Wall clock time and date at job start Tue Mar 31 2020 05:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36009 * 117.00360 * 2 1 4 4 C 1.35856 * 120.31126 * 0.02562 * 3 2 1 5 5 N 1.35435 * 120.77694 * 180.02562 * 4 3 2 6 6 H 0.96998 * 119.29687 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41038 * 359.96080 * 5 4 3 8 8 C 1.48072 * 119.71922 * 180.02562 * 7 5 4 9 9 O 1.21515 * 120.00384 * 180.02562 * 8 7 5 10 10 N 1.34775 * 120.00222 * 0.02562 * 8 7 5 11 11 C 1.46500 * 120.00430 * 179.72664 * 10 8 7 12 12 H 1.09000 * 109.46848 * 35.27329 * 11 10 8 13 13 C 1.52997 * 109.46854 * 275.27768 * 11 10 8 14 14 C 1.52997 * 109.47459 * 155.27659 * 11 10 8 15 15 N 1.46503 * 109.46948 * 305.00063 * 14 11 10 16 16 C 1.46507 * 119.99406 * 269.99931 * 15 14 11 17 17 C 1.36930 * 120.00569 * 89.99754 * 15 14 11 18 18 H 1.08009 * 119.99718 * 22.32092 * 17 15 14 19 19 C 1.38806 * 120.00607 * 202.31962 * 17 15 14 20 20 N 1.31620 * 119.99745 * 11.40387 * 19 17 15 21 21 Si 1.86803 * 120.00179 * 191.40273 * 19 17 15 22 22 H 1.48502 * 109.47005 * 60.00191 * 21 19 17 23 23 H 1.48507 * 109.46981 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47168 * 300.00109 * 21 19 17 25 25 C 1.36173 * 120.56428 * 0.29384 * 7 5 4 26 26 C 1.41569 * 120.31760 * 180.02562 * 3 2 1 27 27 O 1.22261 * 120.65357 * 0.02562 * 26 3 2 28 28 H 1.08993 * 109.47733 * 59.99864 * 1 2 3 29 29 H 1.09004 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47070 * 299.99533 * 1 2 3 31 31 H 1.08004 * 119.61174 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99516 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47035 * 299.99447 * 13 11 10 34 34 H 1.08999 * 109.47673 * 59.99610 * 13 11 10 35 35 H 1.09003 * 109.47454 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47585 * 64.99575 * 14 11 10 37 37 H 1.09003 * 109.47331 * 185.00317 * 14 11 10 38 38 H 1.09000 * 109.46881 * 94.23132 * 16 15 14 39 39 H 1.09008 * 109.46682 * 214.22429 * 16 15 14 40 40 H 1.08995 * 109.47781 * 334.22530 * 16 15 14 41 41 H 0.97000 * 120.00042 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.40789 * 179.72633 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3128 2.3552 0.0005 5 7 1.9180 3.5669 0.0000 6 1 1.3732 4.3695 0.0000 7 6 3.2773 3.6828 -0.0003 8 6 3.8994 5.0264 -0.0002 9 8 5.1097 5.1357 -0.0009 10 7 3.1235 6.1284 0.0005 11 6 3.7390 7.4578 0.0066 12 1 4.6550 7.4367 -0.5839 13 6 4.0689 7.8604 1.4453 14 6 2.7664 8.4730 -0.5968 15 7 2.3576 8.0246 -1.9303 16 6 3.1284 8.4312 -3.1079 17 6 1.2551 7.2257 -2.0760 18 1 0.4923 7.2133 -1.3114 19 6 1.1177 6.4317 -3.2062 20 7 2.1354 6.2712 -4.0253 21 14 -0.5115 5.5910 -3.5647 22 1 -1.5751 6.6164 -3.7152 23 1 -0.3980 4.8067 -4.8207 24 1 -0.8563 4.6811 -2.4430 25 6 4.0668 2.5733 -0.0060 26 6 3.4598 1.2937 -0.0005 27 8 4.1429 0.2797 -0.0015 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2344 2.2973 0.0014 32 1 2.1574 6.0412 0.0007 33 1 3.1530 7.8815 2.0358 34 1 4.7619 7.1372 1.8753 35 1 4.5273 8.8494 1.4499 36 1 1.8879 8.5591 0.0426 37 1 3.2560 9.4438 -0.6742 38 1 3.8621 7.6608 -3.3455 39 1 2.4549 8.5649 -3.9546 40 1 3.6416 9.3700 -2.9001 41 1 2.0395 5.7160 -4.8150 42 1 5.1426 2.6680 -0.0107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:49 Heat of formation + Delta-G solvation = -42.012898 kcal Electronic energy + Delta-G solvation = -26643.447336 eV Core-core repulsion = 22818.935545 eV Total energy + Delta-G solvation = -3824.511791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23080 -39.49211 -37.98428 -37.40981 -36.55926 -34.29400 -31.86222 -31.36856 -30.77861 -29.84471 -27.62942 -26.35434 -25.81385 -24.49759 -23.05970 -22.03662 -20.89688 -20.08108 -19.47434 -17.97550 -17.47886 -16.85380 -16.07134 -16.03483 -15.75247 -15.25178 -15.06211 -14.81969 -14.40827 -14.21865 -14.05695 -13.83570 -13.48975 -13.27038 -13.06441 -12.88309 -12.62921 -12.40674 -12.09988 -11.59683 -11.57430 -11.50899 -11.41621 -11.05265 -10.93456 -10.60679 -10.45259 -10.28589 -10.05326 -9.92042 -9.33406 -9.27695 -8.79805 -8.66813 -7.55388 -6.99787 -5.95507 -3.43386 0.90716 1.29066 2.72983 3.05492 3.11146 3.21340 3.23446 3.25322 3.36012 3.91720 4.22453 4.45325 4.70849 4.81774 4.98184 5.04018 5.11994 5.16144 5.29384 5.36659 5.45304 5.60138 5.68162 5.78829 5.91260 5.97833 6.03161 6.25015 6.28290 6.32755 6.58510 6.67444 6.68858 6.81401 6.89161 7.22540 7.22850 7.47252 7.64254 7.79826 8.14742 8.18462 8.39368 8.98009 9.62521 10.13533 11.07645 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.005803 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.612744 B = 4824.228901 C = 6338.759579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.290 6.290 3 C -0.041 4.041 4 C 0.036 3.964 5 N -0.555 5.555 6 H 0.423 0.577 7 C 0.141 3.859 8 C 0.558 3.442 9 O -0.522 6.522 10 N -0.678 5.678 11 C 0.117 3.883 12 H 0.083 0.917 13 C -0.161 4.161 14 C 0.141 3.859 15 N -0.598 5.598 16 C 0.162 3.838 17 C -0.268 4.268 18 H 0.065 0.935 19 C 0.009 3.991 20 N -0.891 5.891 21 Si 0.896 3.104 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.286 1.286 25 C -0.224 4.224 26 C 0.403 3.597 27 O -0.509 6.509 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.167 0.833 32 H 0.398 0.602 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.029 0.971 39 H 0.045 0.955 40 H -0.002 1.002 41 H 0.256 0.744 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 -0.912 9.920 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.201 6.201 3 C -0.092 4.092 4 C -0.092 4.092 5 N -0.167 5.167 6 H 0.261 0.739 7 C 0.028 3.972 8 C 0.341 3.659 9 O -0.398 6.398 10 N -0.328 5.328 11 C 0.010 3.990 12 H 0.101 0.899 13 C -0.220 4.220 14 C 0.013 3.987 15 N -0.321 5.321 16 C 0.018 3.982 17 C -0.398 4.398 18 H 0.082 0.918 19 C -0.191 4.191 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.213 1.213 25 C -0.251 4.251 26 C 0.294 3.706 27 O -0.394 6.394 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.184 0.816 32 H 0.234 0.766 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.016 0.984 41 H 0.067 0.933 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.984 -1.642 9.695 10.610 hybrid contribution -2.122 -0.043 -0.545 2.191 sum -6.106 -1.685 9.151 11.129 Atomic orbital electron populations 1.23109 0.79474 1.04211 1.00989 1.86249 1.20082 1.24464 1.89351 1.20392 0.94828 0.84487 1.09517 1.21653 0.98754 0.84320 1.04479 1.40793 1.05419 1.08617 1.61912 0.73860 1.20548 0.82661 0.96226 0.97807 1.17796 0.87078 0.83028 0.77995 1.90785 1.13059 1.85822 1.50119 1.45703 1.09890 1.05549 1.71649 1.22006 0.99078 0.82462 0.95470 0.89877 1.22169 1.01291 1.01496 0.97076 1.21211 0.95348 0.94350 0.87809 1.43870 1.30752 1.57649 0.99790 1.20822 0.94922 0.93548 0.88934 1.18989 0.96431 1.18310 1.06056 0.91774 1.25039 0.96841 0.98241 0.99000 1.70035 1.28403 1.40213 1.14730 0.86523 0.83927 0.79213 0.77798 1.20891 1.21461 1.21254 1.22375 1.02152 0.90351 1.10196 1.16753 0.85982 0.89805 0.78080 1.90819 1.65751 1.37600 1.45220 0.92741 0.88098 0.92867 0.81594 0.76552 0.92867 0.92680 0.91791 0.93221 0.92523 0.95252 0.93667 0.98392 0.93343 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.29 -4.41 10.33 -35.60 -0.37 -4.77 16 3 C -0.04 -0.65 6.71 -39.17 -0.26 -0.91 16 4 C 0.04 0.46 10.22 -16.82 -0.17 0.28 16 5 N -0.55 -7.43 5.26 -9.58 -0.05 -7.48 16 6 H 0.42 4.91 7.00 -40.82 -0.29 4.63 16 7 C 0.14 2.28 6.77 -82.53 -0.56 1.73 16 8 C 0.56 9.91 7.76 -12.23 -0.09 9.81 16 9 O -0.52 -10.74 15.94 5.35 0.09 -10.65 16 10 N -0.68 -10.98 4.48 -54.68 -0.24 -11.23 16 11 C 0.12 1.88 2.88 -67.93 -0.20 1.68 16 12 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 13 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 14 C 0.14 2.34 5.36 -4.04 -0.02 2.32 16 15 N -0.60 -12.69 2.82 -181.11 -0.51 -13.20 16 16 C 0.16 3.64 9.01 59.85 0.54 4.18 16 17 C -0.27 -6.00 8.02 -15.06 -0.12 -6.12 16 18 H 0.06 1.34 7.85 -52.48 -0.41 0.92 16 19 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 20 N -0.89 -23.42 10.59 55.49 0.59 -22.84 16 21 Si 0.90 18.88 29.57 -169.99 -5.03 13.85 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -5.50 7.11 56.52 0.40 -5.09 16 25 C -0.22 -3.94 9.53 -39.03 -0.37 -4.31 16 26 C 0.40 7.57 6.78 -37.02 -0.25 7.32 16 27 O -0.51 -11.25 17.71 -11.15 -0.20 -11.45 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 31 H 0.17 1.49 6.21 -52.48 -0.33 1.16 16 32 H 0.40 5.95 5.61 -40.82 -0.23 5.72 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.76 8.03 -51.93 -0.42 0.34 16 37 H 0.06 0.87 7.86 -51.93 -0.41 0.46 16 38 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 39 H 0.04 1.10 7.19 -51.92 -0.37 0.73 16 40 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 41 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 42 H 0.17 2.97 7.57 -52.49 -0.40 2.57 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -32.16 351.83 -6.33 -38.49 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.66 Total: 8.41 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -0.26 Total: 15.57 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.22 Total: -54.75 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.48 Total: -26.88 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.16 -6.33 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.521 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds