Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46985 * 2 1 4 4 H 1.08992 * 109.49831 * 54.93618 * 3 2 1 5 5 C 1.52762 * 109.56535 * 294.96375 * 3 2 1 6 6 N 1.46926 * 109.01017 * 185.55326 * 5 3 2 7 7 C 1.34779 * 120.62913 * 233.58337 * 6 5 3 8 8 O 1.21274 * 120.00349 * 359.72273 * 7 6 5 9 9 C 1.50702 * 119.99647 * 179.72181 * 7 6 5 10 10 N 1.46499 * 109.47078 * 180.02562 * 9 7 6 11 11 N 1.28884 * 125.45201 * 89.99847 * 10 9 7 12 12 C 1.31035 * 107.91798 * 179.73806 * 11 10 9 13 13 N 1.33325 * 106.90110 * 359.97438 * 12 11 10 14 14 N 1.28781 * 125.44435 * 269.69328 * 10 9 7 15 15 C 1.46922 * 118.73730 * 53.31363 * 6 5 3 16 16 C 1.53189 * 108.77288 * 306.64336 * 15 6 5 17 17 C 1.53036 * 109.31802 * 54.63806 * 16 15 6 18 18 H 1.08999 * 109.46258 * 178.62923 * 17 16 15 19 19 N 1.46498 * 109.46251 * 58.65240 * 17 16 15 20 20 C 1.36937 * 120.00100 * 85.00016 * 19 17 16 21 21 H 1.07998 * 119.99718 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00028 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00013 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99755 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46974 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46968 * 120.00459 * 24 22 20 27 27 H 1.48500 * 109.47310 * 240.00211 * 24 22 20 28 28 H 1.08992 * 109.47543 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47203 * 300.00215 * 1 2 3 30 30 H 1.09001 * 109.47392 * 59.99689 * 1 2 3 31 31 H 1.08999 * 109.46784 * 240.00254 * 2 1 3 32 32 H 1.08993 * 109.46970 * 119.99835 * 2 1 3 33 33 H 1.09002 * 109.50831 * 65.67403 * 5 3 2 34 34 H 1.09003 * 109.43590 * 305.39140 * 5 3 2 35 35 H 1.09001 * 109.47511 * 59.99968 * 9 7 6 36 36 H 1.09007 * 109.46947 * 300.00184 * 9 7 6 37 37 H 1.07992 * 126.55167 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.58899 * 66.43044 * 15 6 5 39 39 H 1.09001 * 109.58984 * 186.71491 * 15 6 5 40 40 H 1.09007 * 109.49861 * 174.59174 * 16 15 6 41 41 H 1.09001 * 109.49673 * 294.64763 * 16 15 6 42 42 H 0.97006 * 120.00100 * 265.00747 * 19 17 16 43 43 H 0.97000 * 119.99486 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9822 0.8410 5 6 1.6377 2.1273 -1.3049 6 7 2.2451 3.4644 -1.3507 7 6 1.4856 4.5565 -1.5674 8 8 0.2896 4.4406 -1.7317 9 6 2.1226 5.9218 -1.6053 10 7 1.0931 6.9342 -1.8532 11 7 0.4165 7.5502 -0.9456 12 6 -0.4006 8.3804 -1.5457 13 7 -0.1952 8.2470 -2.8563 14 7 0.7235 7.3551 -3.0128 15 6 3.6952 3.5888 -1.1500 16 6 4.0736 2.8881 0.1587 17 6 3.5653 1.4450 0.1257 18 1 3.8544 0.9370 1.0456 19 7 4.1507 0.7475 -1.0219 20 6 5.3879 0.1706 -0.9141 21 1 5.9320 0.2296 0.0170 22 6 5.9429 -0.4899 -2.0016 23 7 5.2800 -0.5613 -3.1365 24 14 7.6303 -1.2774 -1.8543 25 1 8.1611 -1.0581 -0.4849 26 1 7.5206 -2.7353 -2.1147 27 1 8.5505 -0.6654 -2.8462 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5523 2.2173 -1.3492 34 1 1.9922 1.5359 -2.1492 35 1 2.8645 5.9546 -2.4031 36 1 2.6072 6.1232 -0.6499 37 1 -1.1052 9.0462 -1.0697 38 1 4.2209 3.1190 -1.9813 39 1 3.9674 4.6428 -1.0945 40 1 5.1578 2.8895 0.2718 41 1 3.6197 3.4152 0.9980 42 1 3.6619 0.6943 -1.8581 43 1 5.6680 -1.0226 -3.8965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037858366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = 109.771048 kcal Electronic energy + Delta-G solvation = -26282.123018 eV Core-core repulsion = 22594.204487 eV Total energy + Delta-G solvation = -3687.918532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.41382 -40.39073 -38.15009 -35.09229 -34.69780 -33.85718 -33.15683 -31.85227 -30.07637 -29.49892 -28.27016 -25.27118 -24.05671 -24.01229 -23.63145 -23.04648 -20.97684 -20.15514 -18.61328 -18.18945 -17.53063 -17.40190 -16.48783 -16.09107 -15.68509 -15.26971 -14.72282 -14.49193 -14.12328 -14.01631 -13.79830 -13.61417 -13.39129 -13.23195 -12.78751 -12.64098 -12.40036 -12.07637 -11.89041 -11.53772 -11.26737 -11.18741 -11.10464 -11.06457 -10.92248 -10.86079 -10.71552 -10.44337 -10.37802 -10.22218 -9.91935 -9.81602 -9.66133 -9.03463 -8.51273 -7.08467 -5.88285 -3.17526 1.08727 1.63984 2.16001 2.34057 2.93516 3.35084 3.41546 3.43822 3.93244 4.08379 4.26431 4.49144 4.50833 4.77531 4.90942 5.11066 5.18830 5.29058 5.36917 5.49223 5.57874 5.59555 5.62252 5.64910 5.67909 5.79477 5.90393 5.94422 6.01673 6.03870 6.19557 6.23169 6.31187 6.41342 6.46619 6.56888 6.62856 6.79171 6.86621 7.32978 7.60611 7.92907 8.26269 8.29802 9.41916 9.97031 10.31857 11.33851 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.003636 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.061682 B = 7699.817913 C = 8538.821097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.590 5.590 7 C 0.504 3.496 8 O -0.534 6.534 9 C 0.109 3.891 10 N -0.123 5.123 11 N -0.302 5.302 12 C 0.141 3.859 13 N -0.288 5.288 14 N -0.049 5.049 15 C 0.107 3.893 16 C -0.151 4.151 17 C 0.178 3.822 18 H 0.053 0.947 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.235 0.765 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 12.135 6.756 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.002 4.002 6 N -0.322 5.322 7 C 0.288 3.712 8 O -0.411 6.411 9 C -0.015 4.015 10 N -0.034 5.034 11 N -0.152 5.152 12 C -0.162 4.162 13 N -0.159 5.159 14 N -0.043 5.043 15 C -0.015 4.015 16 C -0.192 4.192 17 C 0.067 3.933 18 H 0.071 0.929 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.206 4.206 23 N -0.579 5.579 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.251 0.749 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.528 11.670 6.233 14.753 hybrid contribution 0.672 -0.258 0.248 0.762 sum -5.856 11.412 6.481 14.371 Atomic orbital electron populations 1.21861 0.96776 1.01165 1.01335 1.21415 0.94294 0.95533 1.03529 1.21687 0.97505 0.96322 0.96830 0.91478 1.21703 0.98876 0.80783 0.98858 1.48068 1.08834 1.06333 1.68966 1.20053 0.87316 0.85492 0.78353 1.90775 1.14410 1.85955 1.49958 1.22144 0.87166 0.84137 1.08023 1.49551 1.25965 1.26305 1.01592 1.74691 1.08994 1.09937 1.21544 1.27318 1.00490 0.99909 0.88448 1.75877 1.10595 1.12270 1.17191 1.79014 1.09142 1.07621 1.08487 1.21903 0.78628 0.99966 1.01035 1.22546 1.02195 0.99454 0.95010 1.20222 0.89603 0.90582 0.92855 0.92869 1.42491 1.19185 1.63977 1.10484 1.19244 0.93569 1.27212 0.97104 0.91157 1.24710 0.98571 1.01316 0.96009 1.69653 1.38065 1.47917 1.02219 0.86177 0.84179 0.78983 0.77154 1.20621 1.21950 1.21936 0.93046 0.93361 0.92843 0.90398 0.91856 0.89430 0.90187 0.83508 0.83739 0.74889 0.88769 0.91392 0.90306 0.93062 0.78099 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.63 5.19 -26.73 -0.14 -1.77 16 3 C -0.10 -1.53 2.12 -90.72 -0.19 -1.72 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 5 C 0.12 1.83 5.01 -3.93 -0.02 1.81 16 6 N -0.59 -8.15 2.98 -173.03 -0.52 -8.67 16 7 C 0.50 7.10 7.77 -10.98 -0.09 7.01 16 8 O -0.53 -9.70 15.84 5.56 0.09 -9.61 16 9 C 0.11 1.13 5.43 -5.19 -0.03 1.10 16 10 N -0.12 -1.61 3.49 -11.72 -0.04 -1.65 16 11 N -0.30 -3.89 12.13 29.34 0.36 -3.53 16 12 C 0.14 1.60 13.26 -91.58 -1.21 0.38 16 13 N -0.29 -4.04 12.50 29.33 0.37 -3.67 16 14 N -0.05 -0.72 13.25 60.35 0.80 0.08 16 15 C 0.11 1.36 6.09 -3.71 -0.02 1.34 16 16 C -0.15 -2.09 5.78 -26.61 -0.15 -2.25 16 17 C 0.18 2.96 2.53 -67.89 -0.17 2.78 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 N -0.72 -15.18 3.72 -53.39 -0.20 -15.37 16 20 C -0.24 -5.88 9.93 -15.06 -0.15 -6.03 16 21 H 0.07 1.70 7.83 -52.49 -0.41 1.28 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -25.88 13.06 55.49 0.72 -25.16 16 24 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 31 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.39 5.72 -51.93 -0.30 1.09 16 34 H 0.08 1.38 6.64 -51.93 -0.34 1.03 16 35 H 0.15 1.12 7.94 -51.93 -0.41 0.71 16 36 H 0.14 1.04 7.70 -51.93 -0.40 0.64 16 37 H 0.23 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.09 1.47 7.74 -51.93 -0.40 1.07 16 39 H 0.07 0.60 5.93 -51.93 -0.31 0.29 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.38 8.77 5.95 -40.82 -0.24 8.53 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -32.03 349.27 -6.17 -38.20 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.08 Total: 7.55 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.91 Total: 0.68 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 1.49 Total: -57.97 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.03 -6.17 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037858366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.971 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds