Wall clock time and date at job start Tue Mar 31 2020 05:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36012 * 117.00300 * 2 1 4 4 C 1.35848 * 120.31521 * 359.97438 * 3 2 1 5 5 N 1.35433 * 120.78205 * 179.97438 * 4 3 2 6 6 H 0.97005 * 119.29719 * 180.02562 * 5 4 3 7 7 C 1.36426 * 121.40945 * 359.97438 * 5 4 3 8 8 C 1.48076 * 119.71819 * 180.02562 * 7 5 4 9 9 O 1.21518 * 119.99717 * 179.97438 * 8 7 5 10 10 N 1.34772 * 119.99949 * 0.02562 * 8 7 5 11 11 C 1.46503 * 119.99502 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47586 * 324.99881 * 11 10 8 13 13 C 1.53003 * 109.46969 * 85.00384 * 11 10 8 14 14 C 1.53001 * 109.46992 * 204.99725 * 11 10 8 15 15 N 1.46500 * 109.46986 * 54.99941 * 14 11 10 16 16 C 1.46500 * 120.00277 * 269.99970 * 15 14 11 17 17 C 1.36939 * 119.99889 * 90.00033 * 15 14 11 18 18 H 1.08002 * 119.99689 * 20.37982 * 17 15 14 19 19 C 1.38808 * 120.00076 * 200.38224 * 17 15 14 20 20 N 1.31619 * 119.99915 * 15.00871 * 19 17 15 21 21 Si 1.86801 * 120.00292 * 195.00558 * 19 17 15 22 22 H 1.48496 * 109.46979 * 85.00063 * 21 19 17 23 23 H 1.48493 * 109.47495 * 205.00361 * 21 19 17 24 24 H 1.48507 * 109.46923 * 325.00053 * 21 19 17 25 25 C 1.36174 * 120.56287 * 0.02562 * 7 5 4 26 26 C 1.41579 * 120.31697 * 179.97438 * 3 2 1 27 27 O 1.22261 * 120.65140 * 0.03798 * 26 3 2 28 28 H 1.08999 * 109.47658 * 300.00773 * 1 2 3 29 29 H 1.09000 * 109.47091 * 60.00225 * 1 2 3 30 30 H 1.09007 * 109.47466 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.60815 * 0.25697 * 4 3 2 32 32 H 0.96994 * 120.00446 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.46701 * 299.99169 * 13 11 10 34 34 H 1.08997 * 109.47604 * 59.99846 * 13 11 10 35 35 H 1.09005 * 109.46581 * 179.97438 * 13 11 10 36 36 H 1.08991 * 109.47567 * 175.00205 * 14 11 10 37 37 H 1.09007 * 109.47339 * 295.00474 * 14 11 10 38 38 H 1.09005 * 109.46942 * 95.12736 * 16 15 14 39 39 H 1.08994 * 109.47484 * 215.12353 * 16 15 14 40 40 H 1.08996 * 109.47152 * 335.13529 * 16 15 14 41 41 H 0.97007 * 120.00110 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.40727 * 180.02562 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5669 0.0000 6 1 1.3732 4.3695 0.0000 7 6 3.2773 3.6828 0.0016 8 6 3.8995 5.0265 0.0027 9 8 5.1097 5.1357 0.0045 10 7 3.1234 6.1284 0.0026 11 6 3.7391 7.4578 0.0031 12 1 4.6554 7.4337 0.5929 13 6 4.0679 7.8681 -1.4337 14 6 2.7668 8.4698 0.6126 15 7 2.3589 8.0145 1.9439 16 6 1.1794 7.1589 2.0960 17 6 3.0801 8.3885 3.0462 18 1 3.7255 9.2533 3.0013 19 6 2.9817 7.6562 4.2213 20 7 2.4440 6.4550 4.2050 21 14 3.6124 8.3754 5.8258 22 1 2.5586 9.2259 6.4351 23 1 3.9607 7.2741 6.7590 24 1 4.8196 9.1982 5.5587 25 6 4.0668 2.5733 0.0022 26 6 3.4599 1.2937 0.0005 27 8 4.1429 0.2797 0.0003 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2345 2.2973 0.0033 32 1 2.1574 6.0413 0.0015 33 1 4.7606 7.1471 -1.8679 34 1 3.1516 7.8923 -2.0235 35 1 4.5256 8.8574 -1.4333 36 1 3.2564 9.4401 0.6947 37 1 1.8879 8.5593 -0.0259 38 1 1.4892 6.1141 2.1209 39 1 0.6671 7.4082 3.0251 40 1 0.5046 7.3176 1.2549 41 1 2.3755 5.9430 5.0262 42 1 5.1426 2.6680 0.0038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:52 Heat of formation + Delta-G solvation = -39.482299 kcal Electronic energy + Delta-G solvation = -26300.460220 eV Core-core repulsion = 22476.058165 eV Total energy + Delta-G solvation = -3824.402056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33916 -39.59864 -38.07407 -37.50831 -36.62159 -34.33331 -31.84733 -31.44996 -30.81253 -29.97804 -27.71111 -26.40494 -25.79212 -24.59154 -23.15472 -22.03590 -20.90903 -20.28844 -19.57010 -18.03222 -17.56458 -16.93521 -16.18430 -16.12165 -15.74574 -15.28644 -15.13807 -14.82544 -14.48994 -14.32727 -14.06810 -13.77574 -13.61361 -13.32073 -13.15051 -12.97401 -12.72051 -12.34433 -12.18285 -11.65873 -11.63297 -11.50314 -11.32585 -10.99821 -10.90058 -10.72118 -10.43096 -10.13183 -10.03338 -9.95144 -9.42302 -9.37414 -8.87464 -8.62165 -7.65021 -6.96314 -5.87811 -3.31029 0.80641 1.19797 2.59926 3.00275 3.13418 3.24715 3.32306 3.39562 3.40803 3.82244 4.33781 4.40242 4.60378 4.68799 4.88980 4.96494 5.06159 5.16779 5.29800 5.30446 5.48037 5.52895 5.63438 5.78425 5.81604 5.90177 6.00929 6.18846 6.28521 6.30657 6.36311 6.56351 6.64213 6.69298 6.81396 7.08204 7.14585 7.38403 7.62487 7.68263 8.09526 8.22193 8.26703 9.07412 9.70159 10.15585 11.18195 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.004308 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.384699 B = 6497.654692 C = 7268.335756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.289 6.289 3 C -0.038 4.038 4 C 0.034 3.966 5 N -0.558 5.558 6 H 0.420 0.580 7 C 0.137 3.863 8 C 0.559 3.441 9 O -0.512 6.512 10 N -0.690 5.690 11 C 0.115 3.885 12 H 0.092 0.908 13 C -0.161 4.161 14 C 0.142 3.858 15 N -0.597 5.597 16 C 0.159 3.841 17 C -0.261 4.261 18 H 0.071 0.929 19 C 0.007 3.993 20 N -0.905 5.905 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C -0.219 4.219 26 C 0.403 3.597 27 O -0.505 6.505 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.169 0.831 32 H 0.389 0.611 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.046 0.954 40 H -0.005 1.005 41 H 0.253 0.747 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 -3.149 -11.872 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.201 6.201 3 C -0.090 4.090 4 C -0.093 4.093 5 N -0.171 5.171 6 H 0.257 0.743 7 C 0.025 3.975 8 C 0.343 3.657 9 O -0.386 6.386 10 N -0.340 5.340 11 C 0.008 3.992 12 H 0.110 0.890 13 C -0.220 4.220 14 C 0.013 3.987 15 N -0.319 5.319 16 C 0.014 3.986 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.192 4.192 20 N -0.550 5.550 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.246 4.246 26 C 0.293 3.707 27 O -0.390 6.390 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.186 0.814 32 H 0.224 0.776 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.013 0.987 41 H 0.063 0.937 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.230 -3.920 -11.697 14.299 hybrid contribution -0.864 0.741 1.137 1.609 sum -8.094 -3.179 -10.560 13.679 Atomic orbital electron populations 1.23113 0.79383 1.04297 1.00954 1.86262 1.20163 1.24419 1.89259 1.20394 0.94809 0.84563 1.09185 1.21620 0.98707 0.84213 1.04803 1.40718 1.05276 1.08451 1.62661 0.74298 1.20535 0.82672 0.96166 0.98173 1.17784 0.87162 0.82901 0.77896 1.90812 1.12990 1.85679 1.49135 1.45768 1.09177 1.06209 1.72819 1.22062 0.99813 0.81776 0.95513 0.88966 1.22164 1.01185 1.01668 0.96946 1.21226 0.95000 0.95420 0.87018 1.43919 1.28560 1.58614 1.00830 1.20868 0.86602 0.94439 0.96654 1.19182 1.23083 1.07592 0.89137 0.91140 1.24930 1.00182 0.95172 0.98908 1.70022 1.48930 1.09402 1.26618 0.86270 0.78575 0.78080 0.83599 1.21471 1.21730 1.20477 1.22412 1.02256 0.90366 1.09582 1.16774 0.86059 0.89787 0.78089 1.90830 1.65774 1.37584 1.44762 0.92645 0.92890 0.88084 0.81440 0.77643 0.92695 0.93045 0.91611 0.91776 0.93850 0.95477 0.93507 0.98669 0.93701 0.81524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.29 -4.02 10.33 -35.60 -0.37 -4.39 16 3 C -0.04 -0.55 6.71 -39.16 -0.26 -0.81 16 4 C 0.03 0.36 10.22 -16.82 -0.17 0.19 16 5 N -0.56 -6.25 5.26 -9.58 -0.05 -6.30 16 6 H 0.42 3.63 7.00 -40.82 -0.29 3.34 16 7 C 0.14 2.05 6.77 -82.53 -0.56 1.49 16 8 C 0.56 9.50 7.77 -12.23 -0.09 9.41 16 9 O -0.51 -10.44 15.93 5.35 0.09 -10.35 16 10 N -0.69 -10.47 4.41 -54.68 -0.24 -10.71 16 11 C 0.12 1.85 2.88 -67.93 -0.20 1.66 16 12 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 13 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 14 C 0.14 2.37 5.33 -4.04 -0.02 2.35 16 15 N -0.60 -12.86 2.78 -181.12 -0.50 -13.37 16 16 C 0.16 3.22 7.60 59.85 0.45 3.68 16 17 C -0.26 -6.59 9.68 -15.06 -0.15 -6.73 16 18 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 19 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 20 N -0.91 -24.56 10.67 55.49 0.59 -23.97 16 21 Si 0.90 21.23 29.58 -169.99 -5.03 16.20 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.22 -3.66 9.53 -39.03 -0.37 -4.03 16 26 C 0.40 7.14 6.78 -37.02 -0.25 6.89 16 27 O -0.50 -10.76 17.71 -11.14 -0.20 -10.95 16 28 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.17 1.06 6.21 -52.49 -0.33 0.74 16 32 H 0.39 4.97 5.40 -40.82 -0.22 4.75 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.06 8.03 -51.93 -0.42 0.65 16 37 H 0.04 0.62 7.86 -51.93 -0.41 0.21 16 38 H 0.03 0.58 6.97 -51.93 -0.36 0.21 16 39 H 0.05 1.09 7.22 -51.93 -0.37 0.71 16 40 H -0.01 -0.08 7.83 -51.93 -0.41 -0.49 16 41 H 0.25 6.84 8.31 -40.82 -0.34 6.51 16 42 H 0.17 2.88 7.57 -52.49 -0.40 2.48 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -34.70 351.34 -6.41 -41.11 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.63 Total: 3.80 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -0.36 Total: 13.64 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.20 Total: -54.34 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.48 Total: -25.69 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.70 -6.41 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.626 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds