Wall clock time and date at job start Tue Mar 31 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48500 * 109.47029 * 270.00331 * 3 2 1 5 5 H 1.48505 * 109.46974 * 29.99956 * 3 2 1 6 6 H 1.48497 * 109.47117 * 149.99973 * 3 2 1 7 7 C 1.38950 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99764 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99743 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00223 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99847 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47162 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00014 * 179.97438 * 13 12 10 15 15 O 1.21579 * 119.99918 * 0.02562 * 14 13 12 16 16 C 1.47606 * 119.99824 * 180.02562 * 14 13 12 17 17 C 1.39756 * 120.08720 * 359.97438 * 16 14 13 18 18 C 1.37676 * 119.90807 * 179.74374 * 17 16 14 19 19 C 1.39020 * 120.08860 * 0.55563 * 18 17 16 20 20 O 1.35715 * 119.91152 * 179.72237 * 19 18 17 21 21 C 1.38976 * 120.17830 * 359.44278 * 19 18 17 22 22 N 1.48010 * 119.95853 * 180.25495 * 21 19 18 23 23 O 1.21805 * 120.00044 * 179.97438 * 22 21 19 24 24 O 1.21799 * 119.99935 * 0.02562 * 22 21 19 25 25 C 1.37730 * 120.08324 * 0.27614 * 21 19 18 26 26 H 0.96994 * 120.00448 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00095 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.47369 * 59.99617 * 12 10 9 29 29 H 1.08999 * 109.47224 * 299.99130 * 12 10 9 30 30 H 0.97005 * 119.99813 * 359.97438 * 13 12 10 31 31 H 1.08001 * 120.04200 * 0.04176 * 17 16 14 32 32 H 1.08000 * 119.95564 * 180.29150 * 18 17 16 33 33 H 0.96701 * 113.99712 * 269.72631 * 20 19 18 34 34 H 1.07996 * 120.04114 * 179.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1960 -5.9764 -0.0027 14 6 1.7467 -7.2471 -0.0027 15 8 0.5514 -7.4693 -0.0028 16 6 2.7060 -8.3690 -0.0027 17 6 4.0804 -8.1157 -0.0031 18 6 4.9718 -9.1649 0.0023 19 6 4.5064 -10.4748 -0.0035 20 8 5.3884 -11.5063 -0.0038 21 6 3.1405 -10.7310 -0.0030 22 7 2.6504 -12.1276 -0.0035 23 8 1.4534 -12.3530 -0.0027 24 8 3.4441 -13.0515 -0.0038 25 6 2.2423 -9.6869 -0.0026 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3906 -0.0016 28 1 0.6175 -4.9204 -0.8924 29 1 0.6170 -4.9209 0.8876 30 1 3.1497 -5.7991 -0.0030 31 1 4.4426 -7.0982 -0.0028 32 1 6.0341 -8.9699 0.0068 33 1 5.6437 -11.8052 -0.8873 34 1 1.1810 -9.8867 -0.0027 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436712821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:34 Heat of formation + Delta-G solvation = -87.373454 kcal Electronic energy + Delta-G solvation = -23910.172157 eV Core-core repulsion = 19812.027196 eV Total energy + Delta-G solvation = -4098.144961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48979 -40.74097 -39.53564 -38.34260 -37.32805 -36.58832 -34.78112 -33.95976 -32.50166 -31.53833 -31.12255 -28.04557 -26.68340 -24.97329 -23.79122 -23.12931 -21.05530 -20.02934 -19.62005 -19.04554 -18.70903 -18.23080 -17.78323 -17.48865 -16.66706 -16.22365 -15.79685 -15.58014 -15.29151 -14.86792 -14.71001 -14.28336 -14.18327 -13.71153 -13.59463 -13.01752 -12.83746 -12.36934 -12.11832 -11.95071 -11.75255 -11.73630 -11.32567 -11.21545 -11.13489 -10.54895 -10.43520 -10.25911 -10.22874 -9.75333 -9.64687 -9.10382 -8.79832 -8.22668 -6.62545 -4.05216 -0.58888 0.05468 0.93456 1.04941 2.20448 2.88056 3.03023 3.08495 3.15461 3.18931 3.20319 3.59632 3.85854 3.99621 4.17457 4.22216 4.28229 4.53035 4.70102 5.01688 5.05713 5.07511 5.27656 5.38567 5.61366 5.72478 5.76569 5.89180 6.07882 6.32956 6.77823 7.35304 7.40229 7.40920 7.78624 8.02499 8.31443 8.92581 9.25876 9.72594 10.53988 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.036739 B = 0.002377 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.942767 B =11775.791479 C =12520.021135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.106 0.894 9 N -0.544 5.544 10 C 0.425 3.575 11 O -0.600 6.600 12 C 0.108 3.892 13 N -0.696 5.696 14 C 0.557 3.443 15 O -0.533 6.533 16 C -0.134 4.134 17 C -0.018 4.018 18 C -0.151 4.151 19 C 0.201 3.799 20 O -0.472 6.472 21 C -0.086 4.086 22 N 0.033 4.967 23 O -0.165 6.165 24 O -0.141 6.141 25 C 0.015 3.985 26 H 0.276 0.724 27 H 0.397 0.603 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.410 0.590 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.409 0.591 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -17.038 -1.745 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.124 0.876 9 N -0.179 5.179 10 C 0.210 3.790 11 O -0.488 6.488 12 C -0.020 4.020 13 N -0.350 5.350 14 C 0.342 3.658 15 O -0.411 6.411 16 C -0.138 4.138 17 C -0.036 4.036 18 C -0.170 4.170 19 C 0.153 3.847 20 O -0.285 6.285 21 C -0.170 4.170 22 N 0.553 4.447 23 O -0.378 6.378 24 O -0.360 6.360 25 C -0.004 4.004 26 H 0.086 0.914 27 H 0.231 0.769 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.250 0.750 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.270 0.730 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.938 -16.242 -1.149 18.115 hybrid contribution 0.143 0.567 -0.467 0.748 sum 8.081 -15.675 -1.616 17.709 Atomic orbital electron populations 1.69606 1.06056 1.28746 1.48750 1.25353 0.95680 1.00048 0.96539 0.85798 0.79237 0.80359 0.78564 1.20184 1.20711 1.19270 1.19731 0.93483 0.81903 1.48574 0.87586 1.41794 1.09560 1.04481 1.62023 1.19642 0.88260 0.84904 0.86173 1.90488 1.13649 1.86766 1.57871 1.21053 0.91672 0.85427 1.03798 1.45579 1.11913 1.04375 1.73165 1.17745 0.87801 0.82513 0.77752 1.90833 1.15601 1.84635 1.50001 1.19967 0.93984 0.93177 1.06719 1.21844 0.91593 1.01023 0.89189 1.21501 1.02247 0.89697 1.03528 1.18407 0.85429 0.88733 0.92140 1.84788 1.60803 1.48512 1.34387 1.21541 0.94147 0.82601 1.18755 1.43334 1.00892 1.02632 0.97864 1.94589 0.98867 1.90339 1.53956 1.94556 1.52704 1.36371 1.52387 1.21045 1.01879 0.89268 0.88251 0.91428 0.76946 0.89308 0.89300 0.75016 0.82517 0.82034 0.73018 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.92 13.05 55.50 0.72 -22.20 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 19.70 29.55 -169.99 -5.02 14.67 16 4 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.31 -7.95 9.68 -14.93 -0.14 -8.10 16 8 H 0.11 2.85 7.16 -52.49 -0.38 2.48 16 9 N -0.54 -12.69 5.29 -10.96 -0.06 -12.75 16 10 C 0.42 8.94 7.85 -10.99 -0.09 8.85 16 11 O -0.60 -14.06 15.24 5.54 0.08 -13.98 16 12 C 0.11 1.77 6.15 -5.19 -0.03 1.74 16 13 N -0.70 -9.92 5.48 -62.50 -0.34 -10.26 16 14 C 0.56 7.66 7.76 -12.44 -0.10 7.57 16 15 O -0.53 -8.97 16.34 5.30 0.09 -8.88 16 16 C -0.13 -1.42 5.87 -104.96 -0.62 -2.04 16 17 C -0.02 -0.14 9.53 -39.22 -0.37 -0.51 16 18 C -0.15 -0.97 9.97 -39.50 -0.39 -1.37 16 19 C 0.20 1.64 6.69 -39.02 -0.26 1.38 16 20 O -0.47 -3.36 11.49 -41.02 -0.47 -3.83 16 21 C -0.09 -0.91 6.86 -79.86 -0.55 -1.45 16 22 N 0.03 0.41 4.45 34.00 0.15 0.56 16 23 O -0.16 -2.26 18.44 -29.46 -0.54 -2.81 16 24 O -0.14 -1.76 17.23 -36.51 -0.63 -2.39 16 25 C 0.02 0.17 9.09 -39.22 -0.36 -0.19 16 26 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.40 8.89 7.90 -40.82 -0.32 8.57 16 28 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.41 5.44 5.46 -40.82 -0.22 5.21 16 31 H 0.16 1.00 6.39 -52.49 -0.34 0.67 16 32 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.41 1.03 9.06 45.56 0.41 1.44 16 34 H 0.17 1.95 7.19 -52.49 -0.38 1.58 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -32.36 318.65 -5.85 -38.20 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -1.62 Total: 12.38 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -3.00 Total: 6.47 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.48 Total: -44.65 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.47 Total: -31.88 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.36 -5.85 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436712821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.170 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds