Wall clock time and date at job start Tue Mar 31 2020 05:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36012 * 117.00300 * 2 1 4 4 C 1.35848 * 120.31521 * 359.97438 * 3 2 1 5 5 N 1.35433 * 120.78205 * 179.97438 * 4 3 2 6 6 H 0.97005 * 119.29719 * 180.02562 * 5 4 3 7 7 C 1.36426 * 121.40945 * 359.97438 * 5 4 3 8 8 C 1.48076 * 119.71819 * 180.02562 * 7 5 4 9 9 O 1.21518 * 119.99717 * 179.97438 * 8 7 5 10 10 N 1.34772 * 119.99949 * 0.02562 * 8 7 5 11 11 C 1.46503 * 119.99502 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47586 * 324.99881 * 11 10 8 13 13 C 1.53003 * 109.46969 * 85.00384 * 11 10 8 14 14 C 1.53001 * 109.46992 * 204.99725 * 11 10 8 15 15 N 1.46500 * 109.46986 * 54.99941 * 14 11 10 16 16 C 1.46500 * 120.00277 * 269.99970 * 15 14 11 17 17 C 1.36939 * 119.99889 * 90.00033 * 15 14 11 18 18 H 1.08002 * 119.99689 * 20.37982 * 17 15 14 19 19 C 1.38808 * 120.00076 * 200.38224 * 17 15 14 20 20 N 1.31619 * 119.99915 * 15.00871 * 19 17 15 21 21 Si 1.86801 * 120.00292 * 195.00558 * 19 17 15 22 22 H 1.48496 * 109.46979 * 85.00063 * 21 19 17 23 23 H 1.48493 * 109.47495 * 205.00361 * 21 19 17 24 24 H 1.48507 * 109.46923 * 325.00053 * 21 19 17 25 25 C 1.36174 * 120.56287 * 0.02562 * 7 5 4 26 26 C 1.41579 * 120.31697 * 179.97438 * 3 2 1 27 27 O 1.22261 * 120.65140 * 0.03798 * 26 3 2 28 28 H 1.08999 * 109.47658 * 300.00773 * 1 2 3 29 29 H 1.09000 * 109.47091 * 60.00225 * 1 2 3 30 30 H 1.09007 * 109.47466 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.60815 * 0.25697 * 4 3 2 32 32 H 0.96994 * 120.00446 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.46701 * 299.99169 * 13 11 10 34 34 H 1.08997 * 109.47604 * 59.99846 * 13 11 10 35 35 H 1.09005 * 109.46581 * 179.97438 * 13 11 10 36 36 H 1.08991 * 109.47567 * 175.00205 * 14 11 10 37 37 H 1.09007 * 109.47339 * 295.00474 * 14 11 10 38 38 H 1.09005 * 109.46942 * 95.12736 * 16 15 14 39 39 H 1.08994 * 109.47484 * 215.12353 * 16 15 14 40 40 H 1.08996 * 109.47152 * 335.13529 * 16 15 14 41 41 H 0.97007 * 120.00110 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.40727 * 180.02562 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9180 3.5669 0.0000 6 1 1.3732 4.3695 0.0000 7 6 3.2773 3.6828 0.0016 8 6 3.8995 5.0265 0.0027 9 8 5.1097 5.1357 0.0045 10 7 3.1234 6.1284 0.0026 11 6 3.7391 7.4578 0.0031 12 1 4.6554 7.4337 0.5929 13 6 4.0679 7.8681 -1.4337 14 6 2.7668 8.4698 0.6126 15 7 2.3589 8.0145 1.9439 16 6 1.1794 7.1589 2.0960 17 6 3.0801 8.3885 3.0462 18 1 3.7255 9.2533 3.0013 19 6 2.9817 7.6562 4.2213 20 7 2.4440 6.4550 4.2050 21 14 3.6124 8.3754 5.8258 22 1 2.5586 9.2259 6.4351 23 1 3.9607 7.2741 6.7590 24 1 4.8196 9.1982 5.5587 25 6 4.0668 2.5733 0.0022 26 6 3.4599 1.2937 0.0005 27 8 4.1429 0.2797 0.0003 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2345 2.2973 0.0033 32 1 2.1574 6.0413 0.0015 33 1 4.7606 7.1471 -1.8679 34 1 3.1516 7.8923 -2.0235 35 1 4.5256 8.8574 -1.4333 36 1 3.2564 9.4401 0.6947 37 1 1.8879 8.5593 -0.0259 38 1 1.4892 6.1141 2.1209 39 1 0.6671 7.4082 3.0251 40 1 0.5046 7.3176 1.2549 41 1 2.3755 5.9430 5.0262 42 1 5.1426 2.6680 0.0038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754319337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:51 Heat of formation + Delta-G solvation = -64.806555 kcal Electronic energy + Delta-G solvation = -26301.558363 eV Core-core repulsion = 22476.058165 eV Total energy + Delta-G solvation = -3825.500198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.51889 -40.87142 -39.11613 -38.78788 -38.13189 -35.92230 -33.34528 -32.74268 -32.30440 -31.16220 -28.41013 -27.96952 -27.39288 -25.85662 -24.24433 -23.53372 -22.32897 -21.64065 -20.67974 -19.22576 -18.84329 -18.55131 -17.34455 -17.20203 -17.08550 -16.84650 -16.40954 -16.13162 -15.60983 -15.56391 -15.46049 -15.14308 -15.07004 -14.71012 -14.55203 -14.23201 -13.84179 -13.73490 -13.47327 -13.07907 -12.85669 -12.68204 -12.56171 -12.38771 -12.29654 -12.24878 -12.01855 -11.84917 -11.72463 -11.43343 -10.73356 -10.62864 -10.53664 -10.11994 -8.78796 -8.75032 -7.83558 -5.24360 -0.48901 0.12794 1.44316 1.47513 1.48803 1.52632 1.69017 1.90011 2.31559 2.51632 2.57619 3.31576 3.38970 3.53431 3.65629 3.72298 3.83660 4.17103 4.34540 4.40027 4.43254 4.48520 4.51259 4.61781 4.78633 4.82239 4.83922 4.89127 5.00128 5.03608 5.18126 5.36670 5.39089 5.42119 5.53004 5.66127 5.74484 5.80541 6.25654 6.33952 6.36520 6.89045 6.97016 7.19493 7.92590 8.28807 9.18469 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.004308 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.384699 B = 6497.654692 C = 7268.335756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.322 6.322 3 C -0.060 4.060 4 C 0.074 3.926 5 N -0.532 5.532 6 H 0.438 0.562 7 C 0.150 3.850 8 C 0.556 3.444 9 O -0.554 6.554 10 N -0.676 5.676 11 C 0.120 3.880 12 H 0.044 0.956 13 C -0.149 4.149 14 C 0.141 3.859 15 N -0.612 5.612 16 C 0.166 3.834 17 C -0.257 4.257 18 H 0.067 0.933 19 C -0.045 4.045 20 N -0.926 5.926 21 Si 0.950 3.050 22 H -0.284 1.284 23 H -0.304 1.304 24 H -0.277 1.277 25 C -0.240 4.240 26 C 0.381 3.619 27 O -0.570 6.570 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.228 0.772 32 H 0.405 0.595 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.015 0.985 39 H 0.010 0.990 40 H 0.048 0.952 41 H 0.243 0.757 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 -1.355 -13.513 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.235 6.235 3 C -0.110 4.110 4 C -0.055 4.055 5 N -0.144 5.144 6 H 0.280 0.720 7 C 0.034 3.966 8 C 0.340 3.660 9 O -0.431 6.431 10 N -0.327 5.327 11 C 0.013 3.987 12 H 0.063 0.937 13 C -0.208 4.208 14 C 0.014 3.986 15 N -0.334 5.334 16 C 0.021 3.979 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.573 5.573 21 Si 0.781 3.219 22 H -0.211 1.211 23 H -0.232 1.232 24 H -0.202 1.202 25 C -0.267 4.267 26 C 0.277 3.723 27 O -0.460 6.460 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.244 0.756 32 H 0.242 0.758 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.828 -2.039 -13.371 17.326 hybrid contribution 0.112 0.337 1.584 1.623 sum -10.717 -1.701 -11.787 16.021 Atomic orbital electron populations 1.23526 0.76245 1.06127 1.03035 1.86224 1.23416 1.24292 1.89546 1.20078 0.93494 0.86343 1.11131 1.22311 1.00706 0.82214 1.00220 1.40841 1.03972 1.09921 1.59659 0.72049 1.20134 0.84141 0.94473 0.97817 1.18016 0.86811 0.83799 0.77396 1.90797 1.14960 1.86310 1.51050 1.45670 1.09840 1.05531 1.71637 1.21899 0.97745 0.81878 0.97176 0.93739 1.22053 1.02487 1.01843 0.94375 1.21426 0.96704 0.95127 0.85299 1.44130 1.28777 1.58687 1.01819 1.20746 0.86632 0.93424 0.97074 1.19442 1.21990 1.06865 0.90442 0.91533 1.25455 1.01678 0.95810 1.01108 1.70139 1.50809 1.10166 1.26174 0.85536 0.78235 0.77041 0.81134 1.21099 1.23173 1.20188 1.22235 1.01833 0.91154 1.11488 1.17206 0.88068 0.89175 0.77833 1.90781 1.67251 1.38973 1.49039 0.90916 0.90057 0.86812 0.75600 0.75842 0.94036 0.89890 0.90248 0.91528 0.89582 0.96699 0.97121 0.93391 0.94797 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -8.58 10.33 -78.56 -0.81 -9.39 16 3 C -0.06 -1.67 6.71 22.54 0.15 -1.52 16 4 C 0.07 1.27 10.22 83.58 0.85 2.12 16 5 N -0.53 -10.03 5.26 -184.22 -0.97 -11.00 16 6 H 0.44 5.28 7.00 -92.70 -0.65 4.63 16 7 C 0.15 4.36 6.77 40.56 0.27 4.63 16 8 C 0.56 18.64 7.77 86.86 0.67 19.31 16 9 O -0.55 -23.38 15.93 -3.77 -0.06 -23.44 16 10 N -0.68 -18.88 4.41 -445.19 -1.96 -20.85 16 11 C 0.12 3.60 2.88 44.99 0.13 3.73 16 12 H 0.04 1.79 7.58 -2.39 -0.02 1.77 16 13 C -0.15 -3.30 9.48 71.98 0.68 -2.62 16 14 C 0.14 4.21 5.33 86.38 0.46 4.67 16 15 N -0.61 -24.87 2.78 -726.94 -2.02 -26.89 16 16 C 0.17 6.20 7.60 127.77 0.97 7.17 16 17 C -0.26 -12.74 9.68 84.03 0.81 -11.93 16 18 H 0.07 3.29 7.86 -2.91 -0.02 3.27 16 19 C -0.04 -2.35 5.06 84.86 0.43 -1.92 16 20 N -0.93 -50.39 10.67 21.65 0.23 -50.15 16 21 Si 0.95 43.89 29.58 68.60 2.03 45.92 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 C -0.24 -8.44 9.53 22.63 0.22 -8.23 16 26 C 0.38 14.23 6.78 23.93 0.16 14.39 16 27 O -0.57 -26.37 17.71 8.96 0.16 -26.21 16 28 H 0.07 0.64 7.66 -2.39 -0.02 0.63 16 29 H 0.08 0.54 7.66 -2.39 -0.02 0.52 16 30 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.23 1.27 6.21 -2.91 -0.02 1.25 16 32 H 0.40 8.57 5.40 -92.71 -0.50 8.07 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.07 1.99 8.03 -2.39 -0.02 1.97 16 37 H 0.09 1.90 7.86 -2.38 -0.02 1.88 16 38 H 0.01 0.59 6.97 -2.38 -0.02 0.57 16 39 H 0.01 0.45 7.22 -2.39 -0.02 0.43 16 40 H 0.05 1.27 7.83 -2.39 -0.02 1.26 16 41 H 0.24 13.32 8.31 -92.70 -0.77 12.54 16 42 H 0.15 5.60 7.57 -2.91 -0.02 5.58 16 Total: -1.00 -82.89 351.34 3.44 -79.45 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -0.09 Total: 11.57 kcal Atomic # 6 Polarization: 24.06 SS G_CDS: 6.93 Total: 30.99 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.73 Total: -108.89 kcal Atomic # 8 Polarization: -58.33 SS G_CDS: -0.71 Total: -59.04 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -82.89 3.44 -79.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.645 kcal (2) G-P(sol) polarization free energy of solvation -82.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds