Wall clock time and date at job start Tue Mar 31 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.28868 * 2 1 4 4 C 1.54260 * 110.31975 * 122.23624 * 2 1 3 5 5 C 1.54380 * 105.06170 * 118.89688 * 4 2 1 6 6 N 1.48564 * 104.59265 * 23.84986 * 5 4 2 7 7 C 1.46906 * 110.99738 * 200.96294 * 6 5 4 8 8 C 1.50702 * 109.46632 * 285.41720 * 7 6 5 9 9 O 1.21280 * 120.00447 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99290 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99638 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47090 * 90.00235 * 11 10 8 13 13 H 1.08001 * 120.00036 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99950 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00086 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99862 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47171 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47311 * 120.00112 * 16 14 12 19 19 H 1.48499 * 109.47047 * 240.00182 * 16 14 12 20 20 C 1.46497 * 120.00578 * 0.02562 * 10 8 7 21 21 C 1.53005 * 109.47015 * 89.99639 * 20 10 8 22 22 C 1.47204 * 109.46666 * 180.02562 * 21 20 10 23 23 N 8.44716 * 105.34795 * 229.91074 * 2 1 3 24 24 C 1.48560 * 104.22094 * 320.51711 * 6 5 4 25 25 H 1.08998 * 110.51278 * 280.65407 * 24 6 5 26 26 C 1.52999 * 110.40886 * 158.26289 * 24 6 5 27 27 O 1.42903 * 109.47256 * 69.83106 * 26 24 6 28 28 H 1.09001 * 109.47350 * 182.12825 * 1 2 3 29 29 H 1.09003 * 109.47274 * 302.13604 * 1 2 3 30 30 H 1.09005 * 109.46760 * 62.12462 * 1 2 3 31 31 H 1.09004 * 110.31973 * 237.79038 * 4 2 1 32 32 H 1.08992 * 110.32853 * 359.89439 * 4 2 1 33 33 H 1.09003 * 110.41225 * 142.62801 * 5 4 2 34 34 H 1.09003 * 110.40736 * 264.95360 * 5 4 2 35 35 H 1.08994 * 109.47143 * 45.41709 * 7 6 5 36 36 H 1.08992 * 109.46991 * 165.42023 * 7 6 5 37 37 H 1.09000 * 109.47083 * 210.00226 * 11 10 8 38 38 H 1.08996 * 109.47166 * 330.00197 * 11 10 8 39 39 H 0.97003 * 119.99485 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.47517 * 209.99793 * 20 10 8 41 41 H 1.09004 * 109.47022 * 329.99955 * 20 10 8 42 42 H 1.08994 * 109.47329 * 299.99750 * 21 20 10 43 43 H 1.08996 * 109.47159 * 60.00453 * 21 20 10 44 44 H 1.08997 * 109.47286 * 309.82666 * 26 24 6 45 45 H 1.09008 * 109.47201 * 189.82447 * 26 24 6 46 46 H 0.96700 * 114.00311 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0657 -0.7716 1.2236 5 6 2.8806 -1.9428 0.6341 6 7 3.2693 -1.4822 -0.7238 7 6 3.6067 -2.6203 -1.5892 8 6 4.9564 -3.1653 -1.1988 9 8 5.5760 -2.6562 -0.2889 10 7 5.4744 -4.2193 -1.8601 11 6 6.7868 -4.7488 -1.4809 12 6 6.6138 -5.8147 -0.4297 13 1 5.6251 -6.0722 -0.0794 14 6 7.7175 -6.4618 0.0840 15 7 8.9213 -6.1486 -0.3429 16 14 7.5029 -7.7835 1.3865 17 1 6.0590 -7.9473 1.6924 18 1 8.0505 -9.0686 0.8826 19 1 8.2286 -7.3857 2.6196 20 6 4.7259 -4.8347 -2.9588 21 6 5.0988 -4.1510 -4.2758 22 6 4.3461 -4.7690 -5.3796 23 7 3.7658 -5.2458 -6.2320 24 6 2.0662 -0.7699 -1.2259 25 1 1.3221 -1.4819 -1.5830 26 6 2.4497 0.2041 -2.3418 27 8 2.8323 -0.5316 -3.5056 28 1 -0.3634 -1.0269 0.0382 29 1 -0.3634 0.5467 0.8702 30 1 -0.3633 0.4805 -0.9085 31 1 2.7081 -0.1285 1.8252 32 1 1.2388 -1.1488 1.8252 33 1 3.7670 -2.1320 1.2396 34 1 2.2652 -2.8404 0.5713 35 1 2.8533 -3.3996 -1.4749 36 1 3.6344 -2.2912 -2.6279 37 1 7.2723 -5.1782 -2.3573 38 1 7.4027 -3.9425 -1.0829 39 1 9.6978 -6.6042 0.0184 40 1 4.9722 -5.8949 -3.0173 41 1 3.6569 -4.7193 -2.7795 42 1 4.8524 -3.0909 -4.2174 43 1 6.1677 -4.2663 -4.4551 44 1 3.2841 0.8233 -2.0127 45 1 1.5964 0.8399 -2.5783 46 1 3.0893 0.0231 -4.2548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189727694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:19 Heat of formation + Delta-G solvation = -79.373087 kcal Electronic energy + Delta-G solvation = -26615.242248 eV Core-core repulsion = 22924.943493 eV Total energy + Delta-G solvation = -3690.298755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.11688 -39.86690 -37.94911 -37.15515 -36.60323 -34.92991 -34.26204 -32.13302 -31.27690 -30.11960 -28.66581 -26.48916 -25.30018 -24.63761 -24.19953 -21.82356 -21.00916 -19.77118 -18.79886 -18.32638 -17.96955 -17.82407 -17.20357 -16.88711 -16.46821 -16.11736 -15.98627 -15.69059 -15.36892 -14.78197 -14.70205 -14.36882 -14.33115 -14.08015 -13.83990 -13.77565 -13.56716 -13.52774 -13.27205 -13.05692 -12.99874 -12.78641 -12.69860 -12.54134 -12.36334 -12.18151 -12.06007 -11.81048 -11.74533 -11.64739 -11.57942 -11.35864 -10.78049 -10.58634 -10.42704 -9.43315 -9.37041 -8.17227 -6.29582 1.38490 1.40764 1.51384 1.69788 1.84925 1.96318 2.24866 2.44042 2.98454 3.13635 3.21874 3.30661 3.67063 3.83640 3.97744 4.02991 4.09045 4.13485 4.27424 4.33392 4.39280 4.50779 4.55002 4.58257 4.60522 4.67784 4.83283 4.85576 4.89325 4.98354 5.05481 5.06216 5.12846 5.18333 5.25256 5.30894 5.35314 5.45991 5.63192 5.88274 5.94197 6.05802 6.14760 6.60857 6.77983 6.84698 7.02326 7.36168 7.60211 8.89616 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.004573 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.776761 B = 6121.544359 C = 7938.210083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.089 0.911 4 C -0.114 4.114 5 C 0.030 3.970 6 N -0.501 5.501 7 C 0.036 3.964 8 C 0.504 3.496 9 O -0.572 6.572 10 N -0.601 5.601 11 C 0.262 3.738 12 C -0.538 4.538 13 H 0.050 0.950 14 C 0.011 3.989 15 N -0.925 5.925 16 Si 0.958 3.042 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.284 1.284 20 C 0.116 3.884 21 C -0.037 4.037 22 C 0.247 3.753 23 N -0.487 5.487 24 C 0.062 3.938 25 H 0.060 0.940 26 C 0.093 3.907 27 O -0.588 6.588 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.034 0.966 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.133 0.867 43 H 0.121 0.879 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.429 13.615 -4.559 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.107 0.893 4 C -0.152 4.152 5 C -0.098 4.098 6 N -0.226 5.226 7 C -0.095 4.095 8 C 0.293 3.707 9 O -0.451 6.451 10 N -0.333 5.333 11 C 0.141 3.859 12 C -0.577 4.577 13 H 0.069 0.931 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.784 3.216 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.210 1.210 20 C -0.009 4.009 21 C -0.078 4.078 22 C -0.070 4.070 23 N -0.165 5.165 24 C -0.046 4.046 25 H 0.078 0.922 26 C 0.015 3.985 27 O -0.397 6.397 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.151 0.849 43 H 0.139 0.861 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -17.434 12.961 -4.946 22.280 hybrid contribution 0.420 -0.943 0.798 1.305 sum -17.014 12.018 -4.148 21.240 Atomic orbital electron populations 1.21850 0.92675 1.02125 1.02972 1.21813 0.96709 0.99602 0.92121 0.89303 1.22364 0.99146 0.95987 0.97658 1.23106 0.98345 0.97284 0.91108 1.65035 1.33651 1.22255 1.01638 1.22309 0.92627 0.93524 1.00998 1.21102 0.88445 0.79407 0.81758 1.90637 1.63104 1.60083 1.31232 1.48092 1.20707 1.30986 1.33504 1.18775 0.79863 0.92446 0.94860 1.21757 0.92890 1.20080 1.22950 0.93128 1.25720 0.94826 0.99455 0.98761 1.70037 0.98563 1.43375 1.44578 0.85505 0.78227 0.79014 0.78876 1.19381 1.19754 1.20999 1.21463 0.97043 0.98335 0.84066 1.19803 1.00231 1.01332 0.86407 1.29093 0.92312 0.92113 0.93493 1.81230 1.11728 1.10922 1.12639 1.22900 0.90562 0.96107 0.95028 0.92220 1.22153 0.99111 0.92712 0.84521 1.86332 1.89611 1.39008 1.24724 0.92912 0.91179 0.91346 0.91346 0.89662 0.92699 0.94251 0.91500 0.84524 0.94822 0.97970 0.92578 0.89721 0.88513 0.84941 0.86091 0.93448 0.90813 0.75402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.90 71.98 0.64 -0.97 16 2 C -0.08 -1.37 3.21 -9.90 -0.03 -1.40 16 3 H 0.09 1.34 7.86 -2.39 -0.02 1.32 16 4 C -0.11 -2.34 6.65 31.49 0.21 -2.13 16 5 C 0.03 0.85 5.92 86.45 0.51 1.37 16 6 N -0.50 -14.21 4.66 -861.23 -4.01 -18.23 16 7 C 0.04 1.05 3.81 85.56 0.33 1.38 16 8 C 0.50 20.02 7.52 87.66 0.66 20.68 16 9 O -0.57 -28.85 14.80 -3.03 -0.04 -28.89 16 10 N -0.60 -23.22 2.46 -826.13 -2.03 -25.25 16 11 C 0.26 13.15 5.16 85.63 0.44 13.60 16 12 C -0.54 -29.89 9.39 25.60 0.24 -29.65 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 14 C 0.01 0.64 5.46 84.65 0.46 1.11 16 15 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 16 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 C 0.12 3.17 5.17 86.38 0.45 3.61 16 21 C -0.04 -0.76 6.03 28.79 0.17 -0.59 16 22 C 0.25 5.84 15.43 89.44 1.38 7.22 16 23 N -0.49 -14.13 18.54 20.01 0.37 -13.76 16 24 C 0.06 1.24 2.20 45.06 0.10 1.33 16 25 H 0.06 1.18 7.72 -2.39 -0.02 1.17 16 26 C 0.09 1.49 6.59 71.98 0.47 1.97 16 27 O -0.59 -9.48 11.38 -148.98 -1.70 -11.17 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.08 1.45 7.71 -2.39 -0.02 1.44 16 33 H 0.05 2.03 7.24 -2.39 -0.02 2.01 16 34 H 0.04 1.09 7.76 -2.39 -0.02 1.07 16 35 H 0.07 1.77 7.03 -2.39 -0.02 1.75 16 36 H 0.14 3.38 4.81 -2.39 -0.01 3.36 16 37 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 38 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 39 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.08 2.47 8.07 -2.39 -0.02 2.46 16 41 H 0.10 2.20 6.44 -2.38 -0.02 2.18 16 42 H 0.13 2.25 7.22 -2.39 -0.02 2.24 16 43 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.40 3.05 9.12 -74.06 -0.68 2.38 16 Total: -1.00 -76.71 376.98 1.24 -75.47 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.31 Total: 12.13 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 6.03 Total: 17.52 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -5.39 Total: -111.54 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.74 Total: -40.07 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -76.71 1.24 -75.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189727694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.907 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds