Wall clock time and date at job start Tue Mar 31 2020 04:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99808 * 2 1 4 4 H 1.48500 * 109.46945 * 275.33703 * 3 2 1 5 5 H 1.48496 * 109.46997 * 35.33814 * 3 2 1 6 6 H 1.48498 * 109.46891 * 155.33721 * 3 2 1 7 7 C 1.38808 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00393 * 337.71736 * 7 2 1 9 9 N 1.36942 * 119.99864 * 158.00419 * 7 2 1 10 10 C 1.46504 * 119.99478 * 319.95618 * 9 7 2 11 11 C 1.50697 * 109.47385 * 270.64073 * 10 9 7 12 12 O 1.20828 * 120.00206 * 5.69898 * 11 10 9 13 13 O 1.34232 * 119.99938 * 185.69025 * 11 10 9 14 14 C 1.46495 * 120.00163 * 139.96305 * 9 7 2 15 15 C 1.50705 * 109.46995 * 84.89652 * 14 9 7 16 16 N 1.31069 * 126.65669 * 275.38028 * 15 14 9 17 17 N 1.28849 * 107.98742 * 179.89685 * 16 15 14 18 18 N 1.28735 * 109.39547 * 0.38076 * 17 16 15 19 19 N 1.29022 * 108.81004 * 359.76300 * 18 17 16 20 20 C 1.46502 * 126.43720 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47294 * 274.09060 * 20 19 18 22 22 F 1.39896 * 109.47425 * 60.00230 * 21 20 19 23 23 F 1.39899 * 109.47309 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.47024 * 299.99955 * 21 20 19 25 25 H 0.96994 * 120.00057 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46817 * 30.64782 * 10 9 7 27 27 H 1.09000 * 109.46427 * 150.64402 * 10 9 7 28 28 H 0.96696 * 116.99536 * 180.02562 * 13 11 10 29 29 H 1.09000 * 109.46971 * 204.89018 * 14 9 7 30 30 H 1.08998 * 109.47209 * 324.89589 * 14 9 7 31 31 H 1.09005 * 109.46941 * 34.08907 * 20 19 18 32 32 H 1.08996 * 109.47219 * 154.08470 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3849 2.1116 -1.3940 5 1 1.5086 2.6175 0.8098 6 1 3.5996 1.4103 0.5842 7 6 2.0103 -1.2021 0.0005 8 1 1.5308 -2.1023 0.3556 9 7 3.3049 -1.2455 -0.4436 10 6 3.7019 -0.4682 -1.6204 11 6 3.4993 -1.2977 -2.8621 12 8 2.9723 -2.3823 -2.7848 13 8 3.9040 -0.8316 -4.0540 14 6 4.2928 -2.0690 0.2577 15 6 4.2200 -3.4850 -0.2532 16 7 3.3989 -4.4223 0.1532 17 7 3.6458 -5.4893 -0.5256 18 7 4.6083 -5.2590 -1.3489 19 7 4.9895 -4.0341 -1.2113 20 6 6.0585 -3.3664 -1.9579 21 6 7.4006 -3.6292 -1.2720 22 9 7.6454 -5.0062 -1.2383 23 9 8.4215 -2.9911 -1.9847 24 9 7.3623 -3.1302 0.0344 25 1 -0.4850 0.8400 -0.0004 26 1 3.0930 0.4337 -1.6824 27 1 4.7529 -0.1920 -1.5355 28 1 3.7522 -1.3994 -4.8219 29 1 5.2911 -1.6695 0.0796 30 1 4.0821 -2.0574 1.3271 31 1 6.0884 -3.7552 -2.9758 32 1 5.8679 -2.2935 -1.9843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072795.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:30:08 Heat of formation + Delta-G solvation = -112.656378 kcal Electronic energy + Delta-G solvation = -27458.971885 eV Core-core repulsion = 22850.166585 eV Total energy + Delta-G solvation = -4608.805300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.37294 -48.86994 -48.85732 -45.17474 -41.08760 -38.10983 -37.07991 -36.73944 -34.38474 -33.37655 -31.54932 -29.84585 -28.44674 -25.83774 -24.92434 -24.13801 -22.92892 -22.18068 -20.08653 -19.79365 -19.57735 -19.05551 -18.96492 -18.32536 -17.66098 -17.34660 -16.99323 -16.42068 -16.34043 -15.96189 -15.71278 -15.58515 -15.24771 -15.22012 -14.95636 -14.95331 -14.68215 -14.36547 -14.05720 -13.92433 -13.68118 -13.54173 -13.19819 -12.80243 -12.48512 -12.42457 -12.19177 -12.10812 -12.02329 -11.73516 -11.49639 -11.22247 -10.67099 -9.20540 -8.22121 -5.77517 0.05095 0.62182 1.21728 1.31301 1.36824 1.39778 1.53530 1.64634 2.16498 2.35380 2.41871 2.54315 2.84057 2.96117 3.14771 3.17170 3.23963 3.59259 3.68819 4.18048 4.26953 4.35738 4.42616 4.59030 4.68100 4.70828 5.06684 5.72045 5.81925 6.17691 6.70281 7.16190 7.41731 7.54937 7.70339 8.96317 Molecular weight = 309.08amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.006119 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.103536 B = 4574.483176 C = 4910.185829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.015 4.015 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.309 1.309 6 H -0.217 1.217 7 C -0.273 4.273 8 H 0.029 0.971 9 N -0.563 5.563 10 C 0.117 3.883 11 C 0.438 3.562 12 O -0.538 6.538 13 O -0.515 6.515 14 C 0.209 3.791 15 C 0.213 3.787 16 N -0.330 5.330 17 N -0.104 5.104 18 N -0.097 5.097 19 N -0.309 5.309 20 C 0.066 3.934 21 C 0.456 3.544 22 F -0.180 7.180 23 F -0.154 7.154 24 F -0.175 7.175 25 H 0.267 0.733 26 H 0.092 0.908 27 H 0.153 0.847 28 H 0.415 0.585 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.178 0.822 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.618 2.171 -6.835 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.213 4.213 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.237 1.237 6 H -0.139 1.139 7 C -0.402 4.402 8 H 0.047 0.953 9 N -0.282 5.282 10 C -0.011 4.011 11 C 0.278 3.722 12 O -0.426 6.426 13 O -0.327 6.327 14 C 0.079 3.921 15 C -0.068 4.068 16 N -0.178 5.178 17 N -0.098 5.098 18 N -0.083 5.083 19 N -0.111 5.111 20 C -0.058 4.058 21 C 0.400 3.600 22 F -0.162 7.162 23 F -0.135 7.135 24 F -0.156 7.156 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.170 0.830 28 H 0.275 0.725 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.195 0.805 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 19.844 0.885 -6.426 20.877 hybrid contribution -0.422 0.554 -0.667 0.965 sum 19.422 1.439 -7.093 20.727 Atomic orbital electron populations 1.70068 1.08723 1.28188 1.51364 1.26301 0.95615 1.02333 0.97016 0.85924 0.81177 0.78074 0.78381 1.18886 1.23698 1.13894 1.18405 0.87665 0.93289 1.40873 0.95319 1.43883 1.07575 1.51376 1.25413 1.21758 1.04764 0.93641 0.80896 1.25918 0.73931 0.86141 0.86172 1.90747 1.40182 1.24556 1.87148 1.84586 1.76633 1.53338 1.18170 1.20142 0.95128 0.78464 0.98326 1.28222 0.88477 1.01282 0.88845 1.74998 1.21554 0.97615 1.23627 1.78513 1.08417 1.19352 1.03488 1.78664 1.11401 0.98343 1.19913 1.48095 1.26713 1.08473 1.27857 1.23613 0.79716 1.03507 0.98928 1.20292 0.87236 0.74713 0.77743 1.93267 1.95156 1.31420 1.96309 1.93283 1.61139 1.81429 1.77638 1.93257 1.96652 1.87180 1.38550 0.92412 0.89087 0.82951 0.72467 0.85165 0.87101 0.80462 0.81397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.28 13.97 21.65 0.30 -55.98 16 2 C -0.01 -0.79 5.30 84.86 0.45 -0.34 16 3 Si 0.94 37.27 25.15 68.60 1.73 39.00 16 4 H -0.26 -9.53 6.69 99.48 0.67 -8.86 16 5 H -0.31 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.22 -7.08 7.11 99.48 0.71 -6.37 16 7 C -0.27 -14.19 9.84 84.03 0.83 -13.36 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 N -0.56 -21.51 1.54 -710.69 -1.09 -22.60 16 10 C 0.12 3.54 4.99 85.63 0.43 3.96 16 11 C 0.44 13.60 7.59 71.23 0.54 14.14 16 12 O -0.54 -22.00 16.12 21.96 0.35 -21.65 16 13 O -0.51 -11.12 13.42 -51.44 -0.69 -11.81 16 14 C 0.21 6.43 5.93 85.64 0.51 6.94 16 15 C 0.21 7.61 6.75 138.14 0.93 8.54 16 16 N -0.33 -14.78 12.36 -50.45 -0.62 -15.41 16 17 N -0.10 -4.53 13.43 37.01 0.50 -4.03 16 18 N -0.10 -3.56 13.29 37.02 0.49 -3.06 16 19 N -0.31 -9.26 3.08 -338.27 -1.04 -10.30 16 20 C 0.07 1.14 6.07 86.38 0.52 1.67 16 21 C 0.46 7.63 3.29 71.98 0.24 7.86 16 22 F -0.18 -3.91 17.24 44.97 0.78 -3.13 16 23 F -0.15 -2.04 17.32 44.97 0.78 -1.26 16 24 F -0.17 -3.25 16.68 44.97 0.75 -2.50 16 25 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.09 3.11 3.55 -2.39 -0.01 3.10 16 27 H 0.15 2.61 7.85 -2.39 -0.02 2.59 16 28 H 0.41 5.90 9.10 -74.06 -0.67 5.23 16 29 H 0.13 2.45 6.58 -2.39 -0.02 2.44 16 30 H 0.11 3.51 8.08 -2.39 -0.02 3.49 16 31 H 0.18 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.17 2.02 6.43 -2.39 -0.02 2.00 16 Total: -1.00 -81.19 300.34 7.18 -74.01 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.51 Total: 9.31 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: 4.45 Total: 29.41 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -1.47 Total: -111.39 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.34 Total: -33.45 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 2.30 Total: -6.89 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 1.73 Total: 39.00 kcal Total: -81.19 7.18 -74.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072795.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.647 kcal (2) G-P(sol) polarization free energy of solvation -81.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds