Wall clock time and date at job start Tue Mar 31 2020 04:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35839 * 119.25077 * 2 1 4 4 C 1.38123 * 119.31795 * 179.71613 * 3 2 1 5 5 C 1.47075 * 120.95242 * 180.28162 * 4 3 2 6 6 O 1.21643 * 119.99820 * 171.42029 * 5 4 3 7 7 N 1.34772 * 119.99876 * 351.41745 * 5 4 3 8 8 C 1.47060 * 136.06114 * 3.01314 * 7 5 4 9 9 C 1.53238 * 88.08878 * 207.20551 * 8 7 5 10 10 O 1.42897 * 114.19858 * 87.72327 * 9 8 7 11 11 C 1.50698 * 114.33045 * 220.47249 * 9 8 7 12 12 H 1.07999 * 120.00074 * 93.75359 * 11 9 8 13 13 C 1.37875 * 119.99974 * 273.75777 * 11 9 8 14 14 N 1.31512 * 119.99969 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00356 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47072 * 59.99716 * 15 13 11 17 17 H 1.48499 * 109.47711 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47167 * 299.99752 * 15 13 11 19 19 C 1.47075 * 136.05341 * 183.38725 * 7 5 4 20 20 C 1.47172 * 118.09146 * 0.53605 * 4 3 2 21 21 O 1.21677 * 120.73862 * 179.76782 * 20 4 3 22 22 N 1.34978 * 118.52495 * 359.74256 * 20 4 3 23 23 C 1.46495 * 119.77866 * 179.97438 * 22 20 4 24 24 C 1.34230 * 119.24901 * 180.26486 * 2 1 3 25 25 O 1.21555 * 118.93884 * 359.97438 * 24 2 1 26 26 H 1.09002 * 109.47220 * 179.73350 * 1 2 3 27 27 H 1.08995 * 109.46913 * 59.73094 * 1 2 3 28 28 H 1.08997 * 109.47226 * 299.73193 * 1 2 3 29 29 H 1.08002 * 120.33528 * 359.97438 * 3 2 1 30 30 H 1.09003 * 113.46969 * 321.93429 * 8 7 5 31 31 H 1.08997 * 113.47053 * 92.37845 * 8 7 5 32 32 H 0.96702 * 113.99747 * 86.30850 * 10 9 8 33 33 H 0.97005 * 120.00132 * 180.02562 * 14 13 11 34 34 H 1.09002 * 113.46433 * 267.61463 * 19 7 5 35 35 H 1.08991 * 113.47122 * 38.00106 * 19 7 5 36 36 H 1.09003 * 109.47132 * 179.97438 * 23 22 20 37 37 H 1.08999 * 109.47228 * 299.97543 * 23 22 20 38 38 H 1.09001 * 109.47394 * 59.98029 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1288 1.1852 0.0000 4 6 3.5100 1.1868 0.0060 5 6 4.2649 2.4490 0.0124 6 8 5.4704 2.4358 0.1747 7 7 3.6211 3.6201 -0.1617 8 6 2.2231 4.0457 -0.3265 9 6 2.7383 5.2578 -1.1099 10 8 2.9066 5.0224 -2.5092 11 6 2.0180 6.5459 -0.8050 12 1 2.4073 7.2176 -0.0541 13 6 0.8621 6.8670 -1.4845 14 7 0.3883 6.0493 -2.3991 15 14 -0.0311 8.4633 -1.1061 16 1 0.8724 9.6113 -1.3727 17 1 -1.2364 8.5723 -1.9667 18 1 -0.4392 8.4757 0.3217 19 6 4.0081 5.0344 -0.2769 20 6 4.2045 -0.1107 0.0000 21 8 5.4201 -0.1654 0.0006 22 7 3.4632 -1.2386 -0.0057 23 6 4.1261 -2.5450 -0.0124 24 6 2.1209 -1.1712 -0.0054 25 8 1.4801 -2.2041 -0.0097 26 1 -0.3634 -1.0277 -0.0048 27 1 -0.3633 0.5180 -0.8875 28 1 -0.3633 0.5096 0.8923 29 1 1.5820 2.1166 -0.0004 30 1 1.6291 3.3605 -0.9313 31 1 1.7364 4.3105 0.6121 32 1 2.1049 5.1640 -3.0311 33 1 -0.4248 6.2753 -2.8774 34 1 4.0016 5.5651 0.6751 35 1 4.9295 5.1879 -0.8386 36 1 3.3741 -3.3341 -0.0159 37 1 4.7484 -2.6321 -0.9030 38 1 4.7491 -2.6409 0.8770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645748310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:26 Heat of formation + Delta-G solvation = -78.179407 kcal Electronic energy + Delta-G solvation = -26250.937165 eV Core-core repulsion = 22289.023983 eV Total energy + Delta-G solvation = -3961.913183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.52221 -41.34429 -40.33072 -38.94683 -38.41834 -36.52112 -35.86692 -34.06681 -33.29946 -30.44865 -29.40208 -28.03533 -27.24545 -26.94872 -25.34756 -24.57445 -22.20066 -20.55804 -20.49188 -19.39493 -18.69986 -18.57431 -18.40185 -17.27895 -17.08892 -16.77401 -16.59954 -16.38420 -16.05935 -15.96918 -15.83812 -15.10650 -14.97269 -14.66293 -14.28365 -14.07637 -13.99688 -13.69325 -13.44850 -13.37944 -13.34333 -12.74116 -12.72588 -12.43049 -12.21614 -12.15585 -12.04399 -11.69081 -11.36666 -11.04173 -10.94766 -10.59993 -10.17566 -9.91494 -9.49760 -8.22480 -6.38166 -0.52421 0.56472 0.67718 1.50840 1.53840 1.58697 1.63540 1.68131 1.95906 2.39045 2.46405 2.95322 2.99650 3.29642 3.59841 3.82889 3.97454 4.06646 4.14484 4.26841 4.32061 4.33318 4.48076 4.53117 4.64289 4.65949 4.72536 4.79769 4.83130 4.89072 5.00119 5.12362 5.29297 5.79059 5.86943 5.96917 6.18867 6.61520 6.67375 6.83854 7.16302 7.35697 7.56506 8.83344 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.004194 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.410579 B = 6674.157082 C = 7699.444305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.517 5.517 3 C 0.249 3.751 4 C -0.332 4.332 5 C 0.600 3.400 6 O -0.584 6.584 7 N -0.637 5.637 8 C 0.070 3.930 9 C 0.222 3.778 10 O -0.587 6.587 11 C -0.551 4.551 12 H 0.074 0.926 13 C 0.041 3.959 14 N -0.913 5.913 15 Si 0.964 3.036 16 H -0.282 1.282 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.108 3.892 20 C 0.559 3.441 21 O -0.517 6.517 22 N -0.555 5.555 23 C 0.075 3.925 24 C 0.692 3.308 25 O -0.546 6.546 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.219 0.781 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.390 0.610 33 H 0.277 0.723 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 -10.591 5.157 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.232 5.232 3 C 0.119 3.881 4 C -0.345 4.345 5 C 0.391 3.609 6 O -0.466 6.466 7 N -0.370 5.370 8 C -0.051 4.051 9 C 0.181 3.819 10 O -0.401 6.401 11 C -0.589 4.589 12 H 0.092 0.908 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.790 3.210 16 H -0.207 1.207 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.015 4.015 20 C 0.353 3.647 21 O -0.391 6.391 22 N -0.299 5.299 23 C -0.065 4.065 24 C 0.395 3.605 25 O -0.421 6.421 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.235 0.765 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.246 0.754 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.468 -11.745 5.318 14.424 hybrid contribution -0.465 0.960 -0.281 1.103 sum -6.933 -10.785 5.037 13.775 Atomic orbital electron populations 1.22770 0.71061 1.07589 1.06923 1.44761 1.11694 1.03105 1.63592 1.23976 0.91683 0.91581 0.80820 1.21215 0.93050 0.93027 1.27230 1.16871 0.85855 0.81730 0.76428 1.90782 1.15775 1.86876 1.53152 1.49532 1.11996 1.05278 1.70220 1.24330 0.82117 0.96957 1.01729 1.19718 0.90527 0.92008 0.79662 1.86077 1.42389 1.91987 1.19612 1.21598 1.08813 1.05609 1.22866 0.90765 1.25613 0.96981 0.99551 0.93851 1.69283 1.23475 1.37768 1.24858 0.85508 0.77474 0.79408 0.78623 1.20745 1.20989 1.18951 1.23424 0.99339 0.78691 1.00000 1.18197 0.86975 0.83604 0.75930 1.90872 1.13886 1.86633 1.47674 1.46371 1.06089 1.10746 1.66728 1.22151 0.99019 0.80671 1.04630 1.15874 0.81708 0.84683 0.78207 1.90969 1.64866 1.31432 1.54791 0.87348 0.87326 0.86526 0.76468 0.89858 0.86679 0.75352 0.91269 0.87387 0.93301 0.86543 0.89814 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.53 127.77 1.35 1.94 16 2 N -0.52 -10.26 2.97 -679.09 -2.02 -12.28 16 3 C 0.25 5.87 9.62 84.05 0.81 6.68 16 4 C -0.33 -11.32 6.05 -18.64 -0.11 -11.44 16 5 C 0.60 25.44 7.99 86.56 0.69 26.13 16 6 O -0.58 -30.23 16.39 14.85 0.24 -29.99 16 7 N -0.64 -24.91 3.69 -863.56 -3.18 -28.10 16 8 C 0.07 2.41 5.93 83.09 0.49 2.90 16 9 C 0.22 9.54 1.57 -11.29 -0.02 9.52 16 10 O -0.59 -28.33 13.54 -148.98 -2.02 -30.35 16 11 C -0.55 -24.51 8.69 25.60 0.22 -24.29 16 12 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 13 C 0.04 1.80 5.39 84.65 0.46 2.26 16 14 N -0.91 -40.63 11.01 21.45 0.24 -40.40 16 15 Si 0.96 35.52 29.54 68.60 2.03 37.55 16 16 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.28 -10.40 7.11 99.48 0.71 -9.70 16 18 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 19 C 0.11 4.42 8.04 83.18 0.67 5.09 16 20 C 0.56 19.98 7.63 86.56 0.66 20.64 16 21 O -0.52 -22.63 15.68 14.74 0.23 -22.40 16 22 N -0.56 -15.47 2.96 -800.68 -2.37 -17.84 16 23 C 0.08 1.63 10.04 127.77 1.28 2.91 16 24 C 0.69 17.10 8.09 179.34 1.45 18.55 16 25 O -0.55 -14.08 14.66 -3.89 -0.06 -14.13 16 26 H 0.11 1.25 6.76 -2.39 -0.02 1.24 16 27 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.22 4.27 4.01 -2.91 -0.01 4.26 16 30 H 0.08 2.56 6.21 -2.39 -0.01 2.54 16 31 H 0.12 3.36 8.10 -2.39 -0.02 3.34 16 32 H 0.39 18.81 6.32 -74.06 -0.47 18.34 16 33 H 0.28 11.77 8.31 -92.70 -0.77 11.00 16 34 H 0.11 3.92 8.10 -2.39 -0.02 3.90 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.12 2.13 6.82 -2.39 -0.02 2.11 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -70.12 324.48 1.71 -68.42 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.66 Total: 28.63 kcal Atomic # 6 Polarization: 52.93 SS G_CDS: 7.95 Total: 60.88 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -7.34 Total: -98.61 kcal Atomic # 8 Polarization: -95.27 SS G_CDS: -1.60 Total: -96.87 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Total: -70.12 1.71 -68.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645748310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.762 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds