Wall clock time and date at job start Tue Mar 31 2020 04:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99808 * 2 1 4 4 H 1.48500 * 109.46945 * 275.33703 * 3 2 1 5 5 H 1.48496 * 109.46997 * 35.33814 * 3 2 1 6 6 H 1.48498 * 109.46891 * 155.33721 * 3 2 1 7 7 C 1.38808 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00393 * 337.71736 * 7 2 1 9 9 N 1.36942 * 119.99864 * 158.00419 * 7 2 1 10 10 C 1.46504 * 119.99478 * 319.95618 * 9 7 2 11 11 C 1.50697 * 109.47385 * 270.64073 * 10 9 7 12 12 O 1.20828 * 120.00206 * 5.69898 * 11 10 9 13 13 O 1.34232 * 119.99938 * 185.69025 * 11 10 9 14 14 C 1.46495 * 120.00163 * 139.96305 * 9 7 2 15 15 C 1.50705 * 109.46995 * 84.89652 * 14 9 7 16 16 N 1.31069 * 126.65669 * 275.38028 * 15 14 9 17 17 N 1.28849 * 107.98742 * 179.89685 * 16 15 14 18 18 N 1.28735 * 109.39547 * 0.38076 * 17 16 15 19 19 N 1.29022 * 108.81004 * 359.76300 * 18 17 16 20 20 C 1.46502 * 126.43720 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47294 * 274.09060 * 20 19 18 22 22 F 1.39896 * 109.47425 * 60.00230 * 21 20 19 23 23 F 1.39899 * 109.47309 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.47024 * 299.99955 * 21 20 19 25 25 H 0.96994 * 120.00057 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46817 * 30.64782 * 10 9 7 27 27 H 1.09000 * 109.46427 * 150.64402 * 10 9 7 28 28 H 0.96696 * 116.99536 * 180.02562 * 13 11 10 29 29 H 1.09000 * 109.46971 * 204.89018 * 14 9 7 30 30 H 1.08998 * 109.47209 * 324.89589 * 14 9 7 31 31 H 1.09005 * 109.46941 * 34.08907 * 20 19 18 32 32 H 1.08996 * 109.47219 * 154.08470 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3849 2.1116 -1.3940 5 1 1.5086 2.6175 0.8098 6 1 3.5996 1.4103 0.5842 7 6 2.0103 -1.2021 0.0005 8 1 1.5308 -2.1023 0.3556 9 7 3.3049 -1.2455 -0.4436 10 6 3.7019 -0.4682 -1.6204 11 6 3.4993 -1.2977 -2.8621 12 8 2.9723 -2.3823 -2.7848 13 8 3.9040 -0.8316 -4.0540 14 6 4.2928 -2.0690 0.2577 15 6 4.2200 -3.4850 -0.2532 16 7 3.3989 -4.4223 0.1532 17 7 3.6458 -5.4893 -0.5256 18 7 4.6083 -5.2590 -1.3489 19 7 4.9895 -4.0341 -1.2113 20 6 6.0585 -3.3664 -1.9579 21 6 7.4006 -3.6292 -1.2720 22 9 7.6454 -5.0062 -1.2383 23 9 8.4215 -2.9911 -1.9847 24 9 7.3623 -3.1302 0.0344 25 1 -0.4850 0.8400 -0.0004 26 1 3.0930 0.4337 -1.6824 27 1 4.7529 -0.1920 -1.5355 28 1 3.7522 -1.3994 -4.8219 29 1 5.2911 -1.6695 0.0796 30 1 4.0821 -2.0574 1.3271 31 1 6.0884 -3.7552 -2.9758 32 1 5.8679 -2.2935 -1.9843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:08 Heat of formation + Delta-G solvation = -85.897096 kcal Electronic energy + Delta-G solvation = -27457.811515 eV Core-core repulsion = 22850.166585 eV Total energy + Delta-G solvation = -4607.644930 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.55891 -48.08908 -48.00359 -43.75855 -39.73781 -36.68241 -35.82004 -35.38460 -32.73648 -31.69039 -30.44530 -28.48626 -26.79994 -24.77183 -23.31384 -22.84893 -21.65384 -20.72576 -19.14933 -18.96208 -18.58534 -17.69906 -17.43549 -17.00119 -16.29718 -16.02063 -15.63905 -15.04370 -14.94329 -14.86831 -14.82910 -14.44261 -14.33940 -14.14171 -14.12184 -14.03991 -13.19878 -12.91147 -12.70741 -12.65251 -12.47298 -12.07876 -11.72389 -11.32505 -11.13604 -10.88117 -10.76193 -10.67385 -10.53310 -10.06586 -9.93898 -9.73956 -8.85976 -7.50855 -6.27813 -3.82326 1.35152 1.73226 2.30532 2.67089 2.73251 3.03393 3.17580 3.22631 3.26747 3.35055 3.40118 3.72346 4.12676 4.19421 4.33195 4.43551 4.54998 4.78420 5.02703 5.37342 5.52788 5.77425 5.79168 5.81854 6.01767 6.06187 6.33639 6.86761 7.53500 8.00783 8.35899 8.63590 9.01069 9.31954 9.53835 10.85178 Molecular weight = 309.08amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.006119 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.103536 B = 4574.483176 C = 4910.185829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.049 3.951 3 Si 0.863 3.137 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.286 4.286 8 H 0.094 0.906 9 N -0.554 5.554 10 C 0.128 3.872 11 C 0.428 3.572 12 O -0.490 6.490 13 O -0.534 6.534 14 C 0.213 3.787 15 C 0.213 3.787 16 N -0.283 5.283 17 N -0.068 5.068 18 N -0.102 5.102 19 N -0.323 5.323 20 C 0.080 3.920 21 C 0.446 3.554 22 F -0.167 7.167 23 F -0.168 7.168 24 F -0.171 7.171 25 H 0.269 0.731 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.392 0.608 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.726 -0.095 -5.271 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.155 4.155 3 Si 0.691 3.309 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.414 4.414 8 H 0.112 0.888 9 N -0.273 5.273 10 C -0.001 4.001 11 C 0.266 3.734 12 O -0.375 6.375 13 O -0.346 6.346 14 C 0.082 3.918 15 C -0.068 4.068 16 N -0.131 5.131 17 N -0.062 5.062 18 N -0.087 5.087 19 N -0.125 5.125 20 C -0.046 4.046 21 C 0.390 3.610 22 F -0.148 7.148 23 F -0.149 7.149 24 F -0.152 7.152 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.250 0.750 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.168 0.832 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.864 -1.381 -4.811 16.635 hybrid contribution 0.711 1.341 -0.991 1.813 sum 16.575 -0.040 -5.802 17.562 Atomic orbital electron populations 1.69880 1.06117 1.27338 1.47796 1.25492 0.95071 0.97838 0.97067 0.87136 0.81379 0.84804 0.77564 1.20883 1.21647 1.18343 1.18849 0.85538 0.95471 1.41542 0.88838 1.43988 1.08992 1.50669 1.23601 1.21568 1.01345 0.95125 0.82025 1.26213 0.75015 0.87164 0.85020 1.90722 1.38023 1.22402 1.86334 1.84685 1.77761 1.53589 1.18563 1.19784 0.93331 0.79933 0.98754 1.28100 0.88825 1.01201 0.88629 1.75096 1.19540 0.96450 1.21964 1.78553 1.06866 1.18612 1.02183 1.78808 1.12155 0.97055 1.20676 1.47916 1.26532 1.09416 1.28610 1.23016 0.81187 1.02263 0.98174 1.20495 0.87262 0.75261 0.77955 1.93282 1.95078 1.30205 1.96265 1.93246 1.61841 1.81819 1.78008 1.93260 1.96625 1.87224 1.38115 0.92031 0.87697 0.89534 0.74997 0.90953 0.86621 0.83157 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.88 13.97 55.49 0.78 -24.11 16 2 C 0.05 1.27 5.30 -17.43 -0.09 1.18 16 3 Si 0.86 18.62 25.15 -169.99 -4.27 14.35 16 4 H -0.28 -5.83 6.69 56.52 0.38 -5.45 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.29 -7.27 9.84 -15.06 -0.15 -7.42 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.55 -11.18 1.54 -175.99 -0.27 -11.46 16 10 C 0.13 2.24 4.99 -5.19 -0.03 2.22 16 11 C 0.43 7.44 7.59 36.00 0.27 7.71 16 12 O -0.49 -10.42 16.12 -18.75 -0.30 -10.72 16 13 O -0.53 -7.12 13.42 -39.26 -0.53 -7.65 16 14 C 0.21 3.55 5.93 -5.19 -0.03 3.52 16 15 C 0.21 3.92 6.75 -155.44 -1.05 2.87 16 16 N -0.28 -6.15 12.36 32.70 0.40 -5.75 16 17 N -0.07 -1.44 13.43 60.35 0.81 -0.63 16 18 N -0.10 -1.89 13.29 60.35 0.80 -1.09 16 19 N -0.32 -5.17 3.08 -58.27 -0.18 -5.35 16 20 C 0.08 0.86 6.07 -4.04 -0.02 0.83 16 21 C 0.45 4.60 3.29 37.15 0.12 4.72 16 22 F -0.17 -2.02 17.24 2.25 0.04 -1.98 16 23 F -0.17 -1.50 17.32 2.25 0.04 -1.46 16 24 F -0.17 -1.92 16.68 2.25 0.04 -1.88 16 25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.11 2.04 3.55 -51.93 -0.18 1.85 16 27 H 0.09 1.09 7.85 -51.93 -0.41 0.69 16 28 H 0.39 3.71 9.10 45.56 0.41 4.12 16 29 H 0.07 0.89 6.58 -51.93 -0.34 0.55 16 30 H 0.12 1.90 8.08 -51.93 -0.42 1.48 16 31 H 0.15 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.14 1.28 6.43 -51.93 -0.33 0.95 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -33.79 300.34 -0.37 -34.17 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -1.28 Total: 3.40 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: -0.97 Total: 15.63 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 2.34 Total: -48.37 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.83 Total: -18.37 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.12 Total: -5.32 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.27 Total: 14.35 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.79 -0.37 -34.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.730 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds