Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21276 * 120.00511 * 2 1 4 4 N 1.34783 * 119.99679 * 180.02562 * 2 1 3 5 5 C 1.47588 * 134.49053 * 179.97438 * 4 2 1 6 6 C 1.53940 * 86.11472 * 155.35917 * 5 4 2 7 7 C 1.50697 * 113.74462 * 137.95135 * 6 5 4 8 8 O 1.21282 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00471 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00303 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.49671 * 34.93677 * 10 9 7 12 12 C 1.53191 * 109.52931 * 274.85925 * 10 9 7 13 13 N 1.46921 * 108.77983 * 185.39701 * 12 10 9 14 14 C 1.36944 * 120.62742 * 233.87964 * 13 12 10 15 15 H 1.08002 * 119.99390 * 152.40627 * 14 13 12 16 16 C 1.38805 * 120.00237 * 332.41030 * 14 13 12 17 17 N 1.31614 * 120.00198 * 159.47706 * 16 14 13 18 18 Si 1.86803 * 120.00215 * 339.47446 * 16 14 13 19 19 H 1.48500 * 109.47214 * 93.01176 * 18 16 14 20 20 H 1.48499 * 109.47277 * 213.01647 * 18 16 14 21 21 H 1.48503 * 109.46657 * 333.01819 * 18 16 14 22 22 C 1.46926 * 118.74143 * 53.60785 * 13 12 10 23 23 C 1.53199 * 108.77108 * 306.39143 * 22 13 12 24 24 C 1.53038 * 109.31420 * 54.63602 * 23 22 13 25 25 H 1.08999 * 109.46080 * 58.65169 * 24 23 22 26 26 C 1.52998 * 109.46110 * 178.61116 * 24 23 22 27 27 C 1.47573 * 134.49595 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.47526 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47200 * 299.99584 * 1 2 3 30 30 H 1.09008 * 109.47524 * 59.99473 * 1 2 3 31 31 H 1.08995 * 113.76686 * 41.05964 * 5 4 2 32 32 H 1.08997 * 113.86861 * 269.67193 * 5 4 2 33 33 H 1.09001 * 113.74428 * 269.15212 * 6 5 4 34 34 H 0.96998 * 120.00152 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.58703 * 65.60140 * 12 10 9 36 36 H 1.09004 * 109.58239 * 305.18419 * 12 10 9 37 37 H 0.96997 * 120.00447 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.58928 * 66.17372 * 22 13 12 39 39 H 1.08996 * 109.58553 * 186.46665 * 22 13 12 40 40 H 1.09003 * 109.49488 * 174.58571 * 23 22 13 41 41 H 1.08998 * 109.49534 * 294.68075 * 23 22 13 42 42 H 1.08999 * 109.47024 * 60.00305 * 26 24 23 43 43 H 1.09005 * 109.46730 * 179.97438 * 26 24 23 44 44 H 1.08995 * 109.47072 * 300.00020 * 26 24 23 45 45 H 1.09005 * 113.77081 * 90.33420 * 27 4 2 46 46 H 1.09007 * 113.76968 * 318.94404 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6097 -1.5367 -0.0012 6 6 3.1595 -2.8623 0.6391 7 6 3.8590 -4.0744 0.0801 8 8 4.6908 -3.9456 -0.7931 9 7 3.5611 -5.3014 0.5512 10 6 4.2416 -6.4797 0.0082 11 1 5.2718 -6.2233 -0.2388 12 6 3.5158 -6.9534 -1.2550 13 7 4.1307 -8.2071 -1.7118 14 6 4.5871 -8.3327 -2.9968 15 1 5.3955 -9.0137 -3.2186 16 6 4.0108 -7.5847 -4.0142 17 7 4.6685 -7.3828 -5.1362 18 14 2.3015 -6.8648 -3.7911 19 1 2.4121 -5.4818 -3.2617 20 1 1.6004 -6.8393 -5.0999 21 1 1.5333 -7.7011 -2.8342 22 6 4.2523 -9.3215 -0.7620 23 6 4.9699 -8.8213 0.4957 24 6 4.2300 -7.6014 1.0493 25 1 3.1996 -7.8744 1.2775 26 6 4.9238 -7.1200 2.3251 27 6 1.7862 -2.5893 -0.0007 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.2234 -0.9185 0.6540 32 1 4.0349 -1.6524 -0.9981 33 1 3.1497 -2.8423 1.7288 34 1 2.8961 -5.4045 1.2498 35 1 3.6067 -6.1966 -2.0342 36 1 2.4631 -7.1238 -1.0293 37 1 4.2659 -6.8598 -5.8470 38 1 3.2597 -9.6849 -0.4961 39 1 4.8272 -10.1281 -1.2168 40 1 4.9815 -9.6114 1.2465 41 1 5.9933 -8.5428 0.2441 42 1 5.9544 -6.8475 2.0974 43 1 4.3971 -6.2508 2.7192 44 1 4.9145 -7.9183 3.0671 45 1 1.6739 -3.0140 -0.9983 46 1 0.9441 -2.8117 0.6548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965951644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = -13.996188 kcal Electronic energy + Delta-G solvation = -26764.179253 eV Core-core repulsion = 23076.715452 eV Total energy + Delta-G solvation = -3687.463800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94018 -39.49775 -38.23392 -37.14880 -34.59500 -33.29846 -31.44973 -31.36941 -29.77842 -28.61569 -27.59298 -26.41276 -24.20366 -23.86172 -22.34150 -21.11467 -20.26208 -19.45231 -19.19266 -17.60547 -17.22670 -16.89497 -16.18481 -15.77685 -15.53737 -15.13276 -14.88961 -14.40972 -14.05330 -13.81251 -13.52851 -13.41216 -13.35248 -13.14965 -12.89257 -12.72639 -12.66724 -12.39059 -12.36452 -12.11315 -12.00686 -11.90157 -11.46336 -11.25875 -10.91221 -10.74336 -10.57902 -10.30883 -10.20729 -10.09473 -9.78415 -9.64637 -9.46234 -8.96384 -8.93215 -8.53970 -6.99478 -5.94692 -3.31411 2.36537 2.52334 2.64639 3.26447 3.32332 3.44059 3.47690 4.01221 4.17220 4.52737 4.59217 4.69729 4.85563 4.90338 4.93455 4.99403 5.04355 5.10277 5.12803 5.21593 5.24943 5.37140 5.42339 5.43486 5.60676 5.70161 5.77758 5.79166 5.84400 5.87943 5.98389 6.06670 6.22763 6.27012 6.45847 6.49845 6.56996 6.60864 6.73933 6.90553 7.40220 7.62664 7.90420 7.95262 8.33087 8.35440 8.92712 9.71718 10.07138 11.21183 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.004478 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.192489 B = 6251.715556 C = 7559.691206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.534 3.466 3 O -0.548 6.548 4 N -0.647 5.647 5 C 0.128 3.872 6 C -0.150 4.150 7 C 0.516 3.484 8 O -0.520 6.520 9 N -0.719 5.719 10 C 0.131 3.869 11 H 0.092 0.908 12 C 0.121 3.879 13 N -0.601 5.601 14 C -0.264 4.264 15 H 0.087 0.913 16 C 0.028 3.972 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.272 1.272 22 C 0.145 3.855 23 C -0.128 4.128 24 C -0.092 4.092 25 H 0.068 0.932 26 C -0.144 4.144 27 C 0.117 3.883 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.395 0.605 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.023 0.977 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.298 5.652 17.718 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.325 3.675 3 O -0.426 6.426 4 N -0.383 5.383 5 C 0.006 3.994 6 C -0.173 4.173 7 C 0.300 3.700 8 O -0.395 6.395 9 N -0.370 5.370 10 C 0.025 3.975 11 H 0.110 0.890 12 C -0.006 4.006 13 N -0.325 5.325 14 C -0.393 4.393 15 H 0.104 0.896 16 C -0.171 4.171 17 N -0.546 5.546 18 Si 0.712 3.288 19 H -0.216 1.216 20 H -0.232 1.232 21 H -0.197 1.197 22 C 0.019 3.981 23 C -0.167 4.167 24 C -0.111 4.111 25 H 0.086 0.914 26 C -0.201 4.201 27 C -0.006 4.006 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.228 0.772 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.113 0.887 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.467 6.549 16.867 19.574 hybrid contribution -1.375 0.332 0.327 1.452 sum -8.842 6.881 17.194 20.523 Atomic orbital electron populations 1.21815 0.91242 1.04302 1.05261 1.20506 0.90233 0.81636 0.75124 1.90730 1.70795 1.30423 1.50645 1.50104 1.09271 1.05338 1.73618 1.23059 0.83272 0.90614 1.02469 1.23358 0.97111 0.94308 1.02477 1.20109 0.83074 0.84034 0.82765 1.90808 1.32943 1.85823 1.29921 1.46118 1.43334 1.06393 1.41202 1.21833 0.98548 0.82996 0.94108 0.88965 1.21692 0.94303 0.89801 0.94846 1.44277 1.71297 1.07495 1.09396 1.18896 1.13435 1.25417 0.81504 0.89577 1.25256 0.97966 0.98642 0.95245 1.69825 1.36831 1.40937 1.06991 0.86949 0.87207 0.78620 0.76036 1.21586 1.23171 1.19678 1.20989 0.97132 0.90733 0.89214 1.22078 1.00308 0.96003 0.98328 1.21300 0.99978 0.95528 0.94278 0.91352 1.21836 1.00841 1.00431 0.97006 1.23172 0.96253 0.79418 1.01789 0.90587 0.88714 0.88575 0.89392 0.87817 0.85732 0.77170 0.90329 0.95882 0.92728 0.95921 0.91616 0.92127 0.91611 0.92702 0.93145 0.92894 0.88675 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.34 36.00 0.37 -0.90 16 2 C 0.53 6.58 8.17 -10.99 -0.09 6.49 16 3 O -0.55 -9.15 17.83 5.56 0.10 -9.05 16 4 N -0.65 -7.33 3.61 -178.45 -0.64 -7.97 16 5 C 0.13 1.54 8.18 -2.97 -0.02 1.52 16 6 C -0.15 -1.49 4.34 -90.85 -0.39 -1.88 16 7 C 0.52 7.34 7.33 -10.99 -0.08 7.26 16 8 O -0.52 -10.25 15.56 5.56 0.09 -10.16 16 9 N -0.72 -9.26 4.37 -53.69 -0.23 -9.49 16 10 C 0.13 2.18 2.06 -67.81 -0.14 2.04 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 12 C 0.12 2.56 3.78 -3.71 -0.01 2.54 16 13 N -0.60 -13.96 2.77 -172.32 -0.48 -14.44 16 14 C -0.26 -7.40 10.03 -15.06 -0.15 -7.55 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 16 C 0.03 0.83 5.23 -17.44 -0.09 0.74 16 17 N -0.90 -28.18 13.97 55.49 0.78 -27.40 16 18 Si 0.88 22.54 24.35 -169.99 -4.14 18.40 16 19 H -0.29 -7.25 6.63 56.52 0.37 -6.88 16 20 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 21 H -0.27 -6.67 6.63 56.52 0.37 -6.30 16 22 C 0.15 2.68 6.52 -3.71 -0.02 2.66 16 23 C -0.13 -1.88 5.36 -26.61 -0.14 -2.03 16 24 C -0.09 -1.22 2.27 -90.58 -0.21 -1.43 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 26 C -0.14 -1.54 9.02 37.16 0.34 -1.20 16 27 C 0.12 1.06 7.70 -2.98 -0.02 1.03 16 28 H 0.08 0.44 7.21 -51.93 -0.37 0.06 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 1.47 7.41 -51.93 -0.38 1.08 16 33 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.39 3.53 8.31 -40.82 -0.34 3.20 16 35 H 0.08 1.96 4.49 -51.93 -0.23 1.73 16 36 H 0.02 0.48 7.09 -51.93 -0.37 0.11 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.46 7.35 -51.93 -0.38 0.08 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 46 H 0.09 0.52 7.96 -51.93 -0.41 0.11 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -36.83 364.36 -7.28 -44.10 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.56 Total: 1.24 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -0.67 Total: 9.28 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.58 Total: -59.31 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.19 Total: -19.21 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.14 Total: 18.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.83 -7.28 -44.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965951644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.108 kcal (2) G-P(sol) polarization free energy of solvation -36.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds