Wall clock time and date at job start Tue Mar 31 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52699 * 2 1 4 4 C 1.53196 * 109.48804 * 239.90760 * 2 1 3 5 5 N 1.46924 * 108.76800 * 185.40124 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.60116 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.46911 * 179.97438 * 8 6 5 10 10 C 1.36595 * 127.12054 * 265.01960 * 9 8 6 11 11 N 1.30333 * 107.28088 * 180.02562 * 10 9 8 12 12 N 1.28536 * 109.99308 * 0.02562 * 11 10 9 13 13 C 1.31030 * 109.85966 * 359.71327 * 12 11 10 14 14 O 1.35534 * 126.45297 * 180.30628 * 13 12 11 15 15 C 1.46932 * 118.73828 * 53.61710 * 5 4 2 16 16 C 1.53196 * 108.77384 * 306.39467 * 15 5 4 17 17 C 1.53036 * 109.31536 * 54.63418 * 16 15 5 18 18 H 1.09007 * 109.46211 * 58.63452 * 17 16 15 19 19 N 1.46496 * 109.46261 * 178.61527 * 17 16 15 20 20 C 1.36945 * 119.99718 * 275.02605 * 19 17 16 21 21 H 1.07997 * 119.99756 * 359.97438 * 20 19 17 22 22 C 1.38805 * 119.99878 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47174 * 270.00277 * 24 22 20 26 26 H 1.48501 * 109.47062 * 30.00228 * 24 22 20 27 27 H 1.48499 * 109.46981 * 150.00382 * 24 22 20 28 28 H 1.09002 * 109.47271 * 299.92312 * 1 2 3 29 29 H 1.09001 * 109.46821 * 59.91874 * 1 2 3 30 30 H 1.08993 * 109.47267 * 179.91522 * 1 2 3 31 31 H 1.09005 * 109.57902 * 65.62432 * 4 2 1 32 32 H 1.08993 * 109.72026 * 305.26324 * 4 2 1 33 33 H 1.08990 * 109.47106 * 299.99661 * 8 6 5 34 34 H 1.09007 * 109.46881 * 59.99892 * 8 6 5 35 35 H 1.07994 * 126.36174 * 0.04765 * 10 9 8 36 36 H 0.96703 * 113.99790 * 270.17109 * 14 13 12 37 37 H 1.08990 * 109.58621 * 186.60591 * 15 5 4 38 38 H 1.09004 * 109.69937 * 66.25035 * 15 5 4 39 39 H 1.08996 * 109.49437 * 294.68012 * 16 15 5 40 40 H 1.09000 * 109.52019 * 174.60075 * 16 15 5 41 41 H 0.96996 * 120.00499 * 95.02336 * 19 17 16 42 42 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5043 -0.8292 -1.1697 6 6 4.2807 -0.3864 -2.1785 7 8 3.7725 0.1049 -3.1640 8 6 5.7802 -0.5017 -2.0818 9 7 6.3913 0.0454 -3.2957 10 6 6.7755 -0.6465 -4.4090 11 7 7.2710 0.2173 -5.2499 12 7 7.2255 1.3983 -4.7446 13 6 6.6898 1.3510 -3.5498 14 8 6.4753 2.4019 -2.7212 15 6 4.1053 -1.4265 0.0307 16 6 3.5707 -0.6948 1.2659 17 6 2.0408 -0.7231 1.2484 18 1 1.6968 -1.7574 1.2352 19 7 1.5264 -0.0529 2.4453 20 6 1.3957 -0.7494 3.6171 21 1 1.6715 -1.7927 3.6588 22 6 0.9089 -0.1143 4.7513 23 7 0.5724 1.1572 4.7004 24 14 0.7300 -1.0644 6.3496 25 1 -0.6222 -1.6749 6.4139 26 1 1.7590 -2.1336 6.4078 27 1 0.9109 -0.1402 7.4978 28 1 -0.3634 0.5126 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3633 -1.0276 -0.0015 31 1 1.7633 -0.1583 -2.1389 32 1 1.6053 -1.7219 -1.3005 33 1 6.1323 0.0561 -1.2142 34 1 6.0579 -1.5506 -1.9766 35 1 6.6852 -1.7115 -4.5639 36 1 7.2149 2.5925 -2.1281 37 1 5.1894 -1.3242 -0.0139 38 1 3.8398 -2.4822 0.0880 39 1 3.9157 0.3391 1.2538 40 1 3.9335 -1.1888 2.1673 41 1 1.2785 0.8841 2.4078 42 1 0.2319 1.6009 5.4929 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035991721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:56 Heat of formation + Delta-G solvation = 30.786940 kcal Electronic energy + Delta-G solvation = -25996.752585 eV Core-core repulsion = 22207.690383 eV Total energy + Delta-G solvation = -3789.062202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.27323 -40.39443 -38.01612 -37.86539 -35.12056 -34.85239 -33.01729 -31.65244 -30.09396 -29.64584 -29.00278 -26.26804 -25.06458 -23.12296 -22.76224 -22.53574 -21.82554 -20.37096 -19.43157 -19.04937 -17.72266 -17.29301 -17.18205 -16.16298 -15.99689 -15.70862 -15.35510 -15.06934 -14.57493 -14.29358 -13.90374 -13.86385 -13.55970 -13.46304 -12.80671 -12.67782 -12.54753 -12.41398 -11.98800 -11.84804 -11.75623 -11.32424 -11.09179 -11.05268 -10.94007 -10.79023 -10.55646 -10.51245 -10.29546 -9.94226 -9.84684 -9.75212 -9.42457 -9.02494 -8.75842 -7.08675 -5.87938 -3.17605 1.31415 1.71750 2.22594 2.54823 2.78379 3.34460 3.39567 3.41940 3.43651 4.00577 4.07200 4.28089 4.43269 4.47500 4.75618 4.96124 5.06266 5.09876 5.13111 5.33728 5.35453 5.37368 5.54322 5.59396 5.61258 5.77917 5.92606 5.97611 6.12131 6.15173 6.20661 6.29843 6.34863 6.44644 6.64621 6.79132 6.89080 7.03693 7.16301 7.57727 7.82641 8.29887 8.40067 9.41517 9.97871 10.32353 11.34277 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.002966 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.991453 B = 9438.623605 C = 9676.323889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.599 5.599 6 C 0.498 3.502 7 O -0.527 6.527 8 C 0.089 3.911 9 N -0.473 5.473 10 C 0.172 3.828 11 N -0.282 5.282 12 N -0.288 5.288 13 C 0.365 3.635 14 O -0.432 6.432 15 C 0.104 3.896 16 C -0.154 4.154 17 C 0.184 3.816 18 H 0.049 0.951 19 N -0.720 5.720 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.282 1.282 27 H -0.292 1.292 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.225 0.775 36 H 0.405 0.595 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.668 -6.660 -11.476 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.332 5.332 6 C 0.283 3.717 7 O -0.403 6.403 8 C -0.038 4.038 9 N -0.176 5.176 10 C -0.115 4.115 11 N -0.122 5.122 12 N -0.138 5.138 13 C 0.060 3.940 14 O -0.231 6.231 15 C -0.020 4.020 16 C -0.195 4.195 17 C 0.074 3.926 18 H 0.067 0.933 19 N -0.360 5.360 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.208 1.208 27 H -0.218 1.218 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.241 0.759 36 H 0.262 0.738 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.218 0.782 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.437 -5.777 -13.251 18.433 hybrid contribution -0.442 -0.715 2.759 2.884 sum 10.995 -6.492 -10.492 16.526 Atomic orbital electron populations 1.21659 0.93912 1.01848 1.02015 1.21752 0.96795 1.00050 0.94401 0.91188 1.21779 0.77594 1.01117 0.99657 1.48145 1.07546 1.59861 1.17675 1.20433 0.88621 0.79088 0.83596 1.90791 1.74614 1.43917 1.31018 1.21800 0.92420 1.03056 0.86495 1.46527 1.46853 1.08126 1.16075 1.26343 1.00648 1.00831 0.83629 1.74207 1.18818 0.95126 1.24070 1.74615 1.19066 1.15342 1.04812 1.22132 1.00252 0.79735 0.91841 1.85004 1.44248 1.42149 1.51737 1.21966 0.97048 0.98004 0.84937 1.22723 1.00754 1.00391 0.95619 1.20180 0.90176 0.95785 0.86499 0.93316 1.42405 1.76444 1.11437 1.05733 1.19190 1.36380 0.94071 0.87657 0.91217 1.24744 1.01870 0.95998 0.98112 1.69657 1.49669 1.09473 1.29033 0.86225 0.77832 0.78674 0.83618 1.21698 1.20790 1.21796 0.90621 0.93757 0.92977 0.89321 0.91193 0.85642 0.85127 0.75912 0.73773 0.90864 0.90751 0.92080 0.90249 0.78163 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.03 37.15 0.34 -1.75 16 2 C -0.11 -1.65 2.46 -90.50 -0.22 -1.87 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.12 1.55 5.72 -3.71 -0.02 1.53 16 5 N -0.60 -6.76 2.97 -172.76 -0.51 -7.28 16 6 C 0.50 5.86 7.77 -10.98 -0.09 5.78 16 7 O -0.53 -8.70 15.84 5.56 0.09 -8.61 16 8 C 0.09 0.65 5.04 -5.19 -0.03 0.63 16 9 N -0.47 -4.73 2.29 -121.04 -0.28 -5.01 16 10 C 0.17 1.68 12.80 -89.08 -1.14 0.54 16 11 N -0.28 -3.82 12.18 29.87 0.36 -3.46 16 12 N -0.29 -4.26 12.22 29.65 0.36 -3.89 16 13 C 0.37 4.54 9.22 -88.76 -0.82 3.72 16 14 O -0.43 -4.58 13.62 -18.30 -0.25 -4.83 16 15 C 0.10 0.98 6.34 -3.70 -0.02 0.95 16 16 C -0.15 -2.14 5.66 -26.61 -0.15 -2.29 16 17 C 0.18 3.11 2.19 -67.89 -0.15 2.96 16 18 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 19 N -0.72 -16.14 4.41 -53.38 -0.24 -16.38 16 20 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 24 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.07 1.38 7.36 -51.93 -0.38 0.99 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.13 0.67 7.69 -51.93 -0.40 0.27 16 34 H 0.13 0.44 7.94 -51.93 -0.41 0.03 16 35 H 0.22 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.40 1.80 9.06 45.56 0.41 2.21 16 37 H 0.07 0.44 5.93 -51.93 -0.31 0.13 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.38 9.45 7.50 -40.82 -0.31 9.15 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -36.25 350.87 -7.13 -43.38 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.11 Total: 7.08 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.55 Total: 3.54 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.42 Total: -61.98 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.16 Total: -13.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.25 -7.13 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035991721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.163 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds