Wall clock time and date at job start Tue Mar 31 2020 05:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.90984 * 2 1 4 4 C 1.55339 * 109.91768 * 238.89250 * 2 1 3 5 5 C 1.53669 * 101.77618 * 218.19575 * 4 2 1 6 6 H 1.08996 * 111.10569 * 280.71295 * 5 4 2 7 7 C 1.51933 * 115.22843 * 153.34573 * 5 4 2 8 8 C 1.53707 * 107.34292 * 184.27286 * 7 5 4 9 9 C 1.52739 * 111.40476 * 58.08394 * 8 7 5 10 10 C 1.53783 * 111.42346 * 305.21259 * 9 8 7 11 11 C 1.51423 * 107.35250 * 57.26812 * 10 9 8 12 12 H 1.09001 * 108.70681 * 53.70480 * 11 10 9 13 13 N 1.45954 * 118.53050 * 178.34861 * 11 10 9 14 14 C 1.34778 * 125.98336 * 329.38053 * 13 11 10 15 15 O 1.21592 * 120.00025 * 359.15579 * 14 13 11 16 16 N 1.34779 * 120.00110 * 179.15495 * 14 13 11 17 17 C 1.46499 * 119.99994 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47414 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99423 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00132 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99682 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00122 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00171 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00093 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46888 * 60.00093 * 25 23 21 27 27 H 1.48495 * 109.47033 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46831 * 300.00461 * 25 23 21 29 29 H 1.08995 * 109.47345 * 181.11190 * 1 2 3 30 30 H 1.09000 * 109.46611 * 301.11197 * 1 2 3 31 31 H 1.08999 * 109.47325 * 61.10744 * 1 2 3 32 32 H 1.08987 * 110.96923 * 100.06994 * 4 2 1 33 33 H 1.09004 * 110.99612 * 336.32622 * 4 2 1 34 34 H 1.09002 * 109.89483 * 303.75510 * 7 5 4 35 35 H 1.08994 * 109.89473 * 64.79186 * 7 5 4 36 36 H 1.08998 * 109.07683 * 178.68307 * 8 7 5 37 37 H 1.08995 * 109.07176 * 297.64613 * 8 7 5 38 38 H 1.08999 * 109.07677 * 184.70753 * 9 8 7 39 39 H 1.08995 * 109.02359 * 65.67366 * 9 8 7 40 40 H 1.09003 * 109.87654 * 297.81265 * 10 9 8 41 41 H 1.08991 * 109.87845 * 176.73509 * 10 9 8 42 42 H 0.96995 * 119.99691 * 359.97438 * 16 14 13 43 43 H 1.09007 * 109.46942 * 299.99942 * 17 16 14 44 44 H 1.08999 * 109.47456 * 59.99550 * 17 16 14 45 45 H 0.96997 * 119.99997 * 359.97438 * 20 18 17 46 46 H 0.96999 * 120.00437 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0593 -0.7545 -1.2505 5 6 3.2776 -1.4952 -0.6775 6 1 4.1352 -0.8286 -0.5865 7 6 3.6571 -2.7754 -1.4024 8 6 4.8159 -3.4172 -0.6229 9 6 4.4242 -3.6994 0.8262 10 6 3.9086 -2.4308 1.5260 11 6 2.7377 -1.9132 0.7173 12 1 2.0147 -2.7194 0.5935 13 7 2.0350 -0.7245 1.1902 14 6 1.8892 -0.3502 2.4767 15 8 2.3540 -1.0369 3.3661 16 7 1.2282 0.7852 2.7775 17 6 1.0702 1.1923 4.1759 18 6 0.3005 2.4864 4.2385 19 8 -0.0792 3.0162 3.2156 20 7 0.0331 3.0545 5.4310 21 6 -0.6676 4.2315 5.4879 22 1 -1.0057 4.7033 4.5771 23 6 -0.9438 4.8169 6.7174 24 7 -0.5329 4.2427 7.8257 25 14 -1.8979 6.4210 6.7949 26 1 -3.2359 6.2313 6.1794 27 1 -2.0586 6.8334 8.2124 28 1 -1.1572 7.4738 6.0545 29 1 -0.3634 -1.0274 0.0199 30 1 -0.3632 0.5310 0.8799 31 1 -0.3634 0.4965 -0.8997 32 1 2.3594 -0.0548 -2.0302 33 1 1.3160 -1.4582 -1.6256 34 1 2.8049 -3.4547 -1.4262 35 1 3.9763 -2.5454 -2.4189 36 1 5.0959 -4.3528 -1.1069 37 1 5.6709 -2.7413 -0.6352 38 1 5.2949 -4.0745 1.3640 39 1 3.6417 -4.4580 0.8414 40 1 4.6974 -1.6791 1.5589 41 1 3.5827 -2.6720 2.5376 42 1 0.8578 1.3331 2.0680 43 1 0.5273 0.4195 4.7201 44 1 2.0526 1.3322 4.6268 45 1 0.3358 2.6302 6.2491 46 1 -0.7259 4.6511 8.6841 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358319086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:50 Heat of formation + Delta-G solvation = -80.596071 kcal Electronic energy + Delta-G solvation = -26285.344552 eV Core-core repulsion = 22594.992764 eV Total energy + Delta-G solvation = -3690.351788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88368 -38.91217 -37.91863 -36.03958 -34.39285 -33.59288 -32.36303 -31.36584 -30.74465 -29.75658 -27.27656 -26.23320 -24.55186 -22.84548 -21.87557 -21.33768 -20.37486 -19.64783 -19.34316 -18.09629 -17.45414 -16.38750 -15.71547 -15.45315 -15.11015 -14.81025 -14.67236 -14.50888 -14.35187 -14.08568 -13.86537 -13.70194 -13.47797 -13.15256 -12.86288 -12.58226 -12.27033 -12.12115 -12.09370 -11.85068 -11.73801 -11.61040 -11.36702 -11.09910 -11.09122 -11.01529 -10.76584 -10.55968 -10.49755 -10.30345 -10.24908 -9.61622 -9.60895 -8.83824 -8.59946 -8.35267 -8.08002 -6.49539 -3.91594 2.73343 3.14760 3.22300 3.26182 3.44669 3.77609 3.94281 4.13359 4.31174 4.42209 4.47242 4.76853 4.82550 4.91548 4.92687 5.05101 5.15566 5.18931 5.19774 5.27237 5.31981 5.34681 5.46903 5.49685 5.60798 5.68147 5.76647 5.84397 5.87690 5.93262 5.94503 5.98344 6.04196 6.06730 6.11235 6.18666 6.25590 6.27543 6.50276 6.84122 7.32744 7.47399 7.94222 8.25951 8.47498 8.88507 9.06397 9.41686 9.89743 10.67367 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.031381 B = 0.002729 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.031971 B =10259.508300 C =10947.329495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.127 3.873 3 H 0.077 0.923 4 C -0.118 4.118 5 C -0.107 4.107 6 H 0.085 0.915 7 C -0.105 4.105 8 C -0.121 4.121 9 C -0.116 4.116 10 C -0.120 4.120 11 C 0.158 3.842 12 H 0.062 0.938 13 N -0.629 5.629 14 C 0.724 3.276 15 O -0.593 6.593 16 N -0.724 5.724 17 C 0.127 3.873 18 C 0.429 3.571 19 O -0.598 6.598 20 N -0.549 5.549 21 C -0.305 4.305 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.895 5.895 25 Si 0.934 3.066 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.406 0.594 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -13.867 -17.203 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.127 4.127 6 H 0.103 0.897 7 C -0.143 4.143 8 C -0.158 4.158 9 C -0.154 4.154 10 C -0.158 4.158 11 C 0.054 3.946 12 H 0.080 0.920 13 N -0.368 5.368 14 C 0.426 3.574 15 O -0.472 6.472 16 N -0.383 5.383 17 C -0.001 4.001 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.184 5.184 21 C -0.434 4.434 22 H 0.122 0.878 23 C -0.177 4.177 24 N -0.535 5.535 25 Si 0.760 3.240 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.245 0.755 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.927 -13.895 -16.872 23.250 hybrid contribution -0.510 0.912 0.380 1.112 sum 7.417 -12.983 -16.492 22.261 Atomic orbital electron populations 1.22258 0.94594 1.02649 1.03120 1.22017 0.94489 0.96294 0.84809 0.90464 1.22569 0.97462 0.99449 0.96094 1.22279 0.97928 0.97080 0.95393 0.89708 1.21417 0.98677 0.95654 0.98584 1.21604 0.98149 1.00588 0.95496 1.21572 1.01018 0.97612 0.95177 1.21590 0.96605 0.96973 1.00612 1.21190 0.93663 0.87032 0.92739 0.92032 1.47500 1.58712 1.26991 1.03553 1.15406 0.79295 0.81369 0.81356 1.90866 1.55486 1.55539 1.45315 1.44938 1.59649 1.24471 1.09234 1.20785 1.00970 0.96164 0.82187 1.19768 0.86325 0.87476 0.84930 1.90482 1.58252 1.65750 1.33999 1.41779 1.48233 1.21925 1.06475 1.19673 1.30646 0.98682 0.94434 0.87763 1.25320 0.97860 0.99855 0.94680 1.69606 1.45728 1.40164 0.98040 0.85876 0.79848 0.81102 0.77156 1.19792 1.20862 1.19798 0.92126 0.91471 0.91153 0.90051 0.90268 0.91505 0.91473 0.92013 0.92091 0.91706 0.92111 0.91869 0.89233 0.75496 0.90061 0.90098 0.77016 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.14 37.16 0.34 -1.51 16 2 C 0.13 1.41 3.03 -65.75 -0.20 1.21 16 3 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 4 C -0.12 -0.95 6.09 -25.14 -0.15 -1.10 16 5 C -0.11 -0.93 2.60 -89.60 -0.23 -1.17 16 6 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 7 C -0.11 -0.73 5.61 -26.91 -0.15 -0.88 16 8 C -0.12 -0.86 5.86 -26.50 -0.16 -1.02 16 9 C -0.12 -1.00 5.83 -26.46 -0.15 -1.16 16 10 C -0.12 -1.41 5.09 -27.12 -0.14 -1.55 16 11 C 0.16 1.83 2.53 -67.81 -0.17 1.66 16 12 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 13 N -0.63 -8.69 3.01 -161.47 -0.49 -9.18 16 14 C 0.72 12.69 8.26 -86.91 -0.72 11.98 16 15 O -0.59 -11.91 14.54 5.28 0.08 -11.83 16 16 N -0.72 -13.07 5.19 -66.41 -0.34 -13.42 16 17 C 0.13 2.47 6.15 -5.19 -0.03 2.44 16 18 C 0.43 10.05 7.85 -10.99 -0.09 9.97 16 19 O -0.60 -15.48 15.24 5.55 0.08 -15.40 16 20 N -0.55 -13.81 5.29 -10.96 -0.06 -13.87 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 24 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 25 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.91 6.29 -51.93 -0.33 0.59 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.54 8.14 -51.94 -0.42 0.12 16 33 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 34 H 0.07 0.45 7.98 -51.93 -0.41 0.04 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.79 8.12 -51.93 -0.42 0.36 16 41 H 0.09 1.31 6.57 -51.93 -0.34 0.97 16 42 H 0.41 7.26 4.91 -40.82 -0.20 7.06 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.40 9.60 7.90 -40.82 -0.32 9.28 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -31.13 361.01 -9.10 -40.24 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -7.42 Total: 14.81 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -2.09 Total: 10.95 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.16 Total: -59.85 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: 0.16 Total: -27.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.13 -9.10 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.359 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds