Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47646 * 2 1 4 4 C 1.53001 * 109.47206 * 120.00096 * 2 1 3 5 5 N 1.46901 * 109.47384 * 174.99732 * 4 2 1 6 6 C 1.46898 * 110.99715 * 179.97438 * 5 4 2 7 7 C 1.50708 * 109.47046 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99591 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00286 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00120 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99819 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99886 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00344 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99844 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46979 * 90.00323 * 14 12 10 16 16 H 1.48497 * 109.47449 * 210.00432 * 14 12 10 17 17 H 1.48501 * 109.47203 * 330.00156 * 14 12 10 18 18 N 1.46501 * 109.47161 * 239.99377 * 2 1 3 19 19 C 1.46505 * 120.00073 * 300.00983 * 18 2 1 20 20 C 1.34776 * 119.99956 * 119.99911 * 18 2 1 21 21 O 1.21603 * 120.00195 * 356.04491 * 20 18 2 22 22 C 1.47405 * 119.99878 * 176.03866 * 20 18 2 23 23 N 1.31618 * 125.86591 * 5.61730 * 22 20 18 24 24 C 1.33101 * 109.09549 * 179.89070 * 23 22 20 25 25 C 1.35567 * 108.35042 * 0.36865 * 24 23 22 26 26 N 1.35404 * 107.16022 * 359.77791 * 25 24 23 27 27 H 0.96993 * 126.43714 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46949 * 300.00515 * 1 2 3 30 30 H 1.08997 * 109.46984 * 59.99767 * 1 2 3 31 31 H 1.09000 * 109.47559 * 54.99353 * 4 2 1 32 32 H 1.09003 * 109.46846 * 294.99445 * 4 2 1 33 33 H 1.00897 * 111.00045 * 303.94888 * 5 4 2 34 34 H 1.08997 * 109.47930 * 299.99835 * 6 5 4 35 35 H 1.09006 * 109.47386 * 60.00303 * 6 5 4 36 36 H 0.97005 * 119.99919 * 0.02562 * 9 7 6 37 37 H 0.97002 * 120.00171 * 179.97438 * 13 12 10 38 38 H 1.08992 * 109.47426 * 95.70684 * 19 18 2 39 39 H 1.09008 * 109.46796 * 215.71498 * 19 18 2 40 40 H 1.09002 * 109.46976 * 335.70404 * 19 18 2 41 41 H 1.08004 * 125.82680 * 180.13028 * 24 23 22 42 42 H 1.07998 * 126.41795 * 179.79042 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8268 1.1904 6 6 4.0302 -1.5149 2.3767 7 6 5.5316 -1.6046 2.2808 8 8 6.1065 -1.1405 1.3189 9 7 6.2354 -2.1997 3.2641 10 6 7.6012 -2.2808 3.1770 11 1 8.1131 -1.8675 2.3205 12 6 8.3268 -2.8938 4.1911 13 7 7.7039 -3.3962 5.2334 14 14 10.1877 -3.0050 4.0721 15 1 10.7965 -1.8052 4.7009 16 1 10.6569 -4.2250 4.7767 17 1 10.5892 -3.0730 2.6440 18 7 2.0183 -0.6907 -1.1961 19 6 1.6642 -2.0933 -1.4279 20 6 2.7931 -0.0358 -2.0833 21 8 3.0277 1.1473 -1.9288 22 6 3.3563 -0.7538 -3.2410 23 7 3.0958 -1.9994 -3.5772 24 6 3.7808 -2.3061 -4.6764 25 6 4.5055 -1.2211 -5.0443 26 7 4.2432 -0.2422 -4.1463 27 1 4.6152 0.6536 -4.1455 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7198 1.2953 32 1 1.7517 -0.1582 2.1369 33 1 3.7995 -1.2885 0.3434 34 1 3.7558 -0.9572 3.2721 35 1 3.6094 -2.5190 2.4309 36 1 5.7756 -2.5706 4.0335 37 1 8.2105 -3.8245 5.9411 38 1 0.7952 -2.1451 -2.0837 39 1 2.5039 -2.6075 -1.8958 40 1 1.4304 -2.5710 -0.4765 41 1 3.7651 -3.2582 -5.1859 42 1 5.1678 -1.1507 -5.8945 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753690809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = -20.839768 kcal Electronic energy + Delta-G solvation = -25646.882922 eV Core-core repulsion = 21855.582018 eV Total energy + Delta-G solvation = -3791.300904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.23148 -40.87697 -40.11607 -38.06128 -36.19375 -35.58347 -33.83837 -33.29423 -32.78663 -30.41979 -28.99024 -27.87113 -26.71649 -25.17870 -24.41102 -22.48880 -22.12496 -21.17292 -20.58210 -19.91822 -19.13605 -18.03087 -17.92264 -17.22312 -16.84721 -16.71337 -16.39876 -16.03895 -15.59905 -15.39959 -15.22813 -14.95660 -14.81670 -14.56794 -14.31359 -14.09112 -13.94829 -13.54972 -13.37905 -13.21721 -13.09207 -12.96746 -12.79796 -12.49808 -12.42362 -12.13128 -11.91948 -11.53526 -11.38779 -11.31394 -10.89060 -10.40238 -10.03852 -9.82352 -9.50213 -9.29334 -8.48570 -5.97557 0.33996 1.36323 1.39924 1.49236 1.52825 1.67507 2.02526 2.27559 2.34430 2.42839 2.88978 3.18359 3.20049 3.47986 3.86372 4.00575 4.17295 4.22600 4.29165 4.33362 4.37075 4.46680 4.48125 4.55509 4.68427 4.75158 4.77124 4.84373 4.92331 5.07899 5.19155 5.28423 5.38464 5.50239 5.74793 5.86817 6.08957 6.15225 6.19551 6.31342 6.58380 6.72626 7.02964 7.10528 7.53442 8.09698 8.68864 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.003461 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.151512 B = 8087.628099 C = 9443.848860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 H 0.081 0.919 4 C 0.051 3.949 5 N -0.686 5.686 6 C 0.066 3.934 7 C 0.434 3.566 8 O -0.627 6.627 9 N -0.570 5.570 10 C -0.336 4.336 11 H 0.075 0.925 12 C -0.010 4.010 13 N -0.919 5.919 14 Si 0.993 3.007 15 H -0.271 1.271 16 H -0.267 1.267 17 H -0.274 1.274 18 N -0.582 5.582 19 C 0.069 3.931 20 C 0.596 3.404 21 O -0.578 6.578 22 C 0.109 3.891 23 N -0.447 5.447 24 C -0.054 4.054 25 C -0.001 4.001 26 N -0.524 5.524 27 H 0.435 0.565 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.336 0.664 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.279 0.721 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.206 0.794 42 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.335 0.533 -15.428 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.034 3.966 3 H 0.100 0.900 4 C -0.078 4.078 5 N -0.319 5.319 6 C -0.066 4.066 7 C 0.222 3.778 8 O -0.514 6.514 9 N -0.208 5.208 10 C -0.466 4.466 11 H 0.093 0.907 12 C -0.210 4.210 13 N -0.559 5.559 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.192 1.192 17 H -0.199 1.199 18 N -0.313 5.313 19 C -0.073 4.073 20 C 0.384 3.616 21 O -0.457 6.457 22 C -0.149 4.149 23 N -0.171 5.171 24 C -0.206 4.206 25 C -0.141 4.141 26 N -0.126 5.126 27 H 0.275 0.725 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.223 0.777 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.248 1.472 -15.030 21.461 hybrid contribution 1.403 -0.181 -0.184 1.427 sum -13.845 1.291 -15.214 20.611 Atomic orbital electron populations 1.22016 0.91329 1.03751 1.03377 1.21319 0.95814 0.97177 0.82311 0.90029 1.22484 0.86172 1.00575 0.98572 1.60005 1.10601 1.57341 1.03928 1.21554 0.90239 0.99011 0.95822 1.20946 0.90762 0.82251 0.83846 1.90497 1.72890 1.52905 1.35109 1.41901 1.06851 1.51527 1.20480 1.19638 0.83087 1.37132 1.06716 0.90700 1.26025 1.04918 0.95670 0.94418 1.69664 1.38314 1.38370 1.09577 0.84939 0.76803 0.78308 0.78334 1.19659 1.19190 1.19917 1.47599 1.48431 1.13841 1.21454 1.22358 1.03349 0.79375 1.02236 1.16844 0.78461 0.85202 0.81143 1.90787 1.62148 1.16318 1.76467 1.22461 1.02026 0.92382 0.98078 1.70288 1.23611 1.09390 1.13793 1.23228 0.99813 1.01539 0.96050 1.23784 1.04190 0.88402 0.97737 1.43085 1.33006 1.15706 1.20772 0.72450 0.90534 0.89206 0.92516 0.92657 0.88044 0.84519 0.87370 0.91288 0.76857 0.91190 0.91197 0.88607 0.90337 0.77731 0.75369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.19 71.98 0.66 -1.66 16 2 C 0.14 3.27 2.94 44.99 0.13 3.40 16 3 H 0.08 2.46 6.90 -2.39 -0.02 2.44 16 4 C 0.05 1.22 5.00 86.30 0.43 1.65 16 5 N -0.69 -23.90 6.12 -517.91 -3.17 -27.07 16 6 C 0.07 2.37 6.17 85.56 0.53 2.90 16 7 C 0.43 21.77 7.82 87.66 0.69 22.46 16 8 O -0.63 -37.12 15.78 -3.07 -0.05 -37.17 16 9 N -0.57 -30.19 5.29 -306.99 -1.62 -31.81 16 10 C -0.34 -19.65 9.68 84.04 0.81 -18.84 16 11 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 13 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 14 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 N -0.58 -15.31 1.83 -826.50 -1.52 -16.82 16 19 C 0.07 1.46 8.65 127.77 1.11 2.57 16 20 C 0.60 19.07 7.67 86.66 0.66 19.73 16 21 O -0.58 -21.91 16.43 -4.04 -0.07 -21.98 16 22 C 0.11 3.07 7.68 136.27 1.05 4.12 16 23 N -0.45 -11.24 7.66 -189.52 -1.45 -12.69 16 24 C -0.05 -1.00 11.85 83.88 0.99 -0.01 16 25 C 0.00 -0.02 12.00 83.52 1.00 0.98 16 26 N -0.52 -11.46 6.15 -188.01 -1.16 -12.62 16 27 H 0.44 8.34 8.96 -92.71 -0.83 7.51 16 28 H 0.08 0.99 7.67 -2.39 -0.02 0.97 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.09 6.87 -2.39 -0.02 1.07 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.34 13.06 7.56 -89.70 -0.68 12.39 16 34 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.40 19.76 7.90 -92.70 -0.73 19.03 16 37 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 2.41 5.26 -2.38 -0.01 2.39 16 40 H 0.08 1.40 6.54 -2.39 -0.02 1.39 16 41 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.23 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -80.53 355.41 0.66 -79.87 By element: Atomic # 1 Polarization: 48.33 SS G_CDS: -1.15 Total: 47.18 kcal Atomic # 6 Polarization: 28.68 SS G_CDS: 8.53 Total: 37.21 kcal Atomic # 7 Polarization: -142.14 SS G_CDS: -8.63 Total: -150.77 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -0.11 Total: -59.15 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -80.53 0.66 -79.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753690809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.029 kcal (2) G-P(sol) polarization free energy of solvation -80.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds