Wall clock time and date at job start Tue Mar 31 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08991 * 109.46940 * 2 1 4 4 C 1.52997 * 109.46724 * 240.00188 * 2 1 3 5 5 N 1.46913 * 109.46680 * 185.00026 * 4 2 1 6 6 C 1.46897 * 110.99801 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47022 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99759 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99882 * 179.97438 * 7 6 5 10 10 C 1.37102 * 120.00011 * 179.97438 * 9 7 6 11 11 H 1.08008 * 119.99614 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00158 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00347 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00057 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46769 * 60.00133 * 14 12 10 16 16 H 1.48494 * 109.47357 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47000 * 300.00241 * 14 12 10 18 18 N 1.46508 * 109.46829 * 120.00127 * 2 1 3 19 19 C 1.46504 * 119.99897 * 60.00388 * 18 2 1 20 20 C 1.34776 * 119.99545 * 239.99715 * 18 2 1 21 21 O 1.21598 * 120.00402 * 5.39885 * 20 18 2 22 22 C 1.47408 * 119.99406 * 185.39781 * 20 18 2 23 23 N 1.31615 * 125.86687 * 6.29710 * 22 20 18 24 24 C 1.33099 * 109.09418 * 179.97438 * 23 22 20 25 25 C 1.35560 * 108.35102 * 0.02562 * 24 23 22 26 26 N 1.35399 * 107.16082 * 359.76953 * 25 24 23 27 27 H 0.97008 * 126.43682 * 180.24241 * 26 25 24 28 28 H 1.09005 * 109.47164 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46863 * 299.99871 * 1 2 3 30 30 H 1.08995 * 109.47009 * 60.00172 * 1 2 3 31 31 H 1.09001 * 109.47271 * 304.99694 * 4 2 1 32 32 H 1.08990 * 109.47541 * 65.00503 * 4 2 1 33 33 H 1.00900 * 110.99284 * 56.04719 * 5 4 2 34 34 H 1.08995 * 109.47473 * 300.00332 * 6 5 4 35 35 H 1.09004 * 109.47144 * 60.00157 * 6 5 4 36 36 H 0.96995 * 120.00405 * 0.02562 * 9 7 6 37 37 H 0.96991 * 120.00309 * 179.97438 * 13 12 10 38 38 H 1.08995 * 109.46952 * 95.36507 * 19 18 2 39 39 H 1.09003 * 109.46819 * 335.36169 * 19 18 2 40 40 H 1.09002 * 109.46537 * 215.36741 * 19 18 2 41 41 H 1.08008 * 125.82192 * 180.02562 * 24 23 22 42 42 H 1.08008 * 126.41990 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3762 7 6 5.5317 -1.6043 -2.2808 8 8 6.1067 -1.1394 -1.3193 9 7 6.2354 -2.2009 -3.2633 10 6 7.6013 -2.2809 -3.1768 11 1 8.1134 -1.8662 -2.3210 12 6 8.3268 -2.8955 -4.1899 13 7 7.7038 -3.3997 -5.2314 14 14 10.1879 -3.0052 -4.0716 15 1 10.5624 -3.7638 -2.8512 16 1 10.7199 -3.7013 -5.2705 17 1 10.7607 -1.6370 -3.9993 18 7 2.0184 -0.6907 1.1962 19 6 1.6645 -2.0933 1.4280 20 6 2.7932 -0.0357 2.0834 21 8 3.0064 1.1532 1.9431 22 6 3.3823 -0.7606 3.2237 23 7 3.3257 -2.0603 3.4235 24 6 3.9667 -2.3556 4.5519 25 6 4.4449 -1.2046 5.0850 26 7 4.0851 -0.1992 4.2526 27 1 4.2869 0.7429 4.3660 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2952 32 1 1.7517 -0.1583 -2.1369 33 1 3.7995 -1.2884 -0.3433 34 1 3.6095 -2.5198 -2.4295 35 1 3.7558 -0.9587 -3.2720 36 1 5.7755 -2.5730 -4.0320 37 1 8.2103 -3.8284 -5.9388 38 1 2.4625 -2.7356 1.0557 39 1 0.7371 -2.3253 0.9042 40 1 1.5304 -2.2624 2.4964 41 1 4.0857 -3.3438 4.9713 42 1 5.0100 -1.1081 6.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753690808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:18 Heat of formation + Delta-G solvation = 5.530395 kcal Electronic energy + Delta-G solvation = -25653.673400 eV Core-core repulsion = 21863.515992 eV Total energy + Delta-G solvation = -3790.157408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.37239 -39.81908 -38.20164 -36.86966 -34.64717 -33.75923 -32.89009 -31.85195 -31.14369 -29.57989 -27.54775 -26.95169 -25.01880 -24.09171 -23.05005 -21.68957 -21.17218 -19.74509 -19.11522 -18.22061 -17.83449 -16.97578 -16.36367 -15.99534 -15.74376 -15.34035 -14.71942 -14.49780 -14.31033 -14.20814 -14.02506 -13.81116 -13.65870 -13.44755 -13.19669 -12.87265 -12.59455 -12.35574 -12.31893 -11.82816 -11.59901 -11.54370 -11.37051 -11.02397 -10.89978 -10.41332 -10.40815 -10.31820 -10.16994 -10.08498 -9.45324 -8.86773 -8.66763 -8.36269 -7.97708 -7.90097 -6.37066 -3.77617 1.26705 2.39143 2.50762 3.23400 3.26610 3.28303 3.33041 3.33459 3.96990 4.07611 4.16014 4.35533 4.73003 4.90416 5.00862 5.06736 5.15436 5.18022 5.21608 5.23832 5.30893 5.47058 5.56268 5.62448 5.67445 5.76786 5.84858 5.91301 5.96279 6.03540 6.10007 6.32277 6.36171 6.54678 6.95516 7.20198 7.28528 7.59423 7.61394 7.73168 8.05078 8.11340 8.67058 9.22915 9.59669 10.12041 10.80832 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.003476 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.199678 B = 8054.059231 C = 9416.407054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.111 0.889 4 C 0.050 3.950 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.581 6.581 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.101 0.899 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.587 5.587 19 C 0.079 3.921 20 C 0.609 3.391 21 O -0.535 6.535 22 C 0.152 3.848 23 N -0.438 5.438 24 C -0.031 4.031 25 C -0.026 4.026 26 N -0.524 5.524 27 H 0.430 0.570 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.349 0.651 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.178 0.822 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.515 2.007 15.716 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.129 0.871 4 C -0.081 4.081 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.227 3.773 8 O -0.465 6.465 9 N -0.202 5.202 10 C -0.428 4.428 11 H 0.119 0.881 12 C -0.179 4.179 13 N -0.545 5.545 14 Si 0.757 3.243 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.319 5.319 19 C -0.063 4.063 20 C 0.395 3.605 21 O -0.411 6.411 22 C -0.109 4.109 23 N -0.161 5.161 24 C -0.184 4.184 25 C -0.165 4.165 26 N -0.126 5.126 27 H 0.269 0.731 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.169 0.831 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.195 0.805 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.239 2.933 15.272 21.773 hybrid contribution 1.085 -0.498 0.289 1.228 sum -14.154 2.435 15.561 21.175 Atomic orbital electron populations 1.22113 0.94378 1.02484 1.02756 1.21271 0.93607 0.98841 0.82714 0.87081 1.22345 0.89177 0.98958 0.97616 1.60035 1.07455 1.57375 1.05025 1.21672 0.95067 0.96897 0.94528 1.19831 0.88139 0.84123 0.85238 1.90534 1.71142 1.51342 1.33475 1.41842 1.07352 1.51001 1.19959 1.19650 0.81581 1.35014 1.06540 0.88082 1.25239 1.00607 0.96838 0.95222 1.69603 1.36726 1.38736 1.09424 0.85926 0.82246 0.78578 0.77514 1.19954 1.20972 1.19921 1.47468 1.49366 1.13224 1.21875 1.22067 1.00242 0.80207 1.03820 1.16445 0.78325 0.85364 0.80377 1.90831 1.60993 1.14323 1.74944 1.22637 1.04305 0.89518 0.94477 1.70435 1.18865 1.10291 1.16486 1.22566 1.02570 0.98869 0.94407 1.22976 1.06130 0.88314 0.99059 1.42931 1.39933 1.11410 1.18316 0.73084 0.92090 0.92029 0.90936 0.95090 0.89760 0.83058 0.93979 0.89571 0.77483 0.91877 0.92056 0.91650 0.88957 0.80501 0.79769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.18 37.16 0.34 -1.03 16 2 C 0.14 1.68 2.94 -67.92 -0.20 1.48 16 3 H 0.11 1.60 6.91 -51.93 -0.36 1.24 16 4 C 0.05 0.64 5.03 -3.82 -0.02 0.62 16 5 N -0.67 -11.88 6.12 -115.05 -0.70 -12.59 16 6 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 7 C 0.44 11.02 7.82 -10.99 -0.09 10.93 16 8 O -0.58 -16.80 15.78 5.54 0.09 -16.72 16 9 N -0.56 -14.86 5.29 -10.96 -0.06 -14.92 16 10 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 11 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -25.08 13.05 55.50 0.72 -24.36 16 14 Si 0.93 21.58 29.55 -169.99 -5.02 16.56 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 N -0.59 -7.60 1.83 -175.20 -0.32 -7.92 16 19 C 0.08 0.87 8.39 59.85 0.50 1.37 16 20 C 0.61 9.26 7.66 -12.53 -0.10 9.16 16 21 O -0.54 -9.46 16.44 5.28 0.09 -9.37 16 22 C 0.15 2.08 7.59 -154.52 -1.17 0.91 16 23 N -0.44 -5.71 7.94 -11.26 -0.09 -5.80 16 24 C -0.03 -0.32 11.85 -17.96 -0.21 -0.54 16 25 C -0.03 -0.22 12.00 -16.93 -0.20 -0.42 16 26 N -0.52 -5.65 6.15 -10.78 -0.07 -5.71 16 27 H 0.43 3.81 8.96 -40.82 -0.37 3.45 16 28 H 0.06 0.46 6.66 -51.93 -0.35 0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.36 7.84 -51.93 -0.41 -0.05 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.35 6.81 7.56 -39.29 -0.30 6.51 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 39 H 0.06 0.56 6.44 -51.93 -0.33 0.23 16 40 H 0.09 1.01 5.94 -51.93 -0.31 0.70 16 41 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.19 0.84 8.06 -52.48 -0.42 0.41 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -36.13 355.91 -7.05 -43.18 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -5.63 Total: 17.10 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: -1.42 Total: 15.19 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -0.51 Total: -71.29 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.17 Total: -26.09 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.13 -7.05 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753690808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.706 kcal (2) G-P(sol) polarization free energy of solvation -36.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds