Wall clock time and date at job start Tue Mar 31 2020 03:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46971 * 2 1 4 4 C 1.52996 * 109.47290 * 240.00350 * 2 1 3 5 5 N 1.46494 * 109.47252 * 120.00028 * 2 1 3 6 6 N 1.28722 * 125.32009 * 359.97438 * 5 2 1 7 7 N 1.28978 * 108.99236 * 179.97438 * 6 5 2 8 8 C 1.34188 * 107.25220 * 359.97438 * 7 6 5 9 9 C 1.48001 * 126.70253 * 179.97438 * 8 7 6 10 10 O 1.21543 * 120.00033 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99984 * 0.29870 * 9 8 7 12 12 C 1.46505 * 120.00095 * 179.72370 * 11 9 8 13 13 H 1.08995 * 112.84634 * 23.80503 * 12 11 9 14 14 C 1.53783 * 113.61417 * 155.00393 * 12 11 9 15 15 C 1.53778 * 87.08016 * 139.97677 * 14 12 11 16 16 H 1.09004 * 113.61355 * 219.92671 * 15 14 12 17 17 N 1.46502 * 113.61032 * 89.11683 * 15 14 12 18 18 C 1.36939 * 120.00118 * 154.99992 * 17 15 14 19 19 H 1.08004 * 119.99563 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99991 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00198 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99798 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46843 * 89.99966 * 22 20 18 24 24 H 1.48492 * 109.47236 * 209.99923 * 22 20 18 25 25 H 1.48496 * 109.47088 * 330.00427 * 22 20 18 26 26 C 1.53780 * 87.08330 * 334.56785 * 15 14 12 27 27 N 1.28863 * 125.32365 * 180.24524 * 5 2 1 28 28 H 1.08998 * 109.46845 * 299.99821 * 1 2 3 29 29 H 1.09000 * 109.46945 * 60.00019 * 1 2 3 30 30 H 1.08997 * 109.46682 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46646 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47006 * 300.00261 * 3 2 1 33 33 H 1.09003 * 109.46818 * 60.00109 * 3 2 1 34 34 H 1.09002 * 109.47035 * 300.00018 * 4 2 1 35 35 H 1.09000 * 109.47428 * 59.99926 * 4 2 1 36 36 H 1.09001 * 109.47491 * 179.97438 * 4 2 1 37 37 H 0.97000 * 120.00112 * 359.72805 * 11 9 8 38 38 H 1.08994 * 113.61059 * 254.52914 * 14 12 11 39 39 H 1.08999 * 113.61315 * 25.34564 * 14 12 11 40 40 H 0.96993 * 120.00191 * 334.99708 * 17 15 14 41 41 H 0.96998 * 119.99789 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.61012 * 270.88171 * 26 15 14 43 43 H 1.09002 * 113.61471 * 139.97999 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 2.0184 -0.6906 1.1961 6 7 1.2763 -1.2160 2.1072 7 7 2.0307 -1.7397 3.0128 8 6 3.3029 -1.5276 2.6423 9 6 4.5190 -1.9500 3.3725 10 8 5.6183 -1.6916 2.9231 11 7 4.4074 -2.6261 4.5331 12 6 5.6111 -3.0496 5.2528 13 1 6.4838 -2.4427 5.0118 14 6 5.3910 -3.2398 6.7629 15 6 6.2900 -4.4830 6.6575 16 1 5.9434 -5.3246 7.2573 17 7 7.7137 -4.1956 6.8498 18 6 8.5576 -5.1801 7.2900 19 1 8.1735 -6.1683 7.4959 20 6 9.9066 -4.9079 7.4716 21 7 10.3747 -3.7037 7.2202 22 14 11.0576 -6.2507 8.0729 23 1 11.6167 -6.9819 6.9074 24 1 12.1648 -5.6412 8.8524 25 1 10.3063 -7.1966 8.9366 26 6 5.8718 -4.5634 5.1799 27 7 3.2580 -0.8627 1.5032 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6768 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2495 37 1 3.5301 -2.8324 4.8918 38 1 5.8184 -2.4421 7.3703 39 1 4.3586 -3.4672 7.0284 40 1 8.0585 -3.3080 6.6652 41 1 11.3172 -3.5135 7.3475 42 1 4.9712 -5.1540 5.0126 43 1 6.6875 -4.8341 4.5094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020179366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:06 Heat of formation + Delta-G solvation = 125.177876 kcal Electronic energy + Delta-G solvation = -24835.005659 eV Core-core repulsion = 21147.755218 eV Total energy + Delta-G solvation = -3687.250441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.64258 -39.84001 -38.21027 -37.80953 -34.22459 -33.68040 -32.95616 -32.28467 -29.71273 -28.22109 -28.14749 -26.02459 -25.09655 -24.73904 -24.01420 -22.62963 -21.19216 -20.70399 -19.03161 -17.86087 -17.62683 -17.35060 -16.95315 -16.08113 -15.07564 -14.88000 -14.84723 -14.57120 -14.48035 -14.16380 -13.93255 -13.49520 -13.11771 -13.08467 -12.97102 -12.71253 -12.46794 -12.44487 -12.18254 -12.07163 -11.97134 -11.74313 -11.65398 -11.27711 -11.22495 -10.86005 -10.80311 -10.57542 -10.27904 -10.23099 -10.15079 -9.76307 -9.67252 -8.90743 -8.77638 -6.98888 -5.77138 -3.07218 0.83260 1.31832 1.39534 2.82046 3.10305 3.45110 3.49948 3.51820 3.62349 3.91540 3.92925 4.03086 4.39744 4.58157 4.81142 4.84250 4.84867 5.00522 5.02142 5.04804 5.05782 5.11202 5.23737 5.31836 5.41580 5.43586 5.48595 5.49683 5.60875 5.85188 5.88967 5.98404 6.12129 6.17029 6.36883 6.59937 6.71370 6.77550 7.02093 7.47820 7.71664 7.97661 8.15107 8.41047 9.51861 10.07985 10.41990 11.45013 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.036958 B = 0.002299 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.442348 B =12176.069391 C =12507.214897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.126 5.126 6 N -0.058 5.058 7 N -0.258 5.258 8 C 0.130 3.870 9 C 0.611 3.389 10 O -0.506 6.506 11 N -0.692 5.692 12 C 0.124 3.876 13 H 0.118 0.882 14 C -0.163 4.163 15 C 0.172 3.828 16 H 0.071 0.929 17 N -0.705 5.705 18 C -0.245 4.245 19 H 0.073 0.927 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.184 4.184 27 N -0.246 5.246 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.407 0.593 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.072 0.928 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 9.187 -15.851 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.041 5.041 6 N -0.050 5.050 7 N -0.133 5.133 8 C -0.154 4.154 9 C 0.390 3.610 10 O -0.376 6.376 11 N -0.343 5.343 12 C 0.021 3.979 13 H 0.136 0.864 14 C -0.203 4.203 15 C 0.059 3.941 16 H 0.089 0.911 17 N -0.344 5.344 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.226 4.226 27 N -0.098 5.098 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.242 0.758 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.297 9.313 -16.211 29.871 hybrid contribution 0.751 -0.487 0.349 0.961 sum -22.546 8.825 -15.861 28.945 Atomic orbital electron populations 1.22108 0.89790 1.04736 1.04451 1.21524 0.96596 0.92910 0.79386 1.22270 1.03660 0.91804 1.04194 1.22267 1.03659 1.01112 0.94897 1.50748 1.00988 1.34295 1.18080 1.78850 1.21672 1.08979 0.95539 1.76119 1.00172 1.17623 1.19370 1.25515 0.94644 1.01829 0.93418 1.16216 0.84510 0.79018 0.81301 1.90887 1.25171 1.54971 1.66616 1.45891 1.11305 1.55385 1.21679 1.22858 0.86936 0.96673 0.91418 0.86407 1.23920 1.00803 1.01318 0.94228 1.20903 0.85671 0.94720 0.92811 0.91123 1.42208 1.01289 1.12594 1.78298 1.19270 0.89297 0.92073 1.36945 0.90889 1.24787 0.97098 0.96766 1.02149 1.69667 1.13950 1.19465 1.54671 0.86162 0.80710 0.80869 0.78252 1.21661 1.21772 1.20689 1.24351 1.01137 0.94233 1.02882 1.75014 1.02555 1.16983 1.15290 0.90483 0.89062 0.90485 0.90114 0.88922 0.91267 0.91257 0.88922 0.90120 0.75805 0.90597 0.89970 0.77949 0.93374 0.90963 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 7.90 37.16 0.29 -0.34 16 2 C 0.18 1.12 1.30 -131.82 -0.17 0.95 16 3 C -0.16 -0.83 8.66 37.16 0.32 -0.51 16 4 C -0.16 -0.84 8.66 37.16 0.32 -0.51 16 5 N -0.13 -1.37 3.72 0.52 0.00 -1.37 16 6 N -0.06 -0.69 12.21 60.35 0.74 0.04 16 7 N -0.26 -3.51 12.26 32.10 0.39 -3.12 16 8 C 0.13 1.93 8.14 -156.24 -1.27 0.66 16 9 C 0.61 10.12 7.84 -12.26 -0.10 10.02 16 10 O -0.51 -10.23 16.70 5.33 0.09 -10.14 16 11 N -0.69 -10.10 5.35 -53.91 -0.29 -10.39 16 12 C 0.12 2.09 4.12 -67.11 -0.28 1.81 16 13 H 0.12 2.32 7.46 -51.93 -0.39 1.94 16 14 C -0.16 -2.58 7.58 -25.92 -0.20 -2.77 16 15 C 0.17 3.34 4.56 -67.12 -0.31 3.04 16 16 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 17 N -0.71 -17.60 5.31 -52.63 -0.28 -17.88 16 18 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 22 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.18 -3.24 7.68 -25.92 -0.20 -3.44 16 27 N -0.25 -3.40 11.85 32.11 0.38 -3.02 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.41 4.93 8.48 -40.82 -0.35 4.58 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 40 H 0.39 10.30 7.90 -40.82 -0.32 9.98 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -34.03 367.12 -6.07 -40.11 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.52 Total: 8.82 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.83 Total: 1.55 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: 1.67 Total: -63.29 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.03 -6.07 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020179366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.287 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds