Wall clock time and date at job start Tue Mar 31 2020 04:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48502 * 109.47014 * 240.00299 * 3 2 1 5 5 H 1.48503 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47365 * 119.99979 * 3 2 1 7 7 C 1.38813 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99560 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64854 * 179.97438 * 9 7 2 11 11 C 1.54323 * 107.27386 * 178.97638 * 10 9 7 12 12 H 1.09000 * 110.71922 * 96.34261 * 11 10 9 13 13 N 1.46497 * 110.72150 * 219.44619 * 11 10 9 14 14 C 1.34773 * 119.99739 * 271.15204 * 13 11 10 15 15 O 1.21278 * 120.00069 * 0.02562 * 14 13 11 16 16 C 1.50709 * 119.99888 * 180.02562 * 14 13 11 17 17 H 1.08999 * 109.47411 * 60.00651 * 16 14 13 18 18 C 1.52943 * 109.47026 * 300.00224 * 16 14 13 19 19 C 1.52946 * 109.81969 * 177.02473 * 18 16 14 20 20 C 1.53179 * 109.45029 * 62.98609 * 19 18 16 21 21 C 1.53152 * 108.97831 * 303.36245 * 20 19 18 22 22 C 1.52840 * 117.68290 * 268.57083 * 21 20 19 23 23 C 1.52807 * 117.74947 * 199.68775 * 21 20 19 24 24 C 1.53171 * 109.47275 * 180.02562 * 16 14 13 25 25 C 1.55163 * 103.10036 * 337.89660 * 11 10 9 26 26 H 1.09001 * 111.00377 * 153.48765 * 25 11 10 27 27 O 1.42898 * 111.00270 * 277.33702 * 25 11 10 28 28 C 1.47426 * 125.64749 * 0.04050 * 9 7 2 29 29 H 0.97002 * 119.99547 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.88189 * 59.56146 * 10 9 7 31 31 H 1.09004 * 110.01256 * 298.46349 * 10 9 7 32 32 H 0.97000 * 120.00282 * 91.16076 * 13 11 10 33 33 H 1.08998 * 109.41299 * 56.91476 * 18 16 14 34 34 H 1.08993 * 109.35461 * 297.09519 * 18 16 14 35 35 H 1.09002 * 109.47335 * 302.98986 * 19 18 16 36 36 H 1.09002 * 109.47446 * 182.98000 * 19 18 16 37 37 H 1.09002 * 109.56900 * 63.24502 * 20 19 18 38 38 H 1.08994 * 109.57203 * 183.48540 * 20 19 18 39 39 H 1.08998 * 117.50712 * 359.72673 * 22 21 20 40 40 H 1.09001 * 117.50434 * 144.78690 * 22 21 20 41 41 H 1.09002 * 117.49847 * 215.11424 * 23 21 20 42 42 H 1.08999 * 117.50489 * 0.12611 * 23 21 20 43 43 H 1.09001 * 109.56638 * 296.37488 * 24 16 14 44 44 H 1.09000 * 109.57636 * 56.61436 * 24 16 14 45 45 H 0.96701 * 113.99812 * 179.97438 * 27 25 11 46 46 H 1.08995 * 110.36726 * 322.92731 * 28 9 7 47 47 H 1.09002 * 110.36999 * 85.14691 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.9318 -3.7275 0.0005 11 6 0.7784 -4.7525 0.0269 12 1 0.5485 -5.1002 -0.9803 13 7 1.1080 -5.8813 0.9005 14 6 1.7581 -6.9516 0.4023 15 8 2.0707 -6.9799 -0.7692 16 6 2.0966 -8.1131 1.3009 17 1 1.1793 -8.5316 1.7149 18 6 2.9966 -7.6312 2.4397 19 6 3.2849 -8.7880 3.3979 20 6 4.0555 -9.8846 2.6563 21 6 3.2433 -10.3250 1.4348 22 6 2.2732 -11.4929 1.6107 23 6 3.5676 -11.6847 0.8174 24 6 2.8290 -9.1880 0.4919 25 6 -0.4052 -3.9352 0.6089 26 1 -1.3607 -4.3373 0.2720 27 8 -0.3448 -3.8915 2.0359 28 6 -0.1415 -2.5331 -0.0008 29 1 -0.4849 0.8401 0.0004 30 1 2.5577 -3.8511 0.8843 31 1 2.5303 -3.8661 -0.8999 32 1 0.8582 -5.8585 1.8375 33 1 2.4969 -6.8281 2.9813 34 1 3.9347 -7.2606 2.0267 35 1 2.3445 -9.1935 3.7712 36 1 3.8824 -8.4264 4.2347 37 1 5.0212 -9.4967 2.3322 38 1 4.2080 -10.7360 3.3196 39 1 2.2139 -11.9541 2.5965 40 1 1.3392 -11.4603 1.0497 41 1 3.4851 -11.7782 -0.2655 42 1 4.3603 -12.2719 1.2810 43 1 2.1663 -9.5784 -0.2804 44 1 3.7153 -8.7553 0.0279 45 1 -1.0641 -3.3911 2.4449 46 1 -0.5999 -1.7588 0.6142 47 1 -0.5266 -2.4850 -1.0195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083457521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:37 Heat of formation + Delta-G solvation = -49.378209 kcal Electronic energy + Delta-G solvation = -26354.188602 eV Core-core repulsion = 22730.616433 eV Total energy + Delta-G solvation = -3623.572169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.31953 -38.92556 -37.70108 -34.94553 -34.71863 -33.87657 -31.74511 -31.13966 -28.57201 -27.67209 -26.91308 -24.69389 -23.51582 -22.74223 -21.77988 -20.63373 -20.16193 -19.57280 -18.81386 -17.41266 -16.73665 -16.64961 -15.73232 -15.31362 -15.14325 -14.85523 -14.67716 -14.36330 -14.13498 -13.76516 -13.45774 -13.16968 -12.97848 -12.85995 -12.68923 -12.44765 -12.04776 -11.76352 -11.69952 -11.33704 -11.31456 -11.26236 -11.08505 -11.05045 -10.83424 -10.64100 -10.58837 -10.37458 -10.12928 -10.03767 -9.82629 -9.76942 -9.45435 -9.19087 -8.69024 -8.62370 -6.84043 -5.68697 -3.08413 2.87592 3.36937 3.40990 3.44479 3.46266 3.59860 4.37854 4.46669 4.49040 4.58120 4.66437 4.74556 4.88465 4.93575 5.04239 5.14267 5.23634 5.33120 5.38878 5.42126 5.43195 5.45178 5.51685 5.64068 5.69398 5.74167 5.76762 5.83554 5.92404 5.93578 5.97701 5.99488 6.05016 6.10229 6.20467 6.25398 6.30120 6.60375 6.72466 6.98591 7.26900 7.56873 7.72398 7.88589 8.12859 8.32202 8.53582 9.18977 9.80008 10.43641 11.36402 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.027017 B = 0.002953 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.130997 B = 9480.984212 C = 9673.966179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.132 3.868 11 C 0.142 3.858 12 H 0.099 0.901 13 N -0.707 5.707 14 C 0.512 3.488 15 O -0.547 6.547 16 C -0.100 4.100 17 H 0.094 0.906 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.083 4.083 21 C -0.121 4.121 22 C -0.176 4.176 23 C -0.175 4.175 24 C -0.059 4.059 25 C 0.067 3.933 26 H 0.058 0.942 27 O -0.561 6.561 28 C 0.127 3.873 29 H 0.252 0.748 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.379 0.621 46 H 0.115 0.885 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -20.688 7.178 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.345 4.345 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.005 3.995 11 C 0.036 3.964 12 H 0.117 0.883 13 N -0.358 5.358 14 C 0.298 3.702 15 O -0.424 6.424 16 C -0.121 4.121 17 H 0.112 0.888 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.213 4.213 23 C -0.212 4.212 24 C -0.097 4.097 25 C 0.006 3.994 26 H 0.076 0.924 27 O -0.367 6.367 28 C 0.002 3.998 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.243 0.757 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.226 0.774 46 H 0.133 0.867 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.131 -20.817 6.222 21.832 hybrid contribution -0.211 1.210 0.384 1.287 sum 1.920 -19.608 6.605 20.779 Atomic orbital electron populations 1.69714 1.04903 1.24895 1.58192 1.24757 0.95768 0.97689 1.02547 0.86108 0.78378 0.82844 0.77931 1.21207 1.21572 1.21164 1.19057 0.90552 0.82323 1.42527 0.90481 1.44272 1.01422 0.99714 1.86841 1.21579 0.93894 0.85561 0.98436 1.22125 0.95130 0.85138 0.93972 0.88348 1.45870 1.58420 1.17388 1.14143 1.20664 0.77406 0.83613 0.88556 1.90686 1.53275 1.80979 1.17493 1.21278 1.00494 0.94222 0.96153 0.88768 1.21501 0.99985 0.98080 0.95381 1.21496 1.00581 0.95368 0.97629 1.21166 0.98060 0.98297 0.94471 1.21559 1.02247 0.89621 0.98704 1.23026 0.94241 1.02429 1.01586 1.22972 0.99222 0.99264 0.99779 1.20959 1.00521 0.92721 0.95489 1.23624 0.95613 0.98725 0.81394 0.92422 1.86235 1.54557 1.76881 1.19017 1.22630 0.85918 0.92411 0.98861 0.93693 0.95333 0.95544 0.75730 0.91117 0.91226 0.91700 0.91516 0.91387 0.91943 0.89010 0.88904 0.88813 0.88954 0.91286 0.90561 0.77378 0.86742 0.96071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.61 10.09 55.49 0.56 -26.05 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.52 3.40 -169.93 -0.58 -16.09 16 10 C 0.13 2.99 7.00 -3.07 -0.02 2.97 16 11 C 0.14 2.67 3.15 -66.09 -0.21 2.46 16 12 H 0.10 1.92 7.62 -51.93 -0.40 1.52 16 13 N -0.71 -11.08 4.95 -52.03 -0.26 -11.34 16 14 C 0.51 7.92 7.15 -10.98 -0.08 7.85 16 15 O -0.55 -10.52 15.64 5.56 0.09 -10.43 16 16 C -0.10 -1.14 2.53 -91.71 -0.23 -1.37 16 17 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.11 -1.14 5.03 -26.79 -0.13 -1.28 16 19 C -0.11 -0.93 5.93 -26.67 -0.16 -1.09 16 20 C -0.08 -0.68 5.66 -26.56 -0.15 -0.83 16 21 C -0.12 -1.09 1.98 -154.40 -0.31 -1.40 16 22 C -0.18 -1.41 9.93 -26.80 -0.27 -1.68 16 23 C -0.18 -1.43 10.00 -26.81 -0.27 -1.70 16 24 C -0.06 -0.67 4.29 -26.43 -0.11 -0.78 16 25 C 0.07 1.22 4.31 -24.45 -0.11 1.12 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 O -0.56 -9.47 12.23 -35.23 -0.43 -9.90 16 28 C 0.13 3.00 5.63 -2.40 -0.01 2.99 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.41 5.76 6.95 -40.82 -0.28 5.47 16 33 H 0.07 0.73 7.47 -51.93 -0.39 0.34 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 45 H 0.38 5.14 9.12 45.56 0.42 5.55 16 46 H 0.12 2.97 5.87 -51.93 -0.30 2.66 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -32.04 368.65 -9.64 -41.68 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.25 Total: 8.87 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.31 Total: 0.52 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.27 Total: -53.48 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.34 Total: -20.33 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.04 -9.64 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083457521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.694 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds