Wall clock time and date at job start Tue Mar 31 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86803 * 120.00001 * 2 1 4 4 H 1.48495 * 109.47190 * 270.00265 * 3 2 1 5 5 H 1.48498 * 109.46958 * 30.00350 * 3 2 1 6 6 H 1.48497 * 109.47087 * 150.00373 * 3 2 1 7 7 C 1.39893 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99698 * 198.06618 * 7 2 1 9 9 C 1.41197 * 120.00066 * 18.05613 * 7 2 1 10 10 C 1.40840 * 120.17245 * 23.20812 * 9 7 2 11 11 C 1.36423 * 119.81115 * 180.02562 * 10 9 7 12 12 C 1.39340 * 120.18121 * 359.97438 * 11 10 9 13 13 O 1.35659 * 119.81999 * 180.02562 * 12 11 10 14 14 C 1.35652 * 117.99895 * 77.97721 * 13 12 11 15 15 C 1.38944 * 119.68866 * 175.53063 * 14 13 12 16 16 C 1.38386 * 119.11109 * 179.97438 * 15 14 13 17 17 C 1.38829 * 118.48262 * 359.74687 * 16 15 14 18 18 C 1.50707 * 120.35175 * 180.24574 * 17 16 15 19 19 F 1.39897 * 109.47131 * 180.25218 * 18 17 16 20 20 F 1.39901 * 109.46868 * 300.25854 * 18 17 16 21 21 F 1.39906 * 109.46995 * 60.24996 * 18 17 16 22 22 C 1.38065 * 119.29438 * 0.49533 * 17 16 15 23 23 N 1.31938 * 120.84096 * 359.49584 * 22 17 16 24 24 C 1.39335 * 120.36252 * 0.27845 * 12 11 10 25 25 C 1.36419 * 120.18180 * 359.43923 * 24 12 11 26 26 H 0.96993 * 120.00152 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.09712 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.90966 * 179.97438 * 11 10 9 29 29 H 1.07999 * 120.44519 * 359.95633 * 15 14 13 30 30 H 1.08003 * 120.75382 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.58156 * 179.77409 * 22 17 16 32 32 H 1.07999 * 119.91334 * 179.72718 * 24 12 11 33 33 H 1.08006 * 120.09727 * 180.29961 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4402 0.6999 7 6 2.0083 -1.2115 -0.0005 8 1 3.0483 -1.2346 0.2895 9 6 1.3545 -2.4040 -0.3801 10 6 0.2102 -2.3540 -1.1997 11 6 -0.4160 -3.5107 -1.5615 12 6 0.0738 -4.7392 -1.1229 13 8 -0.5543 -5.8850 -1.4876 14 6 -0.3375 -6.3593 -2.7398 15 6 -0.8878 -7.5774 -3.1192 16 6 -0.6595 -8.0497 -4.3998 17 6 0.1106 -7.2806 -5.2616 18 6 0.3811 -7.7519 -6.6672 19 9 1.1788 -6.8122 -7.3288 20 9 1.0460 -8.9822 -6.6267 21 9 -0.8305 -7.8992 -7.3510 22 6 0.6302 -6.0818 -4.8156 23 7 0.3953 -5.6575 -3.5885 24 6 1.2022 -4.7971 -0.3075 25 6 1.8434 -3.6499 0.0585 26 1 -0.4850 0.8400 0.0004 27 1 -0.1709 -1.4026 -1.5401 28 1 -1.2938 -3.4742 -2.1896 29 1 -1.4855 -8.1482 -2.4239 30 1 -1.0748 -8.9930 -4.7227 31 1 1.2330 -5.4815 -5.4810 32 1 1.5731 -5.7529 0.0318 33 1 2.7208 -3.6967 0.6866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000121996.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:04 Heat of formation + Delta-G solvation = -125.837346 kcal Electronic energy + Delta-G solvation = -23994.600105 eV Core-core repulsion = 19763.779748 eV Total energy + Delta-G solvation = -4230.820358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.072 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.23499 -47.75942 -47.69774 -40.65907 -38.60873 -36.74027 -33.66588 -32.80746 -31.46865 -29.74258 -29.28541 -26.22466 -25.21149 -23.76910 -22.54014 -21.26353 -20.88834 -18.66601 -18.57105 -18.45469 -18.09449 -17.51482 -16.89461 -15.62777 -15.14826 -14.82714 -14.66912 -14.60268 -14.32956 -14.14866 -14.04908 -13.99098 -13.89003 -13.86712 -13.55365 -13.11441 -12.85429 -12.29881 -11.98800 -11.90644 -11.85066 -11.45132 -11.21232 -10.90667 -10.57583 -10.07583 -10.01367 -9.59158 -9.51101 -9.28024 -8.56028 -7.71909 -7.47139 -6.96878 -4.53203 0.88192 1.14223 2.35297 2.59113 2.94752 2.96578 3.00628 3.01465 3.58083 3.62974 3.78745 3.80684 3.94387 4.36355 4.41389 4.47573 4.66642 5.03082 5.10448 5.54976 5.60424 5.68162 5.84595 6.07730 6.15203 6.23307 6.76569 6.86747 6.92869 7.12866 7.30545 7.41337 7.81360 7.84190 7.86564 8.02994 8.23683 8.46828 8.67917 8.81275 9.95897 Molecular weight = 309.07amu Principal moments of inertia in cm(-1) A = 0.022863 B = 0.003074 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.370062 B = 9105.396107 C = 9715.228890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.447 4.447 8 H 0.083 0.917 9 C 0.118 3.882 10 C -0.163 4.163 11 C -0.076 4.076 12 C -0.079 4.079 13 O -0.225 6.225 14 C 0.351 3.649 15 C -0.204 4.204 16 C 0.004 3.996 17 C -0.302 4.302 18 C 0.523 3.477 19 F -0.177 7.177 20 F -0.180 7.180 21 F -0.180 7.180 22 C 0.197 3.803 23 N -0.512 5.512 24 C -0.070 4.070 25 C -0.222 4.222 26 H 0.285 0.715 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.167 0.833 32 H 0.093 0.907 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -10.907 -9.221 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.475 4.475 8 H 0.101 0.899 9 C 0.116 3.884 10 C -0.182 4.182 11 C -0.095 4.095 12 C -0.122 4.122 13 O -0.127 6.127 14 C 0.174 3.826 15 C -0.225 4.225 16 C -0.021 4.021 17 C -0.307 4.307 18 C 0.468 3.532 19 F -0.159 7.159 20 F -0.161 7.161 21 F -0.161 7.161 22 C 0.037 3.963 23 N -0.234 5.234 24 C -0.089 4.089 25 C -0.242 4.242 26 H 0.096 0.904 27 H 0.142 0.858 28 H 0.108 0.892 29 H 0.167 0.833 30 H 0.163 0.837 31 H 0.184 0.816 32 H 0.112 0.888 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.206 -10.048 -8.672 13.327 hybrid contribution 0.056 -0.017 -0.599 0.602 sum -1.151 -10.065 -9.271 13.733 Atomic orbital electron populations 1.69838 1.07751 1.29803 1.32961 1.26027 0.94803 1.01771 0.91966 0.86221 0.80500 0.79999 0.79583 1.19002 1.20108 1.18384 1.19705 0.98471 0.91277 1.38064 0.89888 1.17722 0.90897 0.92115 0.87710 1.20966 0.98921 0.96760 1.01541 1.20460 0.98198 0.92193 0.98635 1.18020 1.01331 0.82089 1.10722 1.84812 1.63556 1.40592 1.23783 1.21092 0.86380 0.88219 0.86916 1.21057 1.07221 0.96641 0.97601 1.20999 0.91678 0.97867 0.91549 1.20732 1.12834 1.02443 0.94662 1.18002 0.73987 0.74921 0.86316 1.93163 1.74557 1.65220 1.82922 1.93204 1.81204 1.44895 1.96827 1.93206 1.45249 1.95605 1.82057 1.22446 0.91879 0.90659 0.91270 1.67815 1.17839 1.34193 1.03505 1.20227 0.92897 0.97518 0.98260 1.20539 1.03389 0.92366 1.07879 0.90408 0.85772 0.89213 0.83275 0.83697 0.81550 0.88843 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.12 10.88 55.54 0.60 -18.51 16 2 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 3 Si 0.91 17.64 29.60 -169.99 -5.03 12.61 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.81 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.45 -11.26 9.04 -37.84 -0.34 -11.60 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.12 3.04 5.59 -106.81 -0.60 2.44 16 10 C -0.16 -4.12 8.65 -39.25 -0.34 -4.46 16 11 C -0.08 -1.79 9.56 -39.83 -0.38 -2.18 16 12 C -0.08 -1.80 5.14 -38.76 -0.20 -2.00 16 13 O -0.22 -4.56 9.94 -2.10 -0.02 -4.58 16 14 C 0.35 6.20 7.41 -17.09 -0.13 6.07 16 15 C -0.20 -2.75 10.05 -39.27 -0.39 -3.14 16 16 C 0.00 0.05 9.76 -39.31 -0.38 -0.34 16 17 C -0.30 -3.82 5.38 -104.46 -0.56 -4.38 16 18 C 0.52 6.02 3.33 36.01 0.12 6.14 16 19 F -0.18 -2.08 15.99 2.25 0.04 -2.04 16 20 F -0.18 -2.07 17.24 2.25 0.04 -2.03 16 21 F -0.18 -2.07 17.25 2.25 0.04 -2.03 16 22 C 0.20 2.88 10.59 -17.57 -0.19 2.69 16 23 N -0.51 -9.31 9.10 -13.32 -0.12 -9.43 16 24 C -0.07 -1.59 9.92 -39.83 -0.40 -1.98 16 25 C -0.22 -5.29 9.74 -39.25 -0.38 -5.67 16 26 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 27 H 0.12 3.22 6.06 -52.49 -0.32 2.90 16 28 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.17 2.10 7.16 -52.49 -0.38 1.72 16 32 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 33 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -26.73 310.35 -6.39 -33.13 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -2.36 Total: 4.94 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -4.26 Total: -16.73 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.48 Total: -27.94 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.02 Total: -4.58 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.11 Total: -6.10 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.73 -6.39 -33.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000121996.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.710 kcal (2) G-P(sol) polarization free energy of solvation -26.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds