Wall clock time and date at job start Tue Mar 31 2020 04:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47276 * 2 1 4 4 N 1.46505 * 109.47347 * 120.00725 * 2 1 3 5 5 C 1.46500 * 119.99521 * 299.99806 * 4 2 1 6 6 C 1.50701 * 109.46653 * 269.99730 * 5 4 2 7 7 H 1.07996 * 120.00225 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99675 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00240 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99928 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47215 * 90.00092 * 10 8 6 12 12 H 1.48500 * 109.46809 * 210.00209 * 10 8 6 13 13 H 1.48497 * 109.46839 * 330.00158 * 10 8 6 14 14 C 1.34777 * 119.99970 * 119.99557 * 4 2 1 15 15 O 1.21283 * 119.99600 * 179.97438 * 14 4 2 16 16 C 1.50701 * 120.00287 * 359.97438 * 14 4 2 17 17 N 1.46498 * 109.46840 * 179.97438 * 16 14 4 18 18 C 1.36831 * 119.68793 * 90.00402 * 17 16 14 19 19 C 1.35028 * 119.68141 * 180.02562 * 18 17 16 20 20 C 1.41570 * 119.11275 * 0.28010 * 19 18 17 21 21 O 1.21784 * 120.30658 * 179.72201 * 20 19 18 22 22 N 1.34839 * 119.38870 * 359.40796 * 20 19 18 23 23 C 1.46494 * 119.87137 * 180.30098 * 22 20 19 24 24 C 1.34544 * 119.68795 * 270.01980 * 17 16 14 25 25 O 1.21586 * 119.53485 * 359.97438 * 24 17 16 26 26 H 1.09007 * 109.46381 * 299.99675 * 1 2 3 27 27 H 1.09001 * 109.46992 * 59.99396 * 1 2 3 28 28 H 1.08998 * 109.47513 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46381 * 240.00325 * 2 1 3 30 30 H 1.09006 * 109.46780 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47109 * 300.00276 * 3 2 1 32 32 H 1.08996 * 109.46778 * 60.00537 * 3 2 1 33 33 H 1.08994 * 109.47471 * 29.99731 * 5 4 2 34 34 H 1.08999 * 109.47069 * 150.00467 * 5 4 2 35 35 H 0.96994 * 120.00211 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.46739 * 59.99772 * 16 14 4 37 37 H 1.09002 * 109.46873 * 300.00207 * 16 14 4 38 38 H 1.07994 * 120.16126 * 359.97438 * 18 17 16 39 39 H 1.08002 * 120.43848 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47005 * 270.31830 * 23 22 20 41 41 H 1.09005 * 109.47424 * 30.31596 * 23 22 20 42 42 H 1.09000 * 109.47321 * 150.31830 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 1.6645 -0.1903 2.5267 6 6 2.7033 0.8015 2.9829 7 1 3.5429 1.0360 2.3453 8 6 2.5819 1.4097 4.2144 9 7 1.5598 1.1238 4.9910 10 14 3.8692 2.6397 4.7797 11 1 3.4754 4.0037 4.3444 12 1 3.9720 2.6031 6.2607 13 1 5.1834 2.2899 4.1834 14 6 2.7932 -1.7866 1.0723 15 8 3.1979 -2.3581 2.0625 16 6 3.1567 -2.3017 -0.2965 17 7 3.9995 -3.4925 -0.1621 18 6 3.4191 -4.7300 -0.0993 19 6 4.1960 -5.8273 0.0251 20 6 5.6014 -5.6720 0.0941 21 8 6.3224 -6.6465 0.2114 22 7 6.1348 -4.4357 0.0223 23 6 7.5882 -4.2633 0.0860 24 6 5.3369 -3.3588 -0.1014 25 8 5.8317 -2.2497 -0.1592 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 0.6906 0.2972 2.4844 34 1 1.6239 -1.0229 3.2291 35 1 1.4746 1.5514 5.8575 36 1 3.7015 -1.5310 -0.8419 37 1 2.2481 -2.5587 -0.8411 38 1 2.3447 -4.8285 -0.1481 39 1 3.7508 -6.8100 0.0762 40 1 7.8946 -4.1432 1.1251 41 1 8.0771 -5.1405 -0.3379 42 1 7.8743 -3.3780 -0.4818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:22 Heat of formation + Delta-G solvation = -84.647988 kcal Electronic energy + Delta-G solvation = -26641.593817 eV Core-core repulsion = 22815.233230 eV Total energy + Delta-G solvation = -3826.360587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.43890 -41.02106 -39.96038 -38.35644 -37.48916 -36.35330 -34.95830 -33.08920 -32.42917 -30.39769 -29.17032 -28.16947 -27.81492 -25.17757 -24.82811 -24.25133 -22.75159 -20.37449 -20.09939 -18.88095 -18.62359 -18.52116 -18.12390 -17.73792 -17.06305 -16.63301 -16.33562 -16.13929 -15.83526 -15.41029 -14.84795 -14.81834 -14.77794 -14.59256 -14.32928 -14.24202 -13.91623 -13.38301 -13.34860 -13.24179 -13.11564 -12.95753 -12.79100 -12.71749 -12.54011 -12.18186 -12.11785 -12.08288 -11.65892 -11.52217 -11.44022 -10.96809 -10.75506 -10.61716 -9.59544 -9.45916 -8.22069 -6.32173 0.04298 0.70176 0.91714 1.31741 1.34920 1.44103 1.69140 1.90929 2.23618 2.36805 2.51697 3.08402 3.47134 3.52066 3.67793 3.90326 4.04459 4.14126 4.19134 4.28995 4.33091 4.34231 4.44970 4.56047 4.60147 4.68286 4.86781 4.94327 5.03591 5.09909 5.14131 5.17112 5.25688 5.37631 5.49723 5.60722 5.64696 5.85663 6.09794 6.10309 6.36217 6.69310 6.77281 6.80516 7.27658 7.42627 8.84817 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.004382 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.704334 B = 6387.863047 C = 7212.174937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 C -0.156 4.156 4 N -0.589 5.589 5 C 0.266 3.734 6 C -0.525 4.525 7 H 0.047 0.953 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.952 3.048 11 H -0.262 1.262 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.480 3.520 15 O -0.591 6.591 16 C 0.098 3.902 17 N -0.516 5.516 18 C 0.203 3.797 19 C -0.313 4.313 20 C 0.538 3.462 21 O -0.559 6.559 22 N -0.561 5.561 23 C 0.076 3.924 24 C 0.689 3.311 25 O -0.569 6.569 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.125 0.875 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.033 0.967 34 H -0.005 1.005 35 H 0.265 0.735 36 H 0.134 0.866 37 H 0.191 0.809 38 H 0.231 0.769 39 H 0.198 0.802 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 -8.185 -18.828 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 C -0.214 4.214 4 N -0.320 5.320 5 C 0.145 3.855 6 C -0.564 4.564 7 H 0.065 0.935 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.778 3.222 11 H -0.187 1.187 12 H -0.208 1.208 13 H -0.207 1.207 14 C 0.267 3.733 15 O -0.472 6.472 16 C -0.026 4.026 17 N -0.233 5.233 18 C 0.080 3.920 19 C -0.339 4.339 20 C 0.337 3.663 21 O -0.439 6.439 22 N -0.304 5.304 23 C -0.065 4.065 24 C 0.392 3.608 25 O -0.444 6.444 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.142 0.858 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.013 0.987 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.208 0.792 38 H 0.248 0.752 39 H 0.215 0.785 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.341 -8.199 -18.131 19.944 hybrid contribution 0.979 0.882 1.418 1.936 sum -0.362 -7.317 -16.713 18.248 Atomic orbital electron populations 1.22130 0.93466 1.03013 1.02782 1.21536 0.95780 0.93825 0.86806 1.22112 1.00354 0.96448 1.02527 1.48344 1.48747 1.26259 1.08670 1.18643 0.95162 0.92547 0.79173 1.21654 1.08963 1.23673 1.02130 0.93486 1.25675 0.97563 0.98957 0.96614 1.70015 1.31105 1.44473 1.11079 0.85650 0.79271 0.79930 0.77399 1.18690 1.20835 1.20696 1.21450 0.78595 0.81162 0.92107 1.90709 1.54761 1.60028 1.41704 1.22141 0.98228 0.87634 0.94632 1.44490 1.04565 1.09182 1.65088 1.23123 1.02409 0.80894 0.85609 1.22072 0.90076 1.02184 1.19531 1.18026 0.91298 0.81193 0.75740 1.90828 1.64278 1.37970 1.50793 1.46497 1.10781 1.07286 1.65886 1.21979 0.75542 1.05040 1.03905 1.16083 0.82048 0.84444 0.78193 1.90998 1.73692 1.24227 1.55473 0.94664 0.88424 0.91167 0.85778 0.94423 0.88939 0.93959 0.94953 0.98699 0.92624 0.84780 0.79244 0.75229 0.78541 0.91372 0.87836 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.17 71.98 0.66 -2.61 16 2 C 0.12 3.05 3.17 44.99 0.14 3.19 16 3 C -0.16 -4.46 8.47 71.98 0.61 -3.85 16 4 N -0.59 -21.81 2.39 -802.13 -1.91 -23.73 16 5 C 0.27 13.39 4.60 85.63 0.39 13.79 16 6 C -0.53 -29.48 7.83 25.60 0.20 -29.28 16 7 H 0.05 2.69 7.63 -2.91 -0.02 2.67 16 8 C 0.01 0.61 5.46 84.66 0.46 1.07 16 9 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 10 Si 0.95 45.64 29.54 68.60 2.03 47.67 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 14 C 0.48 17.33 7.74 87.66 0.68 18.01 16 15 O -0.59 -28.51 16.01 -3.04 -0.05 -28.56 16 16 C 0.10 2.07 4.13 85.63 0.35 2.42 16 17 N -0.52 -12.31 2.10 -660.90 -1.39 -13.69 16 18 C 0.20 3.29 10.38 83.17 0.86 4.15 16 19 C -0.31 -6.17 10.00 22.35 0.22 -5.94 16 20 C 0.54 15.33 7.44 85.05 0.63 15.96 16 21 O -0.56 -18.82 16.70 -4.62 -0.08 -18.90 16 22 N -0.56 -16.54 2.96 -806.45 -2.39 -18.93 16 23 C 0.08 1.95 10.12 127.77 1.29 3.24 16 24 C 0.69 21.53 8.11 179.18 1.45 22.98 16 25 O -0.57 -21.33 15.35 -3.99 -0.06 -21.39 16 26 H 0.03 0.99 6.66 -2.38 -0.02 0.98 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.12 1.83 5.77 -2.38 -0.01 1.82 16 30 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.54 6.92 -2.39 -0.02 1.52 16 33 H 0.03 1.65 6.43 -2.39 -0.02 1.63 16 34 H -0.01 -0.30 7.42 -2.39 -0.02 -0.32 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.13 2.77 7.02 -2.38 -0.02 2.75 16 37 H 0.19 1.38 7.68 -2.39 -0.02 1.36 16 38 H 0.23 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.20 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.10 2.33 7.43 -2.38 -0.02 2.32 16 42 H 0.10 2.30 7.39 -2.39 -0.02 2.29 16 Total: -1.00 -89.18 351.76 5.44 -83.74 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.03 Total: 5.65 kcal Atomic # 6 Polarization: 35.17 SS G_CDS: 7.97 Total: 43.14 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -5.40 Total: -111.35 kcal Atomic # 8 Polarization: -68.66 SS G_CDS: -0.19 Total: -68.85 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -89.18 5.44 -83.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.908 kcal (2) G-P(sol) polarization free energy of solvation -89.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds