Wall clock time and date at job start Tue Mar 31 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.28868 * 2 1 4 4 C 1.54260 * 110.31975 * 122.23624 * 2 1 3 5 5 C 1.54380 * 105.06170 * 118.89688 * 4 2 1 6 6 N 1.48564 * 104.59265 * 23.84986 * 5 4 2 7 7 C 1.46906 * 110.99738 * 200.96294 * 6 5 4 8 8 C 1.50702 * 109.46632 * 285.41720 * 7 6 5 9 9 O 1.21280 * 120.00447 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99290 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99638 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47090 * 90.00235 * 11 10 8 13 13 H 1.08001 * 120.00036 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99950 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00086 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47171 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47311 * 120.00112 * 16 14 12 19 19 H 1.48499 * 109.47047 * 240.00182 * 16 14 12 20 20 C 1.46497 * 120.00578 * 0.02562 * 10 8 7 21 21 C 1.53005 * 109.47015 * 89.99639 * 20 10 8 22 22 C 1.47204 * 109.46666 * 180.02562 * 21 20 10 23 23 N 8.44716 * 105.34795 * 229.91074 * 2 1 3 24 24 C 1.48560 * 104.22094 * 320.51711 * 6 5 4 25 25 H 1.08998 * 110.51278 * 280.65407 * 24 6 5 26 26 C 1.52999 * 110.40886 * 158.26289 * 24 6 5 27 27 O 1.42903 * 109.47256 * 69.83106 * 26 24 6 28 28 H 1.09001 * 109.47350 * 182.12825 * 1 2 3 29 29 H 1.09003 * 109.47274 * 302.13604 * 1 2 3 30 30 H 1.09005 * 109.46760 * 62.12462 * 1 2 3 31 31 H 1.09004 * 110.31973 * 237.79038 * 4 2 1 32 32 H 1.08992 * 110.32853 * 359.89439 * 4 2 1 33 33 H 1.09003 * 110.41225 * 142.62801 * 5 4 2 34 34 H 1.09003 * 110.40736 * 264.95360 * 5 4 2 35 35 H 1.08994 * 109.47143 * 45.41709 * 7 6 5 36 36 H 1.08992 * 109.46991 * 165.42023 * 7 6 5 37 37 H 1.09000 * 109.47083 * 210.00226 * 11 10 8 38 38 H 1.08996 * 109.47166 * 330.00197 * 11 10 8 39 39 H 0.97003 * 119.99485 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.47517 * 209.99793 * 20 10 8 41 41 H 1.09004 * 109.47022 * 329.99955 * 20 10 8 42 42 H 1.08994 * 109.47329 * 299.99750 * 21 20 10 43 43 H 1.08996 * 109.47159 * 60.00453 * 21 20 10 44 44 H 1.08997 * 109.47286 * 309.82666 * 26 24 6 45 45 H 1.09008 * 109.47201 * 189.82447 * 26 24 6 46 46 H 0.96700 * 114.00311 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0657 -0.7716 1.2236 5 6 2.8806 -1.9428 0.6341 6 7 3.2693 -1.4822 -0.7238 7 6 3.6067 -2.6203 -1.5892 8 6 4.9564 -3.1653 -1.1988 9 8 5.5760 -2.6562 -0.2889 10 7 5.4744 -4.2193 -1.8601 11 6 6.7868 -4.7488 -1.4809 12 6 6.6138 -5.8147 -0.4297 13 1 5.6251 -6.0722 -0.0794 14 6 7.7175 -6.4618 0.0840 15 7 8.9213 -6.1486 -0.3429 16 14 7.5029 -7.7835 1.3865 17 1 6.0590 -7.9473 1.6924 18 1 8.0505 -9.0686 0.8826 19 1 8.2286 -7.3857 2.6196 20 6 4.7259 -4.8347 -2.9588 21 6 5.0988 -4.1510 -4.2758 22 6 4.3461 -4.7690 -5.3796 23 7 3.7658 -5.2458 -6.2320 24 6 2.0662 -0.7699 -1.2259 25 1 1.3221 -1.4819 -1.5830 26 6 2.4497 0.2041 -2.3418 27 8 2.8323 -0.5316 -3.5056 28 1 -0.3634 -1.0269 0.0382 29 1 -0.3634 0.5467 0.8702 30 1 -0.3633 0.4805 -0.9085 31 1 2.7081 -0.1285 1.8252 32 1 1.2388 -1.1488 1.8252 33 1 3.7670 -2.1320 1.2396 34 1 2.2652 -2.8404 0.5713 35 1 2.8533 -3.3996 -1.4749 36 1 3.6344 -2.2912 -2.6279 37 1 7.2723 -5.1782 -2.3573 38 1 7.4027 -3.9425 -1.0829 39 1 9.6978 -6.6042 0.0184 40 1 4.9722 -5.8949 -3.0173 41 1 3.6569 -4.7193 -2.7795 42 1 4.8524 -3.0909 -4.2174 43 1 6.1677 -4.2663 -4.4551 44 1 3.2841 0.8233 -2.0127 45 1 1.5964 0.8399 -2.5783 46 1 3.0893 0.0231 -4.2548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189727694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:20 Heat of formation + Delta-G solvation = -54.266145 kcal Electronic energy + Delta-G solvation = -26614.153530 eV Core-core repulsion = 22924.943493 eV Total energy + Delta-G solvation = -3689.210037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.91741 -38.60958 -36.75529 -36.42148 -35.09428 -33.44263 -32.74999 -30.73105 -30.37754 -28.87373 -27.20105 -25.22601 -23.91213 -23.82011 -22.52764 -20.77416 -20.17574 -18.31433 -17.51335 -17.27807 -16.49435 -16.35563 -16.12021 -15.65931 -15.25089 -14.78469 -14.65764 -14.45876 -13.90948 -13.73698 -13.61736 -13.52465 -13.11634 -13.03637 -12.69267 -12.38089 -12.37301 -12.32895 -12.05617 -11.80816 -11.69315 -11.46840 -11.23116 -11.05543 -11.00093 -10.91711 -10.80927 -10.74177 -10.58505 -10.48926 -10.14639 -10.05503 -9.63166 -8.89581 -8.43822 -8.24642 -7.72785 -6.04920 -4.09087 2.81407 2.89851 3.29880 3.37485 3.40088 3.49012 3.60592 3.96856 4.05282 4.34565 4.44096 4.56470 4.76719 4.83018 5.08066 5.14915 5.16392 5.16922 5.23637 5.27924 5.29998 5.34812 5.39681 5.42681 5.53081 5.58393 5.60140 5.75492 5.82349 5.89660 5.90812 5.92912 6.05741 6.16460 6.18817 6.31795 6.91294 6.98240 7.15087 7.44802 7.50470 7.53263 7.65830 7.92104 8.23078 8.38884 8.91463 9.13951 9.56434 11.03149 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.004573 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.776761 B = 6121.544359 C = 7938.210083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.081 0.919 4 C -0.119 4.119 5 C 0.032 3.968 6 N -0.480 5.480 7 C 0.020 3.980 8 C 0.511 3.489 9 O -0.518 6.518 10 N -0.601 5.601 11 C 0.246 3.754 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.120 3.880 21 C -0.051 4.051 22 C 0.220 3.780 23 N -0.450 5.450 24 C 0.064 3.936 25 H 0.058 0.942 26 C 0.091 3.909 27 O -0.572 6.572 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.262 0.738 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.009 13.007 -3.787 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.157 4.157 5 C -0.095 4.095 6 N -0.204 5.204 7 C -0.111 4.111 8 C 0.297 3.703 9 O -0.392 6.392 10 N -0.334 5.334 11 C 0.127 3.873 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.007 4.007 21 C -0.093 4.093 22 C -0.098 4.098 23 N -0.127 5.127 24 C -0.045 4.045 25 H 0.076 0.924 26 C 0.013 3.987 27 O -0.377 6.377 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.977 12.352 -4.122 19.846 hybrid contribution -0.364 -0.784 0.563 1.032 sum -15.341 11.568 -3.559 19.540 Atomic orbital electron populations 1.21885 0.94586 1.01951 1.01747 1.21804 0.95265 0.99848 0.93935 0.90083 1.22381 0.99212 0.97204 0.96866 1.23192 0.99682 0.95618 0.91052 1.65082 1.31287 1.22398 1.01601 1.22430 0.95724 0.92877 1.00078 1.20209 0.87185 0.80096 0.82838 1.90662 1.61361 1.58379 1.28841 1.48199 1.22019 1.30895 1.32282 1.19309 0.77698 0.94615 0.95674 1.21464 0.93175 1.19524 1.22257 0.92466 1.24910 0.95065 0.97275 0.96751 1.69935 0.97860 1.42182 1.43302 0.86484 0.78179 0.81338 0.81649 1.19874 1.21026 1.20912 1.21260 0.96318 0.98755 0.84359 1.19925 1.00146 1.00610 0.88596 1.29136 0.93347 0.93235 0.94084 1.81188 1.10402 1.09701 1.11408 1.22743 0.92025 0.95955 0.93784 0.92410 1.22170 0.98369 0.93221 0.84967 1.86416 1.89437 1.37860 1.24019 0.92582 0.92268 0.92653 0.90819 0.91317 0.88484 0.94306 0.92809 0.86503 0.94870 0.93599 0.92794 0.88984 0.90985 0.87245 0.86610 0.92462 0.93639 0.77544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.90 37.16 0.33 -0.75 16 2 C -0.09 -0.84 3.21 -89.24 -0.29 -1.12 16 3 H 0.08 0.72 7.86 -51.93 -0.41 0.31 16 4 C -0.12 -1.28 6.65 -25.35 -0.17 -1.45 16 5 C 0.03 0.46 5.92 -2.18 -0.01 0.45 16 6 N -0.48 -6.96 4.66 -223.57 -1.04 -8.00 16 7 C 0.02 0.30 3.81 -4.97 -0.02 0.28 16 8 C 0.51 9.98 7.52 -10.98 -0.08 9.90 16 9 O -0.52 -12.44 14.80 5.56 0.08 -12.35 16 10 N -0.60 -11.52 2.46 -175.05 -0.43 -11.95 16 11 C 0.25 5.98 5.16 -5.19 -0.03 5.95 16 12 C -0.53 -14.26 9.39 -34.44 -0.32 -14.58 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 16 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C 0.12 1.72 5.17 -4.04 -0.02 1.70 16 21 C -0.05 -0.59 6.03 -29.51 -0.18 -0.77 16 22 C 0.22 2.84 15.43 -20.76 -0.32 2.52 16 23 N -0.45 -6.90 18.54 42.15 0.78 -6.12 16 24 C 0.06 0.71 2.20 -66.07 -0.15 0.56 16 25 H 0.06 0.66 7.72 -51.93 -0.40 0.26 16 26 C 0.09 0.86 6.59 37.16 0.24 1.10 16 27 O -0.57 -5.50 11.38 -35.23 -0.40 -5.90 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.64 7.71 -51.93 -0.40 0.24 16 33 H 0.10 1.67 7.24 -51.93 -0.38 1.30 16 34 H 0.04 0.54 7.76 -51.93 -0.40 0.13 16 35 H 0.05 0.76 7.03 -51.93 -0.36 0.40 16 36 H 0.12 1.59 4.81 -51.93 -0.25 1.34 16 37 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 41 H 0.07 0.91 6.44 -51.93 -0.33 0.57 16 42 H 0.11 1.10 7.22 -51.93 -0.38 0.73 16 43 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 46 H 0.38 2.05 9.12 45.56 0.42 2.47 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -34.06 376.98 -7.34 -41.40 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.62 Total: 0.46 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.11 Total: 5.42 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.05 Total: -51.15 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.32 Total: -18.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.06 -7.34 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189727694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.868 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds