Wall clock time and date at job start Tue Mar 31 2020 04:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34127 * 125.70349 * 2 1 4 4 C 1.38460 * 107.36748 * 179.71470 * 3 2 1 5 5 C 1.46667 * 126.47607 * 180.26569 * 4 3 2 6 6 O 1.21319 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00385 * 180.02562 * 5 4 3 8 8 C 1.52996 * 109.47358 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47082 * 179.97438 * 8 7 5 10 10 O 1.20826 * 119.99656 * 359.97438 * 9 8 7 11 11 O 1.34228 * 120.00197 * 180.02562 * 9 8 7 12 12 C 1.45196 * 117.00310 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47308 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00019 * 179.97438 * 13 12 11 16 16 C 1.37100 * 120.00054 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99852 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00128 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00127 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00088 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47261 * 59.99929 * 20 18 16 22 22 H 1.48499 * 109.47250 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47411 * 299.99890 * 20 18 16 24 24 C 1.41547 * 107.04909 * 0.26657 * 4 3 2 25 25 N 1.30380 * 107.98461 * 359.97438 * 24 4 3 26 26 H 1.08999 * 109.47089 * 89.99458 * 1 2 3 27 27 H 1.08999 * 109.47111 * 209.99906 * 1 2 3 28 28 H 1.09001 * 109.46792 * 329.99969 * 1 2 3 29 29 H 1.08002 * 126.31958 * 359.97438 * 3 2 1 30 30 H 1.09000 * 109.46772 * 299.99975 * 7 5 4 31 31 H 1.08996 * 109.47034 * 59.99480 * 7 5 4 32 32 H 1.09000 * 109.47164 * 299.99741 * 8 7 5 33 33 H 1.08996 * 109.47468 * 59.99752 * 8 7 5 34 34 H 1.09008 * 109.46555 * 299.99667 * 12 11 9 35 35 H 1.08998 * 109.47049 * 59.99220 * 12 11 9 36 36 H 0.97000 * 120.00266 * 359.97438 * 15 13 12 37 37 H 0.96997 * 120.00196 * 180.02562 * 19 18 16 38 38 H 1.07998 * 126.00731 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2478 1.0892 0.0000 4 6 3.5621 0.6536 0.0066 5 6 4.7607 1.4988 0.0144 6 8 4.6510 2.7070 0.0152 7 6 6.1286 0.8665 0.0204 8 6 7.1967 1.9618 0.0274 9 6 8.5647 1.3294 0.0341 10 8 8.6739 0.1261 0.0337 11 8 9.6616 2.1029 0.0414 12 6 10.9459 1.4256 0.0469 13 6 12.0530 2.4478 0.0541 14 8 11.7860 3.6310 0.0541 15 7 13.3400 2.0474 0.0606 16 6 14.3472 2.9775 0.0666 17 1 14.1095 4.0310 0.0657 18 6 15.6739 2.5647 0.0738 19 7 15.9633 1.2829 0.0754 20 14 17.0463 3.8319 0.0813 21 1 16.9285 4.6821 1.2932 22 1 18.3598 3.1391 0.0890 23 1 16.9418 4.6821 -1.1318 24 6 3.5303 -0.7615 0.0043 25 7 2.2815 -1.1361 -0.0026 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9144 2.1165 -0.0004 30 1 6.2381 0.2460 0.9099 31 1 6.2474 0.2493 -0.8700 32 1 7.0871 2.5820 -0.8622 33 1 7.0781 2.5794 0.9176 34 1 11.0228 0.7999 0.9362 35 1 11.0322 0.8032 -0.8438 36 1 13.5535 1.1012 0.0610 37 1 16.8894 0.9947 0.0808 38 1 4.3895 -1.4159 0.0084 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339695607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:09 Heat of formation + Delta-G solvation = -84.683395 kcal Electronic energy + Delta-G solvation = -23420.069717 eV Core-core repulsion = 19457.874500 eV Total energy + Delta-G solvation = -3962.195217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.76805 -40.35986 -39.15060 -38.09514 -36.13572 -34.02170 -33.97020 -33.09149 -31.35238 -30.87532 -28.78985 -27.91386 -25.91979 -24.47229 -22.81604 -21.45872 -20.53386 -19.64370 -19.52955 -18.06725 -18.00709 -17.18169 -16.67415 -16.26475 -16.13792 -15.69335 -15.34043 -15.27523 -14.92862 -14.73731 -14.31468 -14.13417 -13.88661 -13.43184 -13.34764 -13.11326 -12.94149 -12.81997 -12.26300 -12.17764 -11.81180 -11.59483 -11.39646 -11.38003 -11.09009 -10.46819 -10.38587 -10.36734 -10.25345 -10.08973 -9.95133 -9.56885 -9.14675 -8.48695 -8.05476 -6.47334 -3.89330 0.90915 1.62663 1.86977 2.35723 2.72596 2.82710 3.17780 3.24739 3.29637 3.73207 3.77126 4.12235 4.20844 4.26502 4.49851 4.53068 4.59756 4.78438 4.81352 4.89644 4.92164 5.01789 5.15860 5.17704 5.36953 5.56958 5.61347 5.62247 5.73881 5.77879 5.99938 6.09235 6.28429 6.68636 7.06015 7.38680 7.50170 7.87908 7.99618 8.51702 9.09824 9.42276 9.92598 10.69839 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.057917 B = 0.001818 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.332997 B =15398.792008 C =15851.067098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.364 5.364 3 C 0.128 3.872 4 C -0.324 4.324 5 C 0.434 3.566 6 O -0.469 6.469 7 C -0.150 4.150 8 C -0.104 4.104 9 C 0.459 3.541 10 O -0.518 6.518 11 O -0.325 6.325 12 C 0.060 3.940 13 C 0.438 3.562 14 O -0.575 6.575 15 N -0.553 5.553 16 C -0.303 4.303 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.096 3.904 25 N -0.302 5.302 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.188 0.812 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.395 0.605 37 H 0.274 0.726 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.791 -5.682 -0.085 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.141 5.141 3 C -0.024 4.024 4 C -0.336 4.336 5 C 0.312 3.688 6 O -0.345 6.345 7 C -0.188 4.188 8 C -0.142 4.142 9 C 0.303 3.697 10 O -0.408 6.408 11 O -0.239 6.239 12 C -0.017 4.017 13 C 0.223 3.777 14 O -0.459 6.459 15 N -0.191 5.191 16 C -0.432 4.432 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.762 3.238 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.092 4.092 25 N -0.121 5.121 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.205 0.795 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.228 0.772 37 H 0.084 0.916 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -29.746 -5.711 -0.088 30.290 hybrid contribution 1.437 0.319 -0.008 1.472 sum -28.309 -5.392 -0.096 28.819 Atomic orbital electron populations 1.22036 0.73396 1.05146 1.04078 1.48487 1.07428 1.03998 1.54236 1.23275 0.90536 0.93820 0.94748 1.20926 0.94217 0.94513 1.23983 1.21326 0.88972 0.87823 0.70635 1.90565 1.89349 1.16369 1.38215 1.21774 0.91461 0.99114 1.06411 1.21102 0.86757 0.98962 1.07353 1.23695 0.87634 0.86045 0.72341 1.90645 1.87902 1.15983 1.46281 1.86560 1.14362 1.40240 1.82751 1.22739 0.80437 0.95067 1.03465 1.19353 0.83403 0.89078 0.85908 1.90567 1.82895 1.17337 1.55140 1.41699 1.03411 1.10019 1.63926 1.19685 0.84401 0.90881 1.48253 0.87670 1.25302 0.98559 0.96962 0.96907 1.69605 1.20525 1.14008 1.49692 0.85854 0.79050 0.79765 0.79181 1.19778 1.20895 1.19772 1.24300 0.95249 0.94010 0.95641 1.77204 1.02233 1.07631 1.25045 0.90056 0.88702 0.88907 0.79461 0.87282 0.87284 0.86935 0.86940 0.89538 0.89544 0.77164 0.91609 0.78623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.24 11.44 59.85 0.68 0.92 16 2 N -0.36 -2.50 3.97 -67.51 -0.27 -2.77 16 3 C 0.13 0.91 11.30 -16.47 -0.19 0.72 16 4 C -0.32 -2.75 6.11 -105.15 -0.64 -3.39 16 5 C 0.43 4.15 7.13 -30.91 -0.22 3.93 16 6 O -0.47 -5.75 16.53 5.52 0.09 -5.66 16 7 C -0.15 -1.34 4.47 -27.89 -0.12 -1.46 16 8 C -0.10 -1.17 5.10 -27.88 -0.14 -1.32 16 9 C 0.46 6.94 7.96 36.01 0.29 7.23 16 10 O -0.52 -8.42 15.73 -18.75 -0.29 -8.72 16 11 O -0.32 -6.08 9.75 -45.90 -0.45 -6.52 16 12 C 0.06 1.16 5.94 36.00 0.21 1.37 16 13 C 0.44 10.69 7.86 -10.99 -0.09 10.60 16 14 O -0.58 -16.24 16.08 -14.12 -0.23 -16.47 16 15 N -0.55 -14.10 5.29 -10.96 -0.06 -14.16 16 16 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 17 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 20 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C 0.10 0.76 11.55 -16.91 -0.20 0.57 16 25 N -0.30 -2.74 12.49 30.91 0.39 -2.35 16 26 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 29 H 0.19 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.11 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.11 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.11 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.09 1.50 8.13 -51.92 -0.42 1.08 16 35 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 36 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.20 1.04 8.04 -52.49 -0.42 0.62 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -36.60 350.35 -4.96 -41.56 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.47 Total: 6.26 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -0.65 Total: 11.16 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.78 Total: -42.71 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.88 Total: -37.37 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.60 -4.96 -41.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339695607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.121 kcal (2) G-P(sol) polarization free energy of solvation -36.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds