Wall clock time and date at job start Tue Mar 31 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28459 * 125.05512 * 2 1 4 4 C 1.32002 * 110.48408 * 180.27714 * 3 2 1 5 5 C 1.47629 * 126.27690 * 179.71417 * 4 3 2 6 6 O 1.21481 * 120.00104 * 180.02562 * 5 4 3 7 7 O 1.34728 * 120.00218 * 0.02562 * 5 4 3 8 8 C 1.40955 * 107.44449 * 359.71982 * 4 3 2 9 9 C 1.36760 * 125.06131 * 179.78975 * 2 1 3 10 10 C 1.47213 * 126.63854 * 0.02562 * 9 2 1 11 11 O 1.21617 * 119.99981 * 5.40139 * 10 9 2 12 12 N 1.34779 * 119.99668 * 185.40920 * 10 9 2 13 13 C 1.47020 * 125.64964 * 355.35287 * 12 10 9 14 14 C 1.54322 * 107.27038 * 178.90024 * 13 12 10 15 15 C 1.55151 * 102.94133 * 337.80878 * 14 13 12 16 16 O 1.42901 * 111.00735 * 277.42661 * 15 14 13 17 17 C 1.50704 * 111.00596 * 153.61695 * 15 14 13 18 18 H 1.07999 * 119.99707 * 3.17430 * 17 15 14 19 19 C 1.37875 * 120.00351 * 183.17807 * 17 15 14 20 20 N 1.31521 * 119.99744 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00277 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47078 * 89.99962 * 21 19 17 23 23 H 1.48493 * 109.47341 * 210.00291 * 21 19 17 24 24 H 1.48502 * 109.47318 * 330.00440 * 21 19 17 25 25 C 1.47429 * 125.64448 * 175.30860 * 12 10 9 26 26 H 1.09006 * 109.46608 * 274.81181 * 1 2 3 27 27 H 1.08992 * 109.47473 * 34.80867 * 1 2 3 28 28 H 1.08999 * 109.47251 * 154.81979 * 1 2 3 29 29 H 0.96695 * 117.00345 * 179.97438 * 7 5 4 30 30 H 1.08007 * 127.26293 * 180.02562 * 8 4 3 31 31 H 1.08995 * 109.88215 * 59.48414 * 13 12 10 32 32 H 1.09004 * 109.88448 * 298.31892 * 13 12 10 33 33 H 1.09001 * 110.72015 * 219.44225 * 14 13 12 34 34 H 1.09001 * 110.87182 * 96.24125 * 14 13 12 35 35 H 0.96692 * 114.00917 * 180.02562 * 16 15 14 36 36 H 0.96998 * 119.99395 * 180.02562 * 20 19 17 37 37 H 1.08999 * 110.36962 * 85.33193 * 25 12 10 38 38 H 1.09000 * 110.36629 * 323.00464 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2028 1.0516 0.0000 4 6 3.4803 0.7195 -0.0060 5 6 4.6251 1.6516 -0.0139 6 8 5.7604 1.2193 -0.0194 7 8 4.4109 2.9817 -0.0149 8 6 3.5510 -0.6883 -0.0036 9 6 2.2506 -1.1194 0.0041 10 6 1.7884 -2.5171 0.0087 11 8 0.6019 -2.7655 -0.0900 12 7 2.6800 -3.5213 0.1225 13 6 4.1421 -3.3698 0.1522 14 6 4.7455 -4.7801 0.3214 15 6 3.5757 -5.5860 0.9451 16 8 3.5118 -5.3855 2.3586 17 6 3.6933 -7.0518 0.6153 18 1 4.5456 -7.4135 0.0594 19 6 2.7127 -7.9311 1.0232 20 7 1.6744 -7.4905 1.6996 21 14 2.8580 -9.7478 0.6138 22 1 3.5877 -10.4441 1.7038 23 1 1.5009 -10.3338 0.4735 24 1 3.6014 -9.9100 -0.6616 25 6 2.3507 -4.9537 0.2387 26 1 -0.3633 0.0862 1.0241 27 1 -0.3634 0.8437 -0.5866 28 1 -0.3634 -0.9300 -0.4372 29 1 5.1916 3.5522 -0.0198 30 1 4.4423 -1.2983 -0.0066 31 1 4.4324 -2.7392 0.9925 32 1 4.4881 -2.9281 -0.7823 33 1 5.6004 -4.7552 0.9972 34 1 5.0308 -5.1987 -0.6438 35 1 2.7962 -5.8697 2.7927 36 1 0.9847 -8.1092 1.9869 37 1 2.2141 -5.3929 -0.7495 38 1 1.4531 -5.0888 0.8422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574462571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:15 Heat of formation + Delta-G solvation = -79.537520 kcal Electronic energy + Delta-G solvation = -25863.270773 eV Core-core repulsion = 21901.298698 eV Total energy + Delta-G solvation = -3961.972075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.84514 -40.01650 -39.38186 -37.32198 -36.23654 -34.65401 -33.47443 -32.26396 -31.52052 -30.11929 -28.02903 -27.90415 -25.50321 -24.42289 -23.43490 -21.72357 -21.04587 -19.74871 -19.60361 -17.99621 -17.35267 -17.14772 -16.66868 -16.31774 -16.12050 -15.55827 -15.33364 -15.02214 -14.63005 -14.25281 -14.13764 -13.55806 -13.31361 -13.16353 -12.96240 -12.85741 -12.56602 -12.17986 -11.73287 -11.68799 -11.58100 -11.24332 -11.09902 -11.01474 -10.79340 -10.68170 -10.54431 -10.27877 -9.78235 -9.46937 -9.45514 -9.30647 -8.77020 -8.51169 -7.99011 -6.36690 -4.46571 1.09167 1.34149 2.06689 2.81158 2.95176 3.16197 3.24484 3.26599 3.35385 3.44129 4.17298 4.20100 4.52859 4.91062 4.98592 5.03597 5.09440 5.23961 5.33475 5.43292 5.52333 5.54551 5.71412 5.91654 6.04065 6.07520 6.22366 6.37724 6.39828 6.63558 6.71445 6.77316 7.13113 7.23312 7.50434 7.66231 7.80231 7.89741 7.93077 8.36764 8.57887 9.22987 9.33365 10.70409 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.003656 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.557266 B = 7657.318199 C = 8526.146097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.241 5.241 3 N -0.215 5.215 4 C -0.023 4.023 5 C 0.579 3.421 6 O -0.504 6.504 7 O -0.503 6.503 8 C -0.137 4.137 9 C -0.019 4.019 10 C 0.593 3.407 11 O -0.549 6.549 12 N -0.586 5.586 13 C 0.091 3.909 14 C -0.119 4.119 15 C 0.249 3.751 16 O -0.583 6.583 17 C -0.539 4.539 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.097 3.903 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.414 0.586 30 H 0.185 0.815 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.385 0.615 36 H 0.271 0.729 37 H 0.067 0.933 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 14.650 -3.529 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.033 5.033 3 N -0.056 5.056 4 C -0.177 4.177 5 C 0.420 3.580 6 O -0.390 6.390 7 O -0.313 6.313 8 C -0.165 4.165 9 C -0.145 4.145 10 C 0.379 3.621 11 O -0.429 6.429 12 N -0.317 5.317 13 C -0.032 4.032 14 C -0.157 4.157 15 C 0.208 3.792 16 O -0.392 6.392 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.132 4.132 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.024 4.024 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.142 0.858 29 H 0.273 0.727 30 H 0.202 0.798 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.236 0.764 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.050 15.405 -3.624 15.825 hybrid contribution 0.439 -1.485 -0.054 1.550 sum 0.490 13.919 -3.678 14.405 Atomic orbital electron populations 1.22622 0.71427 1.07052 1.05237 1.45856 1.08461 1.01581 1.47401 1.73656 1.02818 1.13297 1.15841 1.20476 0.89769 0.92303 1.15201 1.19154 0.86376 0.80581 0.71860 1.90933 1.23057 1.78618 1.46397 1.84638 1.43370 1.17769 1.85539 1.22552 0.97432 0.92832 1.03635 1.21328 0.90574 0.90459 1.12134 1.16367 0.85317 0.81915 0.78453 1.90736 1.15585 1.84002 1.52541 1.48465 1.06601 1.08277 1.68338 1.22473 0.80240 1.00021 1.00424 1.22671 0.99212 0.92393 1.01397 1.19620 0.87748 0.92370 0.79450 1.86092 1.57945 1.73885 1.21275 1.21481 1.07784 0.91457 1.36962 0.91293 1.25091 0.94453 0.99840 0.93847 1.69644 1.10341 1.35931 1.37410 0.86374 0.77554 0.83828 0.79014 1.20335 1.20994 1.19632 1.23442 1.02908 0.74651 1.01378 0.89186 0.88588 0.85800 0.72732 0.79796 0.91064 0.91646 0.90274 0.90083 0.76423 0.91852 0.91494 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.99 59.85 0.66 1.49 16 2 N -0.24 -3.49 3.75 -64.20 -0.24 -3.73 16 3 N -0.21 -3.13 11.97 33.32 0.40 -2.73 16 4 C -0.02 -0.34 7.13 -82.93 -0.59 -0.93 16 5 C 0.58 7.54 8.34 34.56 0.29 7.83 16 6 O -0.50 -7.46 17.70 -19.25 -0.34 -7.80 16 7 O -0.50 -4.92 13.44 -40.57 -0.55 -5.47 16 8 C -0.14 -2.05 9.17 -39.00 -0.36 -2.41 16 9 C -0.02 -0.31 6.87 -82.47 -0.57 -0.88 16 10 C 0.59 11.20 7.82 -12.61 -0.10 11.10 16 11 O -0.55 -11.36 14.83 5.26 0.08 -11.28 16 12 N -0.59 -11.37 3.33 -171.87 -0.57 -11.94 16 13 C 0.09 1.52 5.00 -3.07 -0.02 1.50 16 14 C -0.12 -2.21 6.13 -24.90 -0.15 -2.37 16 15 C 0.25 5.69 0.89 -89.62 -0.08 5.61 16 16 O -0.58 -14.20 13.19 -35.23 -0.46 -14.67 16 17 C -0.54 -13.32 8.26 -34.44 -0.28 -13.61 16 18 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 19 C 0.07 1.77 5.27 -17.82 -0.09 1.67 16 20 N -0.89 -22.80 10.68 55.43 0.59 -22.20 16 21 Si 0.91 19.59 29.54 -169.99 -5.02 14.57 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 C 0.10 2.17 5.49 -2.53 -0.01 2.16 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.12 1.52 5.92 -51.93 -0.31 1.21 16 29 H 0.41 1.80 9.11 45.56 0.42 2.21 16 30 H 0.19 2.54 4.58 -52.48 -0.24 2.30 16 31 H 0.07 1.13 6.77 -51.93 -0.35 0.78 16 32 H 0.07 0.92 7.12 -51.93 -0.37 0.55 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.41 8.02 -51.93 -0.42 0.99 16 35 H 0.38 9.70 7.18 45.56 0.33 10.03 16 36 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.07 1.53 8.03 -51.93 -0.42 1.12 16 38 H 0.09 2.22 7.52 -51.93 -0.39 1.83 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -30.51 325.89 -5.07 -35.58 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -2.56 Total: 13.58 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -1.31 Total: 11.17 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.18 Total: -40.60 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.27 Total: -39.22 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.51 -5.07 -35.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574462571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.955 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds