Wall clock time and date at job start Tue Mar 31 2020 04:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42910 * 113.99791 * 2 1 4 4 C 1.50693 * 109.47152 * 179.97438 * 3 2 1 5 5 N 1.30011 * 127.33640 * 269.99542 * 4 3 2 6 6 O 1.20664 * 112.30205 * 179.97438 * 5 4 3 7 7 C 1.33489 * 113.15669 * 359.76018 * 6 5 4 8 8 C 1.37359 * 106.34197 * 0.38541 * 7 6 5 9 9 C 1.47400 * 128.56544 * 179.91150 * 8 7 6 10 10 O 1.21605 * 120.00227 * 185.56494 * 9 8 7 11 11 N 1.34776 * 119.99620 * 5.56264 * 9 8 7 12 12 C 1.47429 * 125.64397 * 175.19050 * 11 9 8 13 13 C 1.54911 * 104.83238 * 155.90753 * 12 11 9 14 14 C 1.55158 * 101.61619 * 36.98580 * 13 12 11 15 15 H 1.09007 * 110.71917 * 82.88255 * 14 13 12 16 16 N 1.46498 * 110.71872 * 206.15489 * 14 13 12 17 17 C 1.46489 * 120.00225 * 60.00124 * 16 14 13 18 18 C 1.36942 * 119.99838 * 240.00260 * 16 14 13 19 19 H 1.08004 * 120.00122 * 23.88902 * 18 16 14 20 20 C 1.38810 * 119.99924 * 203.89144 * 18 16 14 21 21 N 1.31621 * 119.99914 * 10.27514 * 20 18 16 22 22 Si 1.86798 * 119.99918 * 190.27132 * 20 18 16 23 23 H 1.48495 * 109.47525 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46839 * 120.00453 * 22 20 18 25 25 H 1.48502 * 109.47274 * 239.99972 * 22 20 18 26 26 C 1.47013 * 125.65378 * 355.22734 * 11 9 8 27 27 H 1.08999 * 109.46983 * 60.00728 * 1 2 3 28 28 H 1.09003 * 109.46439 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47129 * 299.99811 * 1 2 3 30 30 H 1.09000 * 109.46917 * 59.99684 * 3 2 1 31 31 H 1.09002 * 109.46652 * 300.00067 * 3 2 1 32 32 H 1.08000 * 126.82811 * 180.29785 * 7 6 5 33 33 H 1.08995 * 110.36851 * 37.06300 * 12 11 9 34 34 H 1.09006 * 110.45516 * 274.79286 * 12 11 9 35 35 H 1.09000 * 111.00286 * 155.08147 * 13 12 11 36 36 H 1.08994 * 111.00183 * 278.89601 * 13 12 11 37 37 H 1.09000 * 109.47399 * 94.80724 * 17 16 14 38 38 H 1.09003 * 109.47249 * 214.80335 * 17 16 14 39 39 H 1.09001 * 109.47064 * 334.80449 * 17 16 14 40 40 H 0.97003 * 120.00031 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.88624 * 300.44086 * 26 11 9 42 42 H 1.09006 * 109.88159 * 61.60691 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2981 1.1247 1.0347 6 8 5.4599 1.0321 0.7222 7 6 5.6480 1.0114 -0.5992 8 6 4.4023 1.1154 -1.1686 9 6 4.0448 1.1424 -2.5984 10 8 2.8929 1.3415 -2.9335 11 7 4.9947 0.9466 -3.5342 12 6 4.7623 0.8484 -4.9868 13 6 6.1128 1.2475 -5.6323 14 6 7.1297 0.6199 -4.6426 15 1 7.2827 -0.4363 -4.8649 16 7 8.4009 1.3473 -4.6749 17 6 8.4387 2.7715 -4.3345 18 6 9.5539 0.6958 -5.0235 19 1 9.5075 -0.1979 -5.6282 20 6 10.7822 1.1839 -4.5996 21 7 10.8341 2.1460 -3.7028 22 14 12.3616 0.4754 -5.3017 23 1 12.0330 -0.5871 -6.2858 24 1 13.1308 1.5525 -5.9751 25 1 13.1766 -0.1020 -4.2028 26 6 6.4339 0.7947 -3.2757 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 6.5920 0.9305 -1.1176 33 1 3.9767 1.5391 -5.2928 34 1 4.4973 -0.1725 -5.2620 35 1 6.2148 0.8115 -6.6261 36 1 6.2225 2.3312 -5.6702 37 1 8.6950 2.8867 -3.2813 38 1 9.1884 3.2719 -4.9475 39 1 7.4611 3.2158 -4.5212 40 1 11.6925 2.4868 -3.4063 41 1 6.8170 1.6849 -2.7768 42 1 6.6084 -0.0845 -2.6554 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972710673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:06 Heat of formation + Delta-G solvation = 25.734375 kcal Electronic energy + Delta-G solvation = -26126.198347 eV Core-core repulsion = 22304.624298 eV Total energy + Delta-G solvation = -3821.574048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.97665 -39.83288 -38.09470 -37.45650 -34.86233 -34.04762 -32.54891 -31.50897 -29.88123 -28.41342 -27.99794 -26.18102 -25.95923 -25.11470 -23.29874 -22.10153 -21.37374 -19.84137 -19.48656 -17.83129 -17.42669 -17.18035 -16.91399 -16.42211 -16.05317 -15.86046 -15.60617 -15.00998 -14.89467 -14.16256 -13.88754 -13.49361 -13.22655 -12.88589 -12.78557 -12.60391 -12.51574 -12.29726 -11.90266 -11.72471 -11.58818 -11.47943 -10.99399 -10.91578 -10.68782 -10.59205 -10.38789 -10.25828 -10.15231 -9.98331 -9.93085 -9.77309 -9.74193 -8.69382 -8.48524 -6.93934 -5.87955 -3.37709 1.07585 1.55934 2.75564 3.17070 3.27247 3.29729 3.37862 3.38943 3.60365 4.05260 4.30636 4.36549 4.64341 4.83222 5.00407 5.02225 5.12416 5.15469 5.22452 5.24651 5.28989 5.40170 5.47713 5.49874 5.55211 5.64291 5.71155 5.78977 5.90204 6.03666 6.21657 6.40253 6.42720 6.64697 6.73543 6.88314 7.23108 7.57141 7.59539 7.68065 8.07733 8.20059 8.24163 9.07078 9.68137 10.16660 11.16060 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.022182 B = 0.003467 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.959644 B = 8073.803214 C = 8904.576778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.144 3.856 4 C 0.061 3.939 5 N -0.342 5.342 6 O 0.103 5.897 7 C -0.005 4.005 8 C -0.237 4.237 9 C 0.609 3.391 10 O -0.541 6.541 11 N -0.605 5.605 12 C 0.112 3.888 13 C -0.154 4.154 14 C 0.175 3.825 15 H 0.083 0.917 16 N -0.586 5.586 17 C 0.158 3.842 18 C -0.263 4.263 19 H 0.071 0.929 20 C 0.007 3.993 21 N -0.904 5.904 22 Si 0.907 3.093 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.063 3.937 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.238 0.762 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.046 0.954 39 H 0.001 0.999 40 H 0.254 0.746 41 H 0.078 0.922 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 -1.536 4.057 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.067 3.933 4 C -0.102 4.102 5 N -0.048 5.048 6 O 0.041 5.959 7 C -0.086 4.086 8 C -0.244 4.244 9 C 0.398 3.602 10 O -0.420 6.420 11 N -0.338 5.338 12 C -0.011 4.011 13 C -0.194 4.194 14 C 0.065 3.935 15 H 0.101 0.899 16 N -0.306 5.306 17 C 0.014 3.986 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.737 3.263 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.216 1.216 26 C -0.062 4.062 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.254 0.746 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.861 -1.470 5.313 15.851 hybrid contribution 0.870 -0.086 -1.048 1.365 sum -13.991 -1.556 4.265 14.709 Atomic orbital electron populations 1.22755 0.80242 1.02997 1.00221 1.87916 1.20166 1.26515 1.95521 1.20558 0.84286 0.85977 1.02505 1.24287 0.97237 1.01772 0.86867 1.73647 0.89689 1.17764 1.23700 1.84601 1.21375 1.66279 1.23667 1.27334 1.01243 0.96733 0.83279 1.22231 0.92671 1.14051 0.95477 1.16380 0.84252 0.76991 0.82614 1.90743 1.18948 1.50575 1.81716 1.48289 1.07871 1.70302 1.07321 1.22240 0.98887 1.01238 0.78695 1.23409 0.93600 1.02470 0.99940 1.21347 0.86109 0.96541 0.89540 0.89930 1.43920 1.02157 1.05513 1.79022 1.20833 0.95028 0.82973 0.99796 1.19258 0.83670 1.09990 1.26289 0.91109 1.25087 0.98220 0.98773 0.97092 1.70049 1.24234 1.29537 1.31021 0.86152 0.83381 0.78415 0.78361 1.20232 1.21563 1.21583 1.23314 0.78795 1.01246 1.02828 0.93477 0.89390 0.93999 0.91459 0.89253 0.74582 0.90759 0.91468 0.90164 0.90507 0.94949 0.93543 0.98062 0.93561 0.90370 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.36 10.69 -35.23 -0.38 -5.73 16 3 C 0.14 1.91 6.24 36.00 0.22 2.14 16 4 C 0.06 0.93 7.21 -79.77 -0.58 0.36 16 5 N -0.34 -5.20 12.01 34.78 0.42 -4.78 16 6 O 0.10 1.45 11.06 18.66 0.21 1.66 16 7 C 0.00 -0.06 10.84 30.41 0.33 0.27 16 8 C -0.24 -3.62 6.40 -102.89 -0.66 -4.28 16 9 C 0.61 10.10 7.84 -12.53 -0.10 10.00 16 10 O -0.54 -10.03 15.90 5.27 0.08 -9.94 16 11 N -0.60 -9.31 3.33 -171.77 -0.57 -9.88 16 12 C 0.11 1.57 6.93 -2.53 -0.02 1.55 16 13 C -0.15 -2.30 6.61 -24.58 -0.16 -2.47 16 14 C 0.18 3.05 3.43 -66.07 -0.23 2.82 16 15 H 0.08 1.42 7.95 -51.93 -0.41 1.01 16 16 N -0.59 -12.82 2.94 -171.36 -0.50 -13.33 16 17 C 0.16 3.47 7.50 59.84 0.45 3.92 16 18 C -0.26 -6.49 9.61 -15.06 -0.14 -6.64 16 19 H 0.07 1.72 7.85 -52.48 -0.41 1.30 16 20 C 0.01 0.19 5.15 -17.43 -0.09 0.10 16 21 N -0.90 -24.19 10.62 55.49 0.59 -23.60 16 22 Si 0.91 20.40 29.57 -169.99 -5.03 15.37 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.06 0.98 4.68 -3.05 -0.01 0.96 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.20 7.03 -51.93 -0.37 0.83 16 32 H 0.24 2.80 4.87 -52.49 -0.26 2.55 16 33 H 0.07 1.04 7.99 -51.93 -0.42 0.63 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.24 6.45 -51.93 -0.33 0.90 16 37 H 0.03 0.76 7.25 -51.93 -0.38 0.39 16 38 H 0.05 1.13 7.31 -51.93 -0.38 0.75 16 39 H 0.00 0.02 6.46 -51.93 -0.34 -0.32 16 40 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 41 H 0.08 1.27 5.76 -51.93 -0.30 0.98 16 42 H 0.07 0.96 7.00 -51.93 -0.36 0.59 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -29.93 343.95 -5.49 -35.42 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.62 Total: -0.54 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 0.13 Total: 10.17 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.07 Total: -51.59 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.09 Total: -14.02 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.93 -5.49 -35.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972710673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.157 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds