Wall clock time and date at job start Tue Mar 31 2020 04:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99654 * 2 1 4 4 C 1.50707 * 109.47033 * 180.02562 * 3 2 1 5 5 N 1.30013 * 127.33535 * 270.15098 * 4 3 2 6 6 O 1.20655 * 112.30202 * 180.26911 * 5 4 3 7 7 C 1.33489 * 113.15635 * 359.73763 * 6 5 4 8 8 C 1.37363 * 106.34464 * 359.97438 * 7 6 5 9 9 C 1.47397 * 128.56601 * 179.97438 * 8 7 6 10 10 O 1.21608 * 119.99624 * 173.34735 * 9 8 7 11 11 N 1.34773 * 120.00135 * 353.34751 * 9 8 7 12 12 C 1.47423 * 125.64737 * 354.70724 * 11 9 8 13 13 C 1.54910 * 104.82973 * 204.09130 * 12 11 9 14 14 C 1.55155 * 101.58598 * 322.99271 * 13 12 11 15 15 H 1.08992 * 110.87051 * 277.06548 * 14 13 12 16 16 N 1.46498 * 110.71711 * 153.86278 * 14 13 12 17 17 C 1.46499 * 120.00153 * 305.02230 * 16 14 13 18 18 C 1.36937 * 119.99635 * 125.02926 * 16 14 13 19 19 H 1.07997 * 120.00323 * 334.46712 * 18 16 14 20 20 C 1.38819 * 120.00010 * 154.46780 * 18 16 14 21 21 N 1.31619 * 119.99852 * 3.39006 * 20 18 16 22 22 Si 1.86796 * 119.99724 * 183.38990 * 20 18 16 23 23 H 1.48503 * 109.46907 * 90.00586 * 22 20 18 24 24 H 1.48504 * 109.46822 * 209.99701 * 22 20 18 25 25 H 1.48494 * 109.47439 * 330.00125 * 22 20 18 26 26 C 1.47019 * 125.64520 * 174.67052 * 11 9 8 27 27 H 1.09004 * 109.47170 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47488 * 299.99609 * 1 2 3 29 29 H 1.08998 * 109.47703 * 60.00184 * 1 2 3 30 30 H 1.08991 * 109.47263 * 60.00120 * 3 2 1 31 31 H 1.09008 * 109.47396 * 299.99966 * 3 2 1 32 32 H 1.08001 * 126.82753 * 179.97438 * 7 6 5 33 33 H 1.09000 * 110.37005 * 322.93716 * 12 11 9 34 34 H 1.09006 * 110.36515 * 85.15027 * 12 11 9 35 35 H 1.09003 * 111.00043 * 204.91380 * 13 12 11 36 36 H 1.09001 * 111.00034 * 81.07229 * 13 12 11 37 37 H 1.08999 * 109.47262 * 264.49365 * 17 16 14 38 38 H 1.08996 * 109.47419 * 24.50369 * 17 16 14 39 39 H 1.09004 * 109.46813 * 144.49781 * 17 16 14 40 40 H 0.97002 * 119.99889 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.88502 * 59.56218 * 26 11 9 42 42 H 1.08998 * 109.88369 * 298.38883 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2988 1.1214 1.0328 6 8 5.4607 1.0355 0.7193 7 6 5.6484 1.0232 -0.6022 8 6 4.4013 1.1159 -1.1707 9 6 4.0429 1.1445 -2.6001 10 8 2.8743 1.1086 -2.9346 11 7 5.0102 1.2103 -3.5362 12 6 6.4518 1.3696 -3.2724 13 6 7.0251 1.9963 -4.5678 14 6 6.1856 1.2801 -5.6585 15 1 6.6060 0.3020 -5.8921 16 7 6.0933 2.1044 -6.8660 17 6 5.5890 3.4771 -6.7791 18 6 6.4784 1.5918 -8.0760 19 1 7.2037 0.7927 -8.1178 20 6 5.9364 2.0992 -9.2490 21 7 5.1033 3.1171 -9.2025 22 14 6.3895 1.3373 -10.8932 23 1 5.4321 0.2486 -11.2148 24 1 6.3318 2.3761 -11.9528 25 1 7.7645 0.7815 -10.8191 26 6 4.8024 1.1345 -4.9897 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6885 1.8463 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 6.5930 0.9541 -1.1213 33 1 6.6110 2.0369 -2.4253 34 1 6.9121 0.4000 -3.0822 35 1 8.0851 1.7667 -4.6769 36 1 6.8562 3.0730 -4.5889 37 1 4.5246 3.4887 -7.0138 38 1 5.7426 3.8574 -5.7692 39 1 6.1246 4.1067 -7.4897 40 1 4.7243 3.4715 -10.0221 41 1 4.1472 1.9433 -5.3133 42 1 4.3636 0.1717 -5.2517 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972710672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:03 Heat of formation + Delta-G solvation = 30.523731 kcal Electronic energy + Delta-G solvation = -25895.062424 eV Core-core repulsion = 22073.696057 eV Total energy + Delta-G solvation = -3821.366366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.14376 -39.81866 -38.10260 -37.41510 -34.94264 -34.14648 -32.57944 -31.45363 -29.86884 -28.61344 -27.94827 -26.12326 -25.94467 -25.14950 -22.98814 -22.62468 -21.30251 -20.03295 -19.29860 -17.99742 -17.57907 -17.12763 -16.99106 -16.44922 -16.01002 -15.90327 -15.60516 -15.08933 -14.86908 -14.14346 -13.95949 -13.49859 -13.29961 -12.77479 -12.70729 -12.65039 -12.54911 -12.29067 -11.92777 -11.74141 -11.64644 -11.51721 -10.92660 -10.89899 -10.63532 -10.43278 -10.37703 -10.35919 -10.09584 -9.96945 -9.93053 -9.84126 -9.78334 -8.59742 -8.44823 -6.86209 -5.82514 -3.31684 0.92192 1.44784 2.64861 3.12463 3.18868 3.33873 3.39945 3.41086 3.54741 3.93967 4.22799 4.40432 4.55823 4.68212 4.81142 4.98460 5.01929 5.12220 5.16892 5.22052 5.26567 5.31279 5.40504 5.51110 5.53540 5.59363 5.69248 5.80388 5.88843 6.24471 6.26141 6.41163 6.58004 6.77698 6.80207 6.87773 7.39590 7.61834 7.69489 7.78074 7.93976 8.22274 8.32035 9.15113 9.74792 10.24297 11.21519 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.003157 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.489860 B = 8866.466873 C = 9669.594090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.144 3.856 4 C 0.062 3.938 5 N -0.341 5.341 6 O 0.103 5.897 7 C -0.021 4.021 8 C -0.225 4.225 9 C 0.601 3.399 10 O -0.528 6.528 11 N -0.604 5.604 12 C 0.086 3.914 13 C -0.153 4.153 14 C 0.173 3.827 15 H 0.080 0.920 16 N -0.588 5.588 17 C 0.163 3.837 18 C -0.264 4.264 19 H 0.071 0.929 20 C 0.009 3.991 21 N -0.905 5.905 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.089 3.911 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.027 0.973 38 H -0.004 1.004 39 H 0.054 0.946 40 H 0.254 0.746 41 H 0.076 0.924 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 -2.767 18.233 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.067 3.933 4 C -0.100 4.100 5 N -0.046 5.046 6 O 0.040 5.960 7 C -0.102 4.102 8 C -0.233 4.233 9 C 0.388 3.612 10 O -0.405 6.405 11 N -0.338 5.338 12 C -0.037 4.037 13 C -0.193 4.193 14 C 0.063 3.937 15 H 0.099 0.901 16 N -0.308 5.308 17 C 0.019 3.981 18 C -0.393 4.393 19 H 0.089 0.911 20 C -0.190 4.190 21 N -0.549 5.549 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.035 4.035 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.014 0.986 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.682 -2.824 19.206 19.424 hybrid contribution -0.054 -0.164 -1.787 1.795 sum -0.736 -2.988 17.419 17.689 Atomic orbital electron populations 1.22765 0.80097 1.03087 1.00273 1.87910 1.20283 1.26253 1.95508 1.20538 0.84165 0.86203 1.02429 1.24346 0.97422 1.01496 0.86780 1.73643 0.89594 1.17748 1.23609 1.84578 1.21513 1.66456 1.23489 1.27043 1.00825 0.98863 0.83511 1.22384 0.92606 1.12550 0.95713 1.16436 0.84762 0.77587 0.82397 1.90802 1.17760 1.50459 1.81490 1.48343 1.06717 1.71031 1.07709 1.22669 0.81065 1.00211 0.99734 1.23374 1.00467 1.01736 0.93708 1.21367 0.90705 0.94878 0.86794 0.90145 1.43899 1.74850 1.09500 1.02594 1.20889 0.98524 0.84410 0.94281 1.19220 1.18895 1.18192 0.83016 0.91104 1.25202 0.97197 0.98071 0.98504 1.70085 1.33216 1.24848 1.26748 0.86228 0.78040 0.78611 0.83491 1.21251 1.21646 1.20439 1.23009 1.02002 1.02163 0.76374 0.89332 0.94036 0.93320 0.91437 0.89421 0.74977 0.90999 0.91020 0.90078 0.90141 0.95454 0.98570 0.92738 0.93524 0.90579 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.35 10.69 -35.23 -0.38 -5.72 16 3 C 0.14 1.87 6.16 36.01 0.22 2.09 16 4 C 0.06 0.87 7.21 -79.76 -0.58 0.30 16 5 N -0.34 -4.52 12.01 34.78 0.42 -4.10 16 6 O 0.10 1.14 11.06 18.66 0.21 1.35 16 7 C -0.02 -0.21 10.66 30.41 0.32 0.12 16 8 C -0.23 -3.07 6.36 -102.89 -0.65 -3.72 16 9 C 0.60 9.93 7.83 -12.53 -0.10 9.83 16 10 O -0.53 -10.55 16.14 5.27 0.09 -10.47 16 11 N -0.60 -9.30 3.33 -171.79 -0.57 -9.87 16 12 C 0.09 0.97 5.20 -2.53 -0.01 0.96 16 13 C -0.15 -2.15 6.59 -24.58 -0.16 -2.31 16 14 C 0.17 3.18 3.45 -66.09 -0.23 2.95 16 15 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 16 N -0.59 -13.72 2.94 -171.39 -0.50 -14.23 16 17 C 0.16 3.84 7.69 59.85 0.46 4.30 16 18 C -0.26 -6.84 9.61 -15.06 -0.14 -6.98 16 19 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 20 C 0.01 0.24 5.37 -17.43 -0.09 0.15 16 21 N -0.90 -25.46 10.15 55.49 0.56 -24.90 16 22 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.09 1.63 6.51 -3.06 -0.02 1.61 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.18 7.25 -51.92 -0.38 0.80 16 32 H 0.23 1.36 5.19 -52.49 -0.27 1.09 16 33 H 0.07 0.62 5.97 -51.93 -0.31 0.31 16 34 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.24 6.14 -51.93 -0.32 0.92 16 37 H 0.03 0.71 7.36 -51.93 -0.38 0.33 16 38 H 0.00 -0.08 6.13 -51.93 -0.32 -0.40 16 39 H 0.05 1.40 7.07 -51.93 -0.37 1.03 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.08 1.63 7.07 -51.93 -0.37 1.26 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -32.55 343.80 -5.51 -38.06 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.61 Total: -2.07 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 0.13 Total: 10.74 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.09 Total: -53.10 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.09 Total: -14.84 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.55 -5.51 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972710672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.585 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds