Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47646 * 2 1 4 4 C 1.53001 * 109.47206 * 120.00096 * 2 1 3 5 5 N 1.46901 * 109.47384 * 174.99732 * 4 2 1 6 6 C 1.46898 * 110.99715 * 179.97438 * 5 4 2 7 7 C 1.50708 * 109.47046 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99591 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00286 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00120 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99819 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99886 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00344 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99844 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46979 * 90.00323 * 14 12 10 16 16 H 1.48497 * 109.47449 * 210.00432 * 14 12 10 17 17 H 1.48501 * 109.47203 * 330.00156 * 14 12 10 18 18 N 1.46501 * 109.47161 * 239.99377 * 2 1 3 19 19 C 1.46505 * 120.00073 * 300.00983 * 18 2 1 20 20 C 1.34776 * 119.99956 * 119.99911 * 18 2 1 21 21 O 1.21603 * 120.00195 * 356.04491 * 20 18 2 22 22 C 1.47405 * 119.99878 * 176.03866 * 20 18 2 23 23 N 1.31618 * 125.86591 * 5.61730 * 22 20 18 24 24 C 1.33101 * 109.09549 * 179.89070 * 23 22 20 25 25 C 1.35567 * 108.35042 * 0.36865 * 24 23 22 26 26 N 1.35404 * 107.16022 * 359.77791 * 25 24 23 27 27 H 0.96993 * 126.43714 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46949 * 300.00515 * 1 2 3 30 30 H 1.08997 * 109.46984 * 59.99767 * 1 2 3 31 31 H 1.09000 * 109.47559 * 54.99353 * 4 2 1 32 32 H 1.09003 * 109.46846 * 294.99445 * 4 2 1 33 33 H 1.00897 * 111.00045 * 303.94888 * 5 4 2 34 34 H 1.08997 * 109.47930 * 299.99835 * 6 5 4 35 35 H 1.09006 * 109.47386 * 60.00303 * 6 5 4 36 36 H 0.97005 * 119.99919 * 0.02562 * 9 7 6 37 37 H 0.97002 * 120.00171 * 179.97438 * 13 12 10 38 38 H 1.08992 * 109.47426 * 95.70684 * 19 18 2 39 39 H 1.09008 * 109.46796 * 215.71498 * 19 18 2 40 40 H 1.09002 * 109.46976 * 335.70404 * 19 18 2 41 41 H 1.08004 * 125.82680 * 180.13028 * 24 23 22 42 42 H 1.07998 * 126.41795 * 179.79042 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8268 1.1904 6 6 4.0302 -1.5149 2.3767 7 6 5.5316 -1.6046 2.2808 8 8 6.1065 -1.1405 1.3189 9 7 6.2354 -2.1997 3.2641 10 6 7.6012 -2.2808 3.1770 11 1 8.1131 -1.8675 2.3205 12 6 8.3268 -2.8938 4.1911 13 7 7.7039 -3.3962 5.2334 14 14 10.1877 -3.0050 4.0721 15 1 10.7965 -1.8052 4.7009 16 1 10.6569 -4.2250 4.7767 17 1 10.5892 -3.0730 2.6440 18 7 2.0183 -0.6907 -1.1961 19 6 1.6642 -2.0933 -1.4279 20 6 2.7931 -0.0358 -2.0833 21 8 3.0277 1.1473 -1.9288 22 6 3.3563 -0.7538 -3.2410 23 7 3.0958 -1.9994 -3.5772 24 6 3.7808 -2.3061 -4.6764 25 6 4.5055 -1.2211 -5.0443 26 7 4.2432 -0.2422 -4.1463 27 1 4.6152 0.6536 -4.1455 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7198 1.2953 32 1 1.7517 -0.1582 2.1369 33 1 3.7995 -1.2885 0.3434 34 1 3.7558 -0.9572 3.2721 35 1 3.6094 -2.5190 2.4309 36 1 5.7756 -2.5706 4.0335 37 1 8.2105 -3.8245 5.9411 38 1 0.7952 -2.1451 -2.0837 39 1 2.5039 -2.6075 -1.8958 40 1 1.4304 -2.5710 -0.4765 41 1 3.7651 -3.2582 -5.1859 42 1 5.1678 -1.1507 -5.8945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753690809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = 6.766716 kcal Electronic energy + Delta-G solvation = -25645.685815 eV Core-core repulsion = 21855.582018 eV Total energy + Delta-G solvation = -3790.103797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.39014 -39.81545 -38.22175 -36.87425 -34.65914 -33.77958 -32.90910 -31.84693 -31.16215 -29.58837 -27.54838 -26.93328 -25.03813 -24.09424 -23.07383 -21.70423 -21.18424 -19.76471 -19.13586 -18.19727 -17.85317 -16.97371 -16.38910 -16.01977 -15.74558 -15.31471 -14.74118 -14.50521 -14.31273 -14.23433 -14.05040 -13.81085 -13.66929 -13.46299 -13.11815 -12.90331 -12.60409 -12.51150 -12.24997 -11.85084 -11.59450 -11.56888 -11.37564 -11.05879 -10.91950 -10.44394 -10.37592 -10.29887 -10.19239 -9.99207 -9.48019 -8.87079 -8.67431 -8.37204 -7.99181 -7.91881 -6.38929 -3.79455 1.26439 2.38205 2.49596 3.19722 3.27623 3.27928 3.33427 3.33942 3.94883 4.05815 4.14260 4.34169 4.72420 4.92379 5.00582 5.05417 5.16084 5.18303 5.21290 5.22947 5.29226 5.48303 5.54308 5.63037 5.69858 5.73583 5.83198 5.91476 5.99847 6.01996 6.11707 6.30423 6.36096 6.60011 6.96176 7.20619 7.26562 7.57824 7.59328 7.70712 8.05334 8.09634 8.65039 9.21118 9.57778 10.09930 10.78983 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.003461 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.151512 B = 8087.628099 C = 9443.848860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.111 0.889 4 C 0.049 3.951 5 N -0.665 5.665 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 N -0.585 5.585 19 C 0.065 3.935 20 C 0.608 3.392 21 O -0.535 6.535 22 C 0.154 3.846 23 N -0.440 5.440 24 C -0.033 4.033 25 C -0.024 4.024 26 N -0.523 5.523 27 H 0.431 0.569 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.349 0.651 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.178 0.822 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.675 1.801 -15.325 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.129 0.871 4 C -0.082 4.082 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.227 3.773 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.195 1.195 18 N -0.318 5.318 19 C -0.078 4.078 20 C 0.394 3.606 21 O -0.411 6.411 22 C -0.107 4.107 23 N -0.164 5.164 24 C -0.185 4.185 25 C -0.164 4.164 26 N -0.124 5.124 27 H 0.270 0.730 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.195 0.805 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.527 2.761 -14.979 21.049 hybrid contribution 1.192 -0.534 -0.139 1.313 sum -13.336 2.227 -15.118 20.282 Atomic orbital electron populations 1.22089 0.94329 1.02511 1.02676 1.21267 0.93652 0.98843 0.82692 0.87087 1.22356 0.89129 0.98988 0.97700 1.60008 1.07469 1.57388 1.04965 1.21678 0.95064 0.96905 0.94529 1.19829 0.88134 0.84135 0.85245 1.90529 1.71149 1.51390 1.33501 1.41851 1.07376 1.51048 1.19858 1.19696 0.81564 1.35035 1.06477 0.88024 1.25245 1.00624 0.96833 0.95223 1.69611 1.36638 1.38796 1.09373 0.85865 0.82296 0.77625 0.78539 1.20401 1.20930 1.19476 1.47468 1.49238 1.13238 1.21822 1.22335 1.03543 0.80583 1.01316 1.16463 0.78424 0.85385 0.80364 1.90835 1.60386 1.14678 1.75185 1.22651 0.99542 0.91565 0.96963 1.70340 1.23229 1.09872 1.12927 1.22582 0.99699 0.99841 0.96396 1.22984 1.05503 0.89814 0.98081 1.42930 1.33555 1.15025 1.20883 0.72963 0.92146 0.91016 0.92064 0.95054 0.89699 0.83155 0.89533 0.93989 0.77476 0.91913 0.92492 0.87141 0.91837 0.80492 0.79742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.19 37.16 0.34 -1.06 16 2 C 0.14 1.69 2.94 -67.93 -0.20 1.49 16 3 H 0.11 1.61 6.90 -51.93 -0.36 1.25 16 4 C 0.05 0.62 5.00 -3.82 -0.02 0.60 16 5 N -0.67 -11.71 6.12 -115.05 -0.70 -12.41 16 6 C 0.05 0.94 6.17 -4.97 -0.03 0.91 16 7 C 0.44 10.89 7.82 -10.99 -0.09 10.81 16 8 O -0.58 -16.62 15.78 5.55 0.09 -16.53 16 9 N -0.56 -14.73 5.29 -10.96 -0.06 -14.79 16 10 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 11 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 14 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 N -0.59 -7.62 1.83 -175.21 -0.32 -7.95 16 19 C 0.06 0.72 8.65 59.85 0.52 1.23 16 20 C 0.61 9.25 7.67 -12.53 -0.10 9.15 16 21 O -0.54 -9.48 16.43 5.27 0.09 -9.39 16 22 C 0.15 2.10 7.68 -154.52 -1.19 0.91 16 23 N -0.44 -5.57 7.66 -11.25 -0.09 -5.66 16 24 C -0.03 -0.33 11.85 -17.96 -0.21 -0.54 16 25 C -0.02 -0.21 12.00 -16.93 -0.20 -0.42 16 26 N -0.52 -5.71 6.15 -10.78 -0.07 -5.77 16 27 H 0.43 3.99 8.96 -40.82 -0.37 3.62 16 28 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.03 0.36 6.87 -51.93 -0.36 0.00 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.35 6.66 7.56 -39.29 -0.30 6.36 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.11 1.39 5.26 -51.92 -0.27 1.12 16 40 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 41 H 0.18 1.25 8.06 -52.48 -0.42 0.82 16 42 H 0.19 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -35.63 355.41 -7.02 -42.65 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -5.60 Total: 17.34 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -1.42 Total: 14.94 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -0.51 Total: -70.77 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: 0.17 Total: -25.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.63 -7.02 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753690809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.418 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds