Wall clock time and date at job start Tue Mar 31 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99863 * 2 1 4 4 H 1.48500 * 109.47005 * 270.00237 * 3 2 1 5 5 H 1.48495 * 109.47033 * 30.00429 * 3 2 1 6 6 H 1.48506 * 109.46909 * 150.00190 * 3 2 1 7 7 C 1.37877 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99767 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99883 * 180.02562 * 7 2 1 10 10 N 1.46910 * 109.46959 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99698 * 169.99688 * 10 9 7 12 12 C 1.53236 * 109.33624 * 187.25282 * 11 10 9 13 13 N 1.47082 * 108.52118 * 306.17082 * 12 11 10 14 14 C 1.34784 * 120.87965 * 231.18434 * 13 12 11 15 15 O 1.21578 * 119.99736 * 7.35697 * 14 13 12 16 16 C 1.47617 * 119.99610 * 187.34817 * 14 13 12 17 17 N 1.33059 * 120.53390 * 7.43186 * 16 14 13 18 18 N 1.28710 * 120.36929 * 179.72125 * 17 16 14 19 19 C 1.32948 * 121.55381 * 359.97438 * 18 17 16 20 20 O 1.35284 * 119.46837 * 180.02562 * 19 18 17 21 21 N 1.32464 * 121.06061 * 0.02562 * 19 18 17 22 22 C 1.32865 * 119.51641 * 359.97438 * 21 19 18 23 23 O 1.35285 * 120.72130 * 179.97438 * 22 21 19 24 24 C 1.47073 * 118.23838 * 51.45977 * 13 12 11 25 25 C 1.46901 * 110.99901 * 294.29993 * 10 9 7 26 26 H 0.97001 * 120.00086 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47696 * 59.99462 * 9 7 2 28 28 H 1.08997 * 109.47027 * 299.99122 * 9 7 2 29 29 H 1.09003 * 109.49101 * 67.29755 * 11 10 9 30 30 H 1.08999 * 109.51672 * 307.22470 * 11 10 9 31 31 H 1.08996 * 109.62859 * 186.46337 * 12 11 10 32 32 H 1.09002 * 109.63330 * 65.87833 * 12 11 10 33 33 H 0.96708 * 114.00056 * 89.99965 * 20 19 18 34 34 H 0.96696 * 114.00317 * 270.00326 * 23 22 21 35 35 H 1.09004 * 109.63253 * 68.25250 * 24 13 12 36 36 H 1.09000 * 109.62999 * 188.83059 * 24 13 12 37 37 H 1.09003 * 109.48811 * 292.70799 * 25 10 9 38 38 H 1.08999 * 109.49108 * 52.78284 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4501 -2.6250 -0.2377 12 6 5.8899 -4.0827 -0.4107 13 7 5.4259 -4.8520 0.7539 14 6 6.2759 -5.6320 1.4509 15 8 7.4663 -5.6047 1.2053 16 6 5.7613 -6.5192 2.5126 17 7 4.4514 -6.6689 2.6926 18 7 4.0062 -7.4474 3.6158 19 6 4.8286 -8.1225 4.4130 20 8 4.3147 -8.9296 5.3694 21 7 6.1429 -8.0175 4.2859 22 6 6.6485 -7.2255 3.3466 23 8 7.9870 -7.0997 3.1956 24 6 4.0086 -4.7523 1.1339 25 6 3.6441 -3.2638 1.2496 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6807 0.8904 28 1 3.8751 -0.6797 -0.8895 29 1 5.9723 -2.1860 0.6124 30 1 5.6890 -2.0635 -1.1409 31 1 6.9770 -4.1323 -0.4727 32 1 5.4494 -4.4928 -1.3195 33 1 4.1641 -9.8392 5.0773 34 1 8.3770 -6.3881 3.7214 35 1 3.3907 -5.2255 0.3707 36 1 3.8513 -5.2448 2.0935 37 1 4.1914 -2.8157 2.0790 38 1 2.5728 -3.1654 1.4249 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363626607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:50 Heat of formation + Delta-G solvation = -19.756296 kcal Electronic energy + Delta-G solvation = -25673.736779 eV Core-core repulsion = 21746.649763 eV Total energy + Delta-G solvation = -3927.087015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.45671 -41.20468 -39.68496 -38.91638 -38.81708 -36.12633 -35.58635 -34.46562 -33.39499 -31.91719 -30.50128 -28.03266 -27.00503 -26.25299 -24.69288 -23.67711 -22.49340 -21.23642 -21.09211 -20.57516 -19.68551 -18.92275 -18.42681 -17.73021 -17.31683 -17.03797 -16.54887 -16.31655 -16.03164 -15.65620 -15.61354 -15.33055 -15.10411 -14.51845 -14.31555 -14.26248 -14.08563 -13.80320 -13.41259 -13.10310 -12.91777 -12.80084 -12.75616 -12.47373 -12.21622 -12.11239 -11.83496 -11.79631 -11.39286 -11.36425 -11.23275 -10.75545 -10.54190 -9.87445 -9.05461 -8.25427 -6.28602 -1.30038 -1.04513 1.17141 1.28191 1.36998 1.37993 1.47843 1.62857 1.70631 2.01173 2.31721 2.36253 2.99457 3.07370 3.19053 3.24047 3.58827 3.95147 4.03109 4.15434 4.21753 4.34032 4.41913 4.63355 4.78705 4.82935 4.92842 4.98805 5.04284 5.13138 5.21634 5.33737 5.54916 5.92305 6.13826 6.15541 6.19897 6.31103 6.62706 6.68592 6.78231 6.84480 7.34955 8.90734 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.003488 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.557698 B = 8026.277544 C = 8978.396026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.515 4.515 8 H 0.044 0.956 9 C 0.172 3.828 10 N -0.540 5.540 11 C 0.039 3.961 12 C 0.123 3.877 13 N -0.587 5.587 14 C 0.581 3.419 15 O -0.532 6.532 16 C -0.060 4.060 17 N -0.112 5.112 18 N -0.301 5.301 19 C 0.493 3.507 20 O -0.446 6.446 21 N -0.513 5.513 22 C 0.434 3.566 23 O -0.445 6.445 24 C 0.100 3.900 25 C 0.053 3.947 26 H 0.266 0.734 27 H -0.015 1.015 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.446 0.554 34 H 0.441 0.559 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.022 0.978 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.476 -16.068 7.667 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.045 3.955 10 N -0.265 5.265 11 C -0.089 4.089 12 C 0.001 3.999 13 N -0.318 5.318 14 C 0.365 3.635 15 O -0.408 6.408 16 C -0.212 4.212 17 N 0.030 4.970 18 N -0.164 5.164 19 C 0.189 3.811 20 O -0.253 6.253 21 N -0.257 5.257 22 C 0.236 3.764 23 O -0.256 6.256 24 C -0.024 4.024 25 C -0.076 4.076 26 H 0.075 0.925 27 H 0.002 0.998 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.313 0.687 34 H 0.308 0.692 35 H 0.100 0.900 36 H 0.153 0.847 37 H 0.040 0.960 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.767 -16.409 7.401 23.283 hybrid contribution 0.853 1.315 0.687 1.711 sum 15.620 -15.094 8.088 23.178 Atomic orbital electron populations 1.70041 1.08059 1.28016 1.52578 1.25789 0.95522 1.02935 0.94486 0.85766 0.79254 0.78969 0.79227 1.18931 1.21059 1.17746 1.21252 0.90918 0.93404 1.49738 0.93799 1.19943 0.94411 0.86081 0.95102 1.61840 1.12578 1.17159 1.34892 1.22544 0.87888 0.96874 1.01631 1.21891 1.01240 0.89505 0.87243 1.48171 1.10552 1.43581 1.29512 1.17146 0.85570 0.80023 0.80770 1.90836 1.14627 1.67788 1.67544 1.23930 0.93207 1.01906 1.02154 1.74021 1.10554 1.04635 1.07777 1.73938 1.32110 1.07655 1.02656 1.21947 0.83612 0.90454 0.85136 1.84673 1.81917 1.27215 1.31474 1.68329 1.15629 1.20695 1.21025 1.19778 0.87038 0.84484 0.85101 1.84646 1.12469 1.59488 1.69020 1.22961 0.79385 0.95484 1.04545 1.22431 1.01386 0.93847 0.89945 0.92495 0.99751 0.94854 0.95394 0.88441 0.87491 0.89332 0.68651 0.69159 0.89998 0.84711 0.96013 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 2 C 0.01 0.58 5.47 84.66 0.46 1.04 16 3 Si 0.94 43.08 27.47 68.60 1.88 44.96 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.51 -28.77 8.96 25.60 0.23 -28.54 16 8 H 0.04 2.72 7.37 -2.91 -0.02 2.70 16 9 C 0.17 7.88 3.79 85.55 0.32 8.21 16 10 N -0.54 -20.95 4.62 -898.86 -4.15 -25.11 16 11 C 0.04 1.18 5.62 86.38 0.49 1.67 16 12 C 0.12 3.15 6.61 86.35 0.57 3.72 16 13 N -0.59 -15.84 3.00 -820.72 -2.46 -18.31 16 14 C 0.58 14.97 7.66 86.72 0.66 15.63 16 15 O -0.53 -14.87 14.76 16.34 0.24 -14.63 16 16 C -0.06 -1.36 6.70 42.05 0.28 -1.08 16 17 N -0.11 -2.68 7.45 -48.09 -0.36 -3.04 16 18 N -0.30 -6.75 11.60 -174.24 -2.02 -8.77 16 19 C 0.49 9.19 8.81 180.33 1.59 10.78 16 20 O -0.45 -5.71 13.63 -85.69 -1.17 -6.87 16 21 N -0.51 -9.92 10.57 -424.98 -4.49 -14.41 16 22 C 0.43 8.57 7.84 85.16 0.67 9.24 16 23 O -0.45 -7.44 11.79 -65.41 -0.77 -8.21 16 24 C 0.10 2.89 6.08 86.50 0.53 3.42 16 25 C 0.05 1.92 5.47 86.54 0.47 2.40 16 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 27 H -0.02 -0.71 7.18 -2.39 -0.02 -0.72 16 28 H 0.03 1.49 7.40 -2.39 -0.02 1.47 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 2.67 7.99 -2.39 -0.02 2.66 16 31 H 0.11 2.49 7.04 -2.39 -0.02 2.47 16 32 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.45 0.49 9.06 -74.05 -0.67 -0.18 16 34 H 0.44 3.16 9.06 -74.06 -0.67 2.49 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.14 3.72 4.10 -96.96 -0.40 3.32 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 3.18 6.67 -2.39 -0.02 3.17 16 Total: -1.00 -73.51 319.37 -7.36 -80.87 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -0.63 Total: 4.84 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: 6.27 Total: 26.49 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -13.19 Total: -127.44 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -1.70 Total: -29.72 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Total: -73.51 -7.36 -80.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363626607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.116 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds