Wall clock time and date at job start Tue Mar 31 2020 04:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.50703 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.35318 * 126.66193 * 89.99801 * 4 3 2 6 6 C 1.42276 * 103.92057 * 179.97438 * 5 4 3 7 7 C 1.48326 * 126.94044 * 179.97438 * 6 5 4 8 8 O 1.21495 * 120.00272 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99954 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99976 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.64160 * 34.28634 * 10 9 7 12 12 C 1.54328 * 110.71706 * 271.15335 * 10 9 7 13 13 N 1.47016 * 107.27049 * 219.44538 * 12 10 9 14 14 C 1.36938 * 125.65005 * 178.97375 * 13 12 10 15 15 H 1.08005 * 119.99850 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00211 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00101 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47064 * 60.00270 * 18 16 14 20 20 H 1.48499 * 109.46927 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.46922 * 300.00014 * 18 16 14 22 22 C 1.47428 * 108.70622 * 358.93812 * 13 12 10 23 23 C 1.55127 * 104.94069 * 24.00316 * 22 13 12 24 24 H 1.09005 * 110.93345 * 81.21504 * 23 22 13 25 25 O 1.42899 * 111.16165 * 205.13505 * 23 22 13 26 26 N 1.30988 * 106.11836 * 0.02562 * 6 5 4 27 27 O 1.20903 * 111.44440 * 359.74088 * 26 6 5 28 28 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 1.08000 * 128.04249 * 359.94254 * 5 4 3 36 36 H 0.96996 * 120.00098 * 359.97438 * 9 7 6 37 37 H 1.09007 * 109.87769 * 338.86071 * 12 10 9 38 38 H 1.09000 * 109.88847 * 99.86703 * 12 10 9 39 39 H 0.96999 * 120.00300 * 180.02562 * 17 16 14 40 40 H 1.08996 * 110.36987 * 142.97245 * 22 13 12 41 41 H 1.09004 * 110.36575 * 265.29307 * 22 13 12 42 42 H 0.96702 * 113.99710 * 292.17005 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3554 1.4422 -1.0845 6 6 5.6673 1.4429 -0.5340 7 6 6.9481 1.4425 -1.2822 8 8 6.9419 1.4410 -2.4971 9 7 8.1187 1.4427 -0.6143 10 6 9.3837 1.4429 -1.3533 11 1 9.2902 2.0174 -2.2749 12 6 9.8406 -0.0003 -1.6536 13 7 11.2991 -0.0427 -1.4734 14 6 12.0902 -1.1501 -1.6256 15 1 11.6478 -2.0961 -1.9008 16 6 13.4607 -1.0567 -1.4261 17 7 13.9999 0.0960 -1.0903 18 14 14.5399 -2.5672 -1.6344 19 1 14.4135 -3.0782 -3.0230 20 1 15.9552 -2.2049 -1.3678 21 1 14.1092 -3.6188 -0.6787 22 6 11.7691 1.3045 -1.1027 23 6 10.5336 2.0000 -0.4732 24 1 10.4078 1.7028 0.5680 25 8 10.6260 3.4211 -0.5905 26 7 5.5157 1.4429 0.7671 27 8 4.3468 1.4474 1.0759 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 4.0710 1.4412 -2.1264 36 1 8.1237 1.4436 0.3557 37 1 9.3613 -0.6925 -0.9613 38 1 9.5836 -0.2647 -2.6793 39 1 14.9576 0.1613 -0.9513 40 1 12.5789 1.2373 -0.3762 41 1 12.0971 1.8490 -1.9882 42 1 11.3309 3.8147 -0.0582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077922921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:59 Heat of formation + Delta-G solvation = -1.429078 kcal Electronic energy + Delta-G solvation = -25118.164709 eV Core-core repulsion = 21295.412764 eV Total energy + Delta-G solvation = -3822.751944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.25790 -39.70716 -37.82506 -36.11344 -35.11188 -34.26173 -33.94977 -32.05068 -31.59082 -28.54226 -27.41021 -27.16946 -25.14096 -23.95603 -22.98329 -22.08448 -20.75815 -20.29795 -19.83894 -17.97652 -17.80547 -17.17916 -17.02826 -16.59096 -15.73029 -15.58050 -14.91414 -14.77859 -14.64044 -14.03432 -13.92903 -13.83133 -13.69645 -13.30640 -12.91317 -12.85084 -12.38575 -12.07813 -11.97586 -11.80859 -11.71316 -11.54190 -11.32196 -11.15446 -11.04693 -10.83260 -10.58589 -10.30266 -10.19338 -9.94590 -9.75734 -9.66940 -9.34278 -8.89868 -8.73528 -6.94748 -5.73910 -3.16656 0.98203 1.49850 2.69071 3.00706 3.19599 3.37804 3.41790 3.43199 3.85648 4.20561 4.38705 4.50323 4.50607 4.58271 4.75463 4.79960 5.00134 5.14828 5.19221 5.26278 5.28964 5.29729 5.39639 5.57875 5.59106 5.62133 5.68251 5.71192 5.81224 5.81268 6.03826 6.13987 6.36512 6.61997 6.83157 7.28926 7.45520 7.52882 7.69451 7.86451 8.07391 8.16702 8.24306 9.11815 9.72094 10.34309 11.30409 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.002658 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.775235 B =10530.240397 C =11200.496300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.038 4.038 4 C -0.035 4.035 5 C -0.179 4.179 6 C -0.019 4.019 7 C 0.596 3.404 8 O -0.522 6.522 9 N -0.697 5.697 10 C 0.140 3.860 11 H 0.104 0.896 12 C 0.130 3.870 13 N -0.599 5.599 14 C -0.224 4.224 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.919 3.081 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.131 3.869 23 C 0.067 3.933 24 H 0.063 0.937 25 O -0.565 6.565 26 N -0.332 5.332 27 O 0.122 5.878 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.180 0.820 36 H 0.405 0.595 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.254 0.746 40 H 0.114 0.886 41 H 0.027 0.973 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.703 4.452 5.286 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.076 4.076 4 C -0.098 4.098 5 C -0.202 4.202 6 C -0.178 4.178 7 C 0.380 3.620 8 O -0.396 6.396 9 N -0.347 5.347 10 C 0.036 3.964 11 H 0.122 0.878 12 C 0.003 3.997 13 N -0.327 5.327 14 C -0.352 4.352 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.573 5.573 18 Si 0.749 3.251 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.005 3.995 23 C 0.006 3.994 24 H 0.081 0.919 25 O -0.370 6.370 26 N -0.033 5.033 27 O 0.046 5.954 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.198 0.802 36 H 0.240 0.760 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.132 0.868 41 H 0.045 0.955 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -23.034 4.298 4.988 23.957 hybrid contribution 0.747 -0.683 -0.066 1.015 sum -22.287 3.615 4.922 23.109 Atomic orbital electron populations 1.21764 0.94808 1.02269 1.02134 1.21580 0.96387 0.94959 1.03329 1.20257 0.83197 0.99100 1.05035 1.24486 0.96193 1.03630 0.85512 1.22442 0.89673 1.06523 1.01538 1.23591 0.96933 1.07218 0.90069 1.16869 0.81567 0.77155 0.86454 1.90807 1.86619 1.49758 1.12395 1.45870 1.05199 1.73064 1.10584 1.22136 0.80445 0.97822 0.95998 0.87773 1.21621 0.86813 0.92388 0.98890 1.44272 1.00260 1.06640 1.81552 1.19060 0.88456 0.87597 1.40043 0.90209 1.24809 0.96518 0.97453 1.01810 1.69716 1.10872 1.22783 1.53940 0.86081 0.79443 0.81547 0.78011 1.21070 1.21488 1.21071 1.22595 0.93354 0.84040 0.99529 1.23678 0.97311 0.80617 0.97767 0.91921 1.86407 1.58084 1.20124 1.72378 1.74184 0.97151 1.16221 1.15705 1.84772 1.11112 1.66041 1.33462 0.92385 0.92228 0.92383 0.91154 0.91202 0.88234 0.89084 0.80220 0.76045 0.95138 0.94611 0.93493 0.86820 0.95540 0.77455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 3 C -0.04 -0.19 5.78 -27.88 -0.16 -0.35 16 4 C -0.04 -0.32 6.73 -35.35 -0.24 -0.56 16 5 C -0.18 -2.02 10.92 -39.07 -0.43 -2.44 16 6 C -0.02 -0.27 7.19 -82.53 -0.59 -0.86 16 7 C 0.60 10.32 7.85 -12.11 -0.10 10.22 16 8 O -0.52 -10.42 16.64 5.37 0.09 -10.33 16 9 N -0.70 -11.90 5.11 -52.82 -0.27 -12.17 16 10 C 0.14 2.77 3.00 -66.09 -0.20 2.57 16 11 H 0.10 2.23 7.62 -51.93 -0.40 1.83 16 12 C 0.13 2.90 7.00 -3.06 -0.02 2.88 16 13 N -0.60 -15.54 3.40 -169.93 -0.58 -16.12 16 14 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 15 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 17 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 18 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.13 3.14 5.63 -2.41 -0.01 3.13 16 23 C 0.07 1.29 4.06 -24.47 -0.10 1.19 16 24 H 0.06 1.14 8.00 -51.93 -0.42 0.73 16 25 O -0.57 -9.97 13.48 -35.23 -0.47 -10.44 16 26 N -0.33 -4.51 11.84 33.30 0.39 -4.12 16 27 O 0.12 1.37 11.18 17.26 0.19 1.56 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.40 6.22 8.30 -40.82 -0.34 5.88 16 37 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.11 2.98 5.87 -51.93 -0.31 2.67 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.38 5.06 9.12 45.56 0.42 5.48 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -33.08 356.77 -6.85 -39.93 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.23 Total: 7.32 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -1.89 Total: 7.98 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.11 Total: -58.33 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.19 Total: -19.22 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.08 -6.85 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077922921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.497 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds