 33 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.06 1.86 6.69 -2.39 -0.02 1.85 16 35 H 0.43 9.81 8.30 -92.70 -0.77 9.04 16 36 H 0.41 16.36 8.06 -92.71 -0.75 15.62 16 37 H 0.06 2.35 7.79 -2.39 -0.02 2.33 16 38 H 0.04 1.74 8.14 -2.38 -0.02 1.73 16 39 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.54 7.09 -2.39 -0.02 0.52 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -71.26 360.90 2.08 -69.18 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.49 Total: 27.93 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 6.25 Total: 19.94 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -5.41 Total: -120.61 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.10 Total: -41.14 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.83 Total: 44.70 kcal Total: -71.26 2.08 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438879708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.145 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds