Wall clock time and date at job start Tue Mar 31 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.89453 * 2 1 4 4 C 1.54483 * 109.90225 * 238.94184 * 2 1 3 5 5 C 1.55963 * 102.65494 * 217.66582 * 4 2 1 6 6 H 1.08995 * 112.78149 * 156.80973 * 5 4 2 7 7 C 1.53018 * 107.22895 * 281.10997 * 5 4 2 8 8 C 1.51355 * 111.47995 * 162.61044 * 7 5 4 9 9 C 1.53246 * 108.90254 * 298.78738 * 8 7 5 10 10 C 1.52868 * 108.44789 * 62.77615 * 9 8 7 11 11 C 1.51191 * 111.23741 * 300.76175 * 10 9 8 12 12 H 1.09003 * 108.58562 * 173.90187 * 11 10 9 13 13 N 1.46520 * 113.00747 * 293.63541 * 11 10 9 14 14 C 1.34782 * 126.02418 * 329.80031 * 13 11 10 15 15 O 1.21588 * 119.99573 * 359.97438 * 14 13 11 16 16 N 1.34773 * 120.00130 * 180.02562 * 14 13 11 17 17 C 1.46497 * 119.99871 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47362 * 179.97438 * 17 16 14 19 19 O 1.21296 * 119.99324 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00403 * 180.02562 * 18 17 16 21 21 C 1.37105 * 120.00080 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99480 * 359.97438 * 21 20 18 23 23 C 1.38944 * 119.99746 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00487 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99747 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46763 * 119.99918 * 25 23 21 28 28 H 1.48500 * 109.47185 * 239.99822 * 25 23 21 29 29 H 1.08997 * 109.47143 * 181.06467 * 1 2 3 30 30 H 1.09003 * 109.46849 * 301.06397 * 1 2 3 31 31 H 1.08994 * 109.46985 * 61.05954 * 1 2 3 32 32 H 1.08992 * 110.77838 * 99.37564 * 4 2 1 33 33 H 1.08995 * 110.77280 * 335.95157 * 4 2 1 34 34 H 1.08992 * 109.23091 * 283.77563 * 7 5 4 35 35 H 1.08995 * 109.23333 * 43.15868 * 7 5 4 36 36 H 1.08994 * 109.84334 * 178.74763 * 8 7 5 37 37 H 1.09002 * 109.13507 * 58.40769 * 8 7 5 38 38 H 1.09002 * 109.67762 * 303.02227 * 9 8 7 39 39 H 1.09004 * 109.67301 * 182.52277 * 9 8 7 40 40 H 1.08993 * 109.12907 * 61.21657 * 10 9 8 41 41 H 1.09004 * 109.12483 * 180.31144 * 10 9 8 42 42 H 0.96999 * 119.99863 * 359.97438 * 16 14 13 43 43 H 1.08998 * 109.47581 * 299.99828 * 17 16 14 44 44 H 1.09008 * 109.47147 * 60.00282 * 17 16 14 45 45 H 0.97000 * 120.00289 * 0.02562 * 20 18 17 46 46 H 0.96999 * 120.00688 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0559 -0.7494 -1.2443 5 6 3.3048 -1.5001 -0.6885 6 1 3.5716 -2.3735 -1.2835 7 6 4.4441 -0.4823 -0.6021 8 6 5.5569 -0.9713 0.2998 9 6 4.9991 -1.1703 1.7132 10 6 3.9242 -2.2560 1.6606 11 6 2.8048 -1.8732 0.7193 12 1 2.1212 -2.7176 0.6307 13 7 2.0354 -0.7164 1.1849 14 6 1.8262 -0.3689 2.4702 15 8 2.2963 -1.0429 3.3664 16 7 1.0951 0.7250 2.7622 17 6 0.8673 1.1024 4.1592 18 6 0.0273 2.3525 4.2114 19 8 -0.3448 2.8763 3.1827 20 7 -0.3104 2.8883 5.4010 21 6 -1.0750 4.0254 5.4484 22 1 -1.4064 4.4918 4.5324 23 6 -1.4227 4.5781 6.6749 24 7 -1.0191 4.0108 7.7894 25 14 -2.4639 6.1277 6.7395 26 1 -2.7864 6.5654 5.3576 27 1 -3.7227 5.8478 7.4759 28 1 -1.7110 7.2013 7.4363 29 1 -0.3633 -1.0275 0.0191 30 1 -0.3633 0.5303 0.8803 31 1 -0.3633 0.4973 -0.8993 32 1 2.3436 -0.0465 -2.0261 33 1 1.3124 -1.4561 -1.6128 34 1 4.8391 -0.2998 -1.6015 35 1 4.0607 0.4519 -0.1921 36 1 6.3625 -0.2376 0.3245 37 1 5.9349 -1.9200 -0.0813 38 1 4.5618 -0.2378 2.0699 39 1 5.8008 -1.4798 2.3838 40 1 4.3745 -3.1882 1.3196 41 1 3.5156 -2.4028 2.6604 42 1 0.7198 1.2625 2.0472 43 1 0.3483 0.2938 4.6741 44 1 1.8247 1.2878 4.6463 45 1 -0.0125 2.4696 6.2237 46 1 -1.2621 4.3964 8.6456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358319087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:53 Heat of formation + Delta-G solvation = -75.507521 kcal Electronic energy + Delta-G solvation = -26797.808066 eV Core-core repulsion = 23107.676935 eV Total energy + Delta-G solvation = -3690.131132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.09144 -38.83325 -37.83819 -35.81846 -34.37077 -33.58100 -32.41657 -31.37530 -30.81253 -29.73260 -27.27429 -25.96611 -24.53626 -22.92144 -22.34662 -21.52974 -20.00088 -19.65315 -19.03103 -18.03797 -17.35618 -16.25117 -15.75967 -15.49901 -15.19291 -14.91881 -14.71431 -14.46476 -14.20691 -14.15801 -13.76796 -13.67073 -13.51816 -13.02005 -12.56694 -12.55313 -12.37126 -12.11094 -11.92652 -11.85043 -11.69509 -11.61524 -11.55626 -11.33747 -11.13402 -10.78333 -10.62560 -10.40297 -10.33200 -10.28979 -10.21123 -9.63414 -9.40741 -8.82544 -8.60339 -8.32687 -8.08372 -6.50170 -3.92115 2.75801 3.10930 3.22989 3.29701 3.44823 3.77072 3.99569 4.14412 4.31318 4.46077 4.54170 4.82258 4.89189 4.91897 5.06054 5.12317 5.16773 5.18738 5.30366 5.33088 5.40077 5.48576 5.50505 5.56472 5.63914 5.75738 5.81613 5.91329 5.92836 5.95929 6.03601 6.06420 6.10482 6.15681 6.17903 6.20689 6.26273 6.39860 6.62538 6.88181 7.32741 7.47345 7.94259 8.26895 8.46922 8.89346 9.06184 9.41338 9.89215 10.66847 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.003042 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.365766 B = 9202.637319 C = 9702.728404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 H 0.074 0.926 4 C -0.123 4.123 5 C -0.097 4.097 6 H 0.096 0.904 7 C -0.111 4.111 8 C -0.120 4.120 9 C -0.109 4.109 10 C -0.135 4.135 11 C 0.167 3.833 12 H 0.057 0.943 13 N -0.626 5.626 14 C 0.726 3.274 15 O -0.591 6.591 16 N -0.725 5.725 17 C 0.127 3.873 18 C 0.429 3.571 19 O -0.598 6.598 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.106 0.894 23 C 0.025 3.975 24 N -0.895 5.895 25 Si 0.932 3.068 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.406 0.594 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.377 -11.566 -16.321 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.022 3.978 3 H 0.092 0.908 4 C -0.161 4.161 5 C -0.116 4.116 6 H 0.114 0.886 7 C -0.148 4.148 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.173 4.173 11 C 0.063 3.937 12 H 0.075 0.925 13 N -0.365 5.365 14 C 0.428 3.572 15 O -0.470 6.470 16 N -0.384 5.384 17 C -0.001 4.001 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.184 5.184 21 C -0.433 4.433 22 H 0.123 0.877 23 C -0.177 4.177 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.246 0.754 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.389 -11.586 -16.012 21.880 hybrid contribution -0.614 0.862 0.328 1.108 sum 8.775 -10.724 -15.683 20.928 Atomic orbital electron populations 1.22305 0.94691 1.02690 1.03179 1.21696 0.94375 0.96436 0.85328 0.90809 1.22955 0.97342 0.99526 0.96299 1.22433 0.94975 0.98663 0.95567 0.88564 1.21242 0.95377 0.98738 0.99489 1.21309 0.97514 1.00956 0.95927 1.21412 0.97736 0.99658 0.95882 1.21550 0.95339 0.97925 1.02470 1.20820 0.92676 0.87507 0.92697 0.92458 1.47414 1.55642 1.30086 1.03339 1.15335 0.79374 0.81179 0.81309 1.90811 1.56355 1.54898 1.44931 1.45027 1.56070 1.28235 1.09116 1.20778 1.00322 0.96732 0.82262 1.19780 0.86358 0.87400 0.84969 1.90486 1.59913 1.64592 1.33481 1.41792 1.45554 1.24722 1.06379 1.19773 1.27242 1.01928 0.94391 0.87659 1.25318 0.98107 0.99646 0.94669 1.69620 1.45394 1.40637 0.97842 0.85767 0.79094 0.80642 0.78637 1.19151 1.20632 1.20623 0.92093 0.91333 0.91219 0.90000 0.90454 0.92104 0.91864 0.92210 0.92250 0.91992 0.92288 0.92019 0.87953 0.75407 0.90072 0.90121 0.77030 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.05 37.16 0.34 -1.55 16 2 C 0.13 1.37 2.33 -66.66 -0.16 1.21 16 3 H 0.07 0.84 7.86 -51.93 -0.41 0.44 16 4 C -0.12 -0.98 5.86 -24.37 -0.14 -1.12 16 5 C -0.10 -0.81 3.66 -88.51 -0.32 -1.14 16 6 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 7 C -0.11 -0.97 4.84 -27.55 -0.13 -1.11 16 8 C -0.12 -1.10 5.88 -27.43 -0.16 -1.26 16 9 C -0.11 -1.28 5.87 -26.67 -0.16 -1.44 16 10 C -0.14 -1.61 4.82 -27.71 -0.13 -1.74 16 11 C 0.17 1.88 2.85 -68.32 -0.19 1.68 16 12 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 13 N -0.63 -8.32 2.75 -163.12 -0.45 -8.77 16 14 C 0.73 12.31 7.56 -86.92 -0.66 11.65 16 15 O -0.59 -11.40 13.84 5.29 0.07 -11.32 16 16 N -0.73 -12.85 5.12 -66.41 -0.34 -13.19 16 17 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 18 C 0.43 9.99 7.85 -10.99 -0.09 9.90 16 19 O -0.60 -15.41 15.24 5.54 0.08 -15.33 16 20 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 22 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 24 N -0.89 -24.02 13.05 55.50 0.72 -23.29 16 25 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.95 5.86 -51.93 -0.30 0.64 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.55 7.99 -51.93 -0.41 0.13 16 33 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.66 6.99 -51.93 -0.36 0.30 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.89 7.50 -51.93 -0.39 0.50 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.54 5.64 -51.93 -0.29 1.25 16 42 H 0.41 7.18 4.60 -40.82 -0.19 6.99 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 45 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -30.59 355.30 -8.97 -39.56 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -7.25 Total: 15.59 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -2.08 Total: 9.63 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.12 Total: -59.06 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: 0.16 Total: -26.65 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.59 -8.97 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.945 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds