Wall clock time and date at job start Tue Mar 31 2020 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35839 * 119.25077 * 2 1 4 4 C 1.38123 * 119.31795 * 179.71613 * 3 2 1 5 5 C 1.47075 * 120.95242 * 180.28162 * 4 3 2 6 6 O 1.21643 * 119.99820 * 171.42029 * 5 4 3 7 7 N 1.34772 * 119.99876 * 351.41745 * 5 4 3 8 8 C 1.47060 * 136.06114 * 3.01314 * 7 5 4 9 9 C 1.53238 * 88.08878 * 207.20551 * 8 7 5 10 10 O 1.42897 * 114.19858 * 87.72327 * 9 8 7 11 11 C 1.50698 * 114.33045 * 220.47249 * 9 8 7 12 12 H 1.07999 * 120.00074 * 93.75359 * 11 9 8 13 13 C 1.37875 * 119.99974 * 273.75777 * 11 9 8 14 14 N 1.31512 * 119.99969 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00356 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47072 * 59.99716 * 15 13 11 17 17 H 1.48499 * 109.47711 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47167 * 299.99752 * 15 13 11 19 19 C 1.47075 * 136.05341 * 183.38725 * 7 5 4 20 20 C 1.47172 * 118.09146 * 0.53605 * 4 3 2 21 21 O 1.21677 * 120.73862 * 179.76782 * 20 4 3 22 22 N 1.34978 * 118.52495 * 359.74256 * 20 4 3 23 23 C 1.46495 * 119.77866 * 179.97438 * 22 20 4 24 24 C 1.34230 * 119.24901 * 180.26486 * 2 1 3 25 25 O 1.21555 * 118.93884 * 359.97438 * 24 2 1 26 26 H 1.09002 * 109.47220 * 179.73350 * 1 2 3 27 27 H 1.08995 * 109.46913 * 59.73094 * 1 2 3 28 28 H 1.08997 * 109.47226 * 299.73193 * 1 2 3 29 29 H 1.08002 * 120.33528 * 359.97438 * 3 2 1 30 30 H 1.09003 * 113.46969 * 321.93429 * 8 7 5 31 31 H 1.08997 * 113.47053 * 92.37845 * 8 7 5 32 32 H 0.96702 * 113.99747 * 86.30850 * 10 9 8 33 33 H 0.97005 * 120.00132 * 180.02562 * 14 13 11 34 34 H 1.09002 * 113.46433 * 267.61463 * 19 7 5 35 35 H 1.08991 * 113.47122 * 38.00106 * 19 7 5 36 36 H 1.09003 * 109.47132 * 179.97438 * 23 22 20 37 37 H 1.08999 * 109.47228 * 299.97543 * 23 22 20 38 38 H 1.09001 * 109.47394 * 59.98029 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1288 1.1852 0.0000 4 6 3.5100 1.1868 0.0060 5 6 4.2649 2.4490 0.0124 6 8 5.4704 2.4358 0.1747 7 7 3.6211 3.6201 -0.1617 8 6 2.2231 4.0457 -0.3265 9 6 2.7383 5.2578 -1.1099 10 8 2.9066 5.0224 -2.5092 11 6 2.0180 6.5459 -0.8050 12 1 2.4073 7.2176 -0.0541 13 6 0.8621 6.8670 -1.4845 14 7 0.3883 6.0493 -2.3991 15 14 -0.0311 8.4633 -1.1061 16 1 0.8724 9.6113 -1.3727 17 1 -1.2364 8.5723 -1.9667 18 1 -0.4392 8.4757 0.3217 19 6 4.0081 5.0344 -0.2769 20 6 4.2045 -0.1107 0.0000 21 8 5.4201 -0.1654 0.0006 22 7 3.4632 -1.2386 -0.0057 23 6 4.1261 -2.5450 -0.0124 24 6 2.1209 -1.1712 -0.0054 25 8 1.4801 -2.2041 -0.0097 26 1 -0.3634 -1.0277 -0.0048 27 1 -0.3633 0.5180 -0.8875 28 1 -0.3633 0.5096 0.8923 29 1 1.5820 2.1166 -0.0004 30 1 1.6291 3.3605 -0.9313 31 1 1.7364 4.3105 0.6121 32 1 2.1049 5.1640 -3.0311 33 1 -0.4248 6.2753 -2.8774 34 1 4.0016 5.5651 0.6751 35 1 4.9295 5.1879 -0.8386 36 1 3.3741 -3.3341 -0.0159 37 1 4.7484 -2.6321 -0.9030 38 1 4.7491 -2.6409 0.8770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645748310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:27 Heat of formation + Delta-G solvation = -55.244653 kcal Electronic energy + Delta-G solvation = -26249.942640 eV Core-core repulsion = 22289.023983 eV Total energy + Delta-G solvation = -3960.918657 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.37419 -39.79380 -39.03174 -37.56481 -37.03788 -35.29427 -34.13040 -32.31086 -32.06860 -29.10150 -28.16733 -27.09506 -25.66042 -25.41943 -24.12871 -23.38631 -20.65997 -19.35775 -19.04838 -17.78592 -17.42000 -17.30557 -17.17949 -15.88736 -15.59726 -15.54677 -15.08877 -15.01774 -14.83283 -14.61123 -14.35927 -13.72298 -13.66859 -13.22473 -13.03957 -12.78974 -12.67026 -12.60402 -12.38260 -12.05616 -11.66631 -11.47360 -11.20564 -11.13483 -10.96457 -10.58563 -10.38801 -10.25914 -9.89621 -9.72617 -9.28347 -8.88292 -8.65528 -8.50037 -7.93614 -6.51980 -4.62526 0.67748 1.70508 1.78633 2.69635 3.01519 3.08640 3.15460 3.17778 3.41215 3.80193 4.08631 4.14215 4.41740 4.71698 4.82043 4.95841 4.98928 5.08888 5.20701 5.22349 5.35396 5.39976 5.46934 5.53867 5.68420 5.76924 6.04273 6.14640 6.24659 6.27131 6.50425 6.58112 6.97604 7.02276 7.34771 7.51799 7.68532 7.82871 8.37611 8.42779 8.73948 9.09639 9.38007 10.54515 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.004194 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.410579 B = 6674.157082 C = 7699.444305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.528 5.528 3 C 0.194 3.806 4 C -0.287 4.287 5 C 0.603 3.397 6 O -0.531 6.531 7 N -0.637 5.637 8 C 0.055 3.945 9 C 0.244 3.756 10 O -0.569 6.569 11 C -0.534 4.534 12 H 0.074 0.926 13 C 0.074 3.926 14 N -0.900 5.900 15 Si 0.909 3.091 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.113 3.887 20 C 0.560 3.440 21 O -0.469 6.469 22 N -0.557 5.557 23 C 0.080 3.920 24 C 0.694 3.306 25 O -0.545 6.545 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.199 0.801 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.394 0.606 33 H 0.275 0.725 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 -10.264 4.424 12.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.245 5.245 3 C 0.068 3.932 4 C -0.300 4.300 5 C 0.392 3.608 6 O -0.409 6.409 7 N -0.372 5.372 8 C -0.068 4.068 9 C 0.201 3.799 10 O -0.382 6.382 11 C -0.572 4.572 12 H 0.092 0.908 13 C -0.129 4.129 14 N -0.540 5.540 15 Si 0.736 3.264 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.009 4.009 20 C 0.351 3.649 21 O -0.338 6.338 22 N -0.302 5.302 23 C -0.061 4.061 24 C 0.398 3.602 25 O -0.419 6.419 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.215 0.785 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.250 0.750 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.354 -11.374 4.580 12.712 hybrid contribution -1.288 0.892 -0.015 1.567 sum -4.642 -10.483 4.565 12.340 Atomic orbital electron populations 1.22316 0.74117 1.06643 1.04364 1.44417 1.10045 1.04185 1.65861 1.23937 0.93257 0.90582 0.85464 1.21686 0.91655 0.94695 1.21927 1.16402 0.86179 0.80691 0.77492 1.90825 1.13444 1.86072 1.50540 1.49526 1.11311 1.05737 1.70597 1.24406 0.82791 0.98575 1.00997 1.19460 0.89464 0.90517 0.80414 1.86083 1.42239 1.91782 1.18118 1.21411 1.08457 1.04925 1.22441 0.90801 1.25062 0.96488 0.97373 0.93968 1.69242 1.23288 1.36876 1.24623 0.86361 0.78797 0.82715 0.78523 1.19769 1.20987 1.19832 1.23334 1.00601 0.77613 0.99386 1.18093 0.87380 0.82732 0.76665 1.90906 1.12037 1.85947 1.44933 1.46331 1.05650 1.10627 1.67591 1.21936 0.98454 0.81695 1.03990 1.15764 0.82085 0.84124 0.78248 1.90957 1.64996 1.31206 1.54754 0.87443 0.89315 0.89547 0.78473 0.91536 0.89350 0.74965 0.91445 0.89436 0.91212 0.88098 0.90185 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.53 59.85 0.63 1.14 16 2 N -0.53 -6.17 2.97 -128.52 -0.38 -6.55 16 3 C 0.19 2.57 9.62 -15.82 -0.15 2.42 16 4 C -0.29 -4.97 6.05 -102.73 -0.62 -5.60 16 5 C 0.60 12.64 7.99 -12.68 -0.10 12.54 16 6 O -0.53 -13.17 16.39 -14.65 -0.24 -13.41 16 7 N -0.64 -12.65 3.69 -186.78 -0.69 -13.34 16 8 C 0.06 1.01 5.93 -8.64 -0.05 0.96 16 9 C 0.24 5.33 1.57 -91.39 -0.14 5.19 16 10 O -0.57 -13.73 13.54 -35.23 -0.48 -14.20 16 11 C -0.53 -12.24 8.69 -34.44 -0.30 -12.54 16 12 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.07 1.68 5.39 -17.82 -0.10 1.58 16 14 N -0.90 -20.75 11.01 55.43 0.61 -20.14 16 15 Si 0.91 17.99 29.54 -169.99 -5.02 12.97 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 19 C 0.11 2.30 8.04 -8.50 -0.07 2.24 16 20 C 0.56 9.92 7.63 -12.54 -0.10 9.82 16 21 O -0.47 -9.85 15.68 -14.68 -0.23 -10.08 16 22 N -0.56 -8.05 2.96 -129.65 -0.38 -8.43 16 23 C 0.08 0.90 10.04 59.84 0.60 1.50 16 24 C 0.69 9.45 8.09 -87.74 -0.71 8.74 16 25 O -0.54 -7.82 14.66 5.32 0.08 -7.74 16 26 H 0.11 0.85 6.76 -51.93 -0.35 0.50 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.20 2.37 4.01 -52.49 -0.21 2.16 16 30 H 0.07 1.14 6.21 -51.93 -0.32 0.81 16 31 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 32 H 0.39 9.53 6.32 45.56 0.29 9.81 16 33 H 0.28 6.08 8.31 -40.82 -0.34 5.74 16 34 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.10 1.01 6.82 -51.93 -0.35 0.66 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -31.64 324.48 -6.40 -38.04 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -3.45 Total: 9.99 kcal Atomic # 6 Polarization: 29.11 SS G_CDS: -1.11 Total: 28.00 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.84 Total: -48.46 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.87 Total: -45.43 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.97 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.64 -6.40 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645748310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.204 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds