Wall clock time and date at job start Tue Mar 31 2020 04:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47276 * 2 1 4 4 N 1.46505 * 109.47347 * 120.00725 * 2 1 3 5 5 C 1.46500 * 119.99521 * 299.99806 * 4 2 1 6 6 C 1.50701 * 109.46653 * 269.99730 * 5 4 2 7 7 H 1.07996 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99675 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00240 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99928 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47215 * 90.00092 * 10 8 6 12 12 H 1.48500 * 109.46809 * 210.00209 * 10 8 6 13 13 H 1.48497 * 109.46839 * 330.00158 * 10 8 6 14 14 C 1.34777 * 119.99970 * 119.99557 * 4 2 1 15 15 O 1.21283 * 119.99600 * 179.97438 * 14 4 2 16 16 C 1.50701 * 120.00287 * 359.97438 * 14 4 2 17 17 N 1.46498 * 109.46840 * 179.97438 * 16 14 4 18 18 C 1.36831 * 119.68793 * 90.00402 * 17 16 14 19 19 C 1.35028 * 119.68141 * 180.02562 * 18 17 16 20 20 C 1.41570 * 119.11275 * 0.28010 * 19 18 17 21 21 O 1.21784 * 120.30658 * 179.72201 * 20 19 18 22 22 N 1.34839 * 119.38870 * 359.40796 * 20 19 18 23 23 C 1.46494 * 119.87137 * 180.30098 * 22 20 19 24 24 C 1.34544 * 119.68795 * 270.01980 * 17 16 14 25 25 O 1.21586 * 119.53485 * 359.97438 * 24 17 16 26 26 H 1.09007 * 109.46381 * 299.99675 * 1 2 3 27 27 H 1.09001 * 109.46992 * 59.99396 * 1 2 3 28 28 H 1.08998 * 109.47513 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46381 * 240.00325 * 2 1 3 30 30 H 1.09006 * 109.46780 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47109 * 300.00276 * 3 2 1 32 32 H 1.08996 * 109.46778 * 60.00537 * 3 2 1 33 33 H 1.08994 * 109.47471 * 29.99731 * 5 4 2 34 34 H 1.08999 * 109.47069 * 150.00467 * 5 4 2 35 35 H 0.96994 * 120.00211 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.46739 * 59.99772 * 16 14 4 37 37 H 1.09002 * 109.46873 * 300.00207 * 16 14 4 38 38 H 1.07994 * 120.16126 * 359.97438 * 18 17 16 39 39 H 1.08002 * 120.43848 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47005 * 270.31830 * 23 22 20 41 41 H 1.09005 * 109.47424 * 30.31596 * 23 22 20 42 42 H 1.09000 * 109.47321 * 150.31830 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 1.6645 -0.1903 2.5267 6 6 2.7033 0.8015 2.9829 7 1 3.5429 1.0360 2.3453 8 6 2.5819 1.4097 4.2144 9 7 1.5598 1.1238 4.9910 10 14 3.8692 2.6397 4.7797 11 1 3.4754 4.0037 4.3444 12 1 3.9720 2.6031 6.2607 13 1 5.1834 2.2899 4.1834 14 6 2.7932 -1.7866 1.0723 15 8 3.1979 -2.3581 2.0625 16 6 3.1567 -2.3017 -0.2965 17 7 3.9995 -3.4925 -0.1621 18 6 3.4191 -4.7300 -0.0993 19 6 4.1960 -5.8273 0.0251 20 6 5.6014 -5.6720 0.0941 21 8 6.3224 -6.6465 0.2114 22 7 6.1348 -4.4357 0.0223 23 6 7.5882 -4.2633 0.0860 24 6 5.3369 -3.3588 -0.1014 25 8 5.8317 -2.2497 -0.1592 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 0.6906 0.2972 2.4844 34 1 1.6239 -1.0229 3.2291 35 1 1.4746 1.5514 5.8575 36 1 3.7015 -1.5310 -0.8419 37 1 2.2481 -2.5587 -0.8411 38 1 2.3447 -4.8285 -0.1481 39 1 3.7508 -6.8100 0.0762 40 1 7.8946 -4.1432 1.1251 41 1 8.0771 -5.1405 -0.3379 42 1 7.8743 -3.3780 -0.4818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:22 Heat of formation + Delta-G solvation = -58.670405 kcal Electronic energy + Delta-G solvation = -26640.467344 eV Core-core repulsion = 22815.233230 eV Total energy + Delta-G solvation = -3825.234114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33827 -39.66782 -38.70172 -37.22200 -36.06710 -35.16269 -32.93762 -32.03991 -30.99996 -28.98321 -27.98522 -26.90074 -26.47600 -23.90368 -23.62185 -22.68882 -21.49462 -19.28760 -18.79831 -17.74683 -17.28371 -17.02417 -16.52647 -16.50404 -15.78212 -15.14305 -15.01524 -14.74003 -14.45070 -14.02544 -13.79280 -13.64428 -13.58957 -13.46301 -13.12609 -12.90191 -12.41949 -12.36401 -12.00141 -11.92973 -11.71879 -11.61831 -11.27984 -11.01562 -10.94757 -10.85846 -10.63719 -10.49054 -10.28513 -10.09202 -9.78464 -9.62179 -9.32630 -8.53472 -8.45886 -7.82781 -6.08178 -4.11299 0.95301 1.79350 2.04061 2.92990 3.10122 3.28159 3.35790 3.40829 3.43085 3.74562 4.28829 4.42125 4.51648 4.72831 4.80070 5.05071 5.07446 5.16013 5.26929 5.31796 5.36692 5.40531 5.42326 5.49993 5.56584 5.66150 5.88122 5.97060 6.03776 6.15325 6.28128 6.33669 6.47830 6.88262 6.95879 7.17626 7.34447 7.42200 7.49823 7.87995 7.90102 8.18309 8.22665 8.75302 8.94672 9.53152 11.00090 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.004382 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.704334 B = 6387.863047 C = 7212.174937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 C -0.159 4.159 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.490 3.510 15 O -0.528 6.528 16 C 0.086 3.914 17 N -0.515 5.515 18 C 0.191 3.809 19 C -0.306 4.306 20 C 0.550 3.450 21 O -0.526 6.526 22 N -0.556 5.556 23 C 0.081 3.919 24 C 0.698 3.302 25 O -0.531 6.531 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.177 0.823 39 H 0.170 0.830 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -7.949 -15.968 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.318 5.318 5 C 0.129 3.871 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.274 3.726 15 O -0.405 6.405 16 C -0.039 4.039 17 N -0.233 5.233 18 C 0.067 3.933 19 C -0.333 4.333 20 C 0.347 3.653 21 O -0.403 6.403 22 N -0.300 5.300 23 C -0.060 4.060 24 C 0.401 3.599 25 O -0.403 6.403 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.194 0.806 39 H 0.188 0.812 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.104 -7.964 -15.217 17.176 hybrid contribution 0.541 0.806 0.545 1.113 sum 0.645 -7.159 -14.673 16.339 Atomic orbital electron populations 1.22166 0.95169 1.01874 1.02801 1.21066 0.94391 0.94568 0.87330 1.22149 1.01635 0.95344 1.02539 1.48347 1.48538 1.25714 1.09159 1.19290 0.96054 0.95061 0.76730 1.21420 1.08938 1.23399 1.02194 0.92279 1.24908 0.95735 0.97108 0.96284 1.69917 1.29571 1.43269 1.10699 0.86549 0.82116 0.81204 0.77932 1.20607 1.21143 1.19880 1.20330 0.80138 0.82064 0.90090 1.90737 1.52708 1.58209 1.38854 1.21961 0.95661 0.87460 0.98810 1.44348 1.05474 1.07681 1.65792 1.22324 1.00201 0.82830 0.87961 1.21811 0.91924 1.00304 1.19269 1.17361 0.89863 0.81822 0.76208 1.90849 1.63298 1.37300 1.48850 1.46310 1.10084 1.07147 1.66466 1.21873 0.75968 1.04202 1.03998 1.15770 0.80913 0.84805 0.78381 1.91032 1.72690 1.22981 1.53558 0.91089 0.92030 0.92851 0.91029 0.92503 0.93041 0.89880 0.94473 0.94032 0.92749 0.85564 0.86140 0.80635 0.81223 0.90846 0.89044 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.17 37.16 0.34 -1.64 16 2 C 0.13 1.83 3.17 -67.93 -0.22 1.62 16 3 C -0.16 -2.40 8.47 37.16 0.31 -2.08 16 4 N -0.59 -11.08 2.39 -167.46 -0.40 -11.48 16 5 C 0.25 6.02 4.60 -5.19 -0.02 5.99 16 6 C -0.52 -14.13 7.83 -34.44 -0.27 -14.39 16 7 H 0.06 1.64 7.63 -52.49 -0.40 1.24 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 10 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.49 9.19 7.74 -10.98 -0.09 9.10 16 15 O -0.53 -12.58 16.01 5.55 0.09 -12.49 16 16 C 0.09 1.09 4.13 -5.19 -0.02 1.07 16 17 N -0.51 -6.90 2.10 -122.83 -0.26 -7.16 16 18 C 0.19 1.95 10.38 -16.46 -0.17 1.78 16 19 C -0.31 -3.43 10.00 -39.45 -0.39 -3.83 16 20 C 0.55 8.06 7.44 -14.96 -0.11 7.94 16 21 O -0.53 -8.88 16.70 5.11 0.09 -8.79 16 22 N -0.56 -8.26 2.96 -131.50 -0.39 -8.65 16 23 C 0.08 1.01 10.12 59.84 0.61 1.62 16 24 C 0.70 11.22 8.11 -87.29 -0.71 10.51 16 25 O -0.53 -9.97 15.35 5.29 0.08 -9.89 16 26 H 0.07 1.04 6.66 -51.93 -0.35 0.70 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.75 5.77 -51.93 -0.30 0.45 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.51 6.92 -51.93 -0.36 1.16 16 33 H 0.04 0.91 6.43 -51.93 -0.33 0.57 16 34 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.13 1.57 7.02 -51.93 -0.36 1.20 16 37 H 0.12 0.90 7.68 -51.93 -0.40 0.50 16 38 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.01 7.43 -51.93 -0.39 0.62 16 42 H 0.09 1.06 7.39 -51.93 -0.38 0.68 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -37.07 351.76 -6.36 -43.44 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.75 Total: -1.15 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: -0.84 Total: 19.32 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.31 Total: -52.50 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: 0.26 Total: -31.18 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.07 -6.36 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.234 kcal (2) G-P(sol) polarization free energy of solvation -37.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds