Wall clock time and date at job start Tue Mar 31 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21276 * 120.00511 * 2 1 4 4 N 1.34783 * 119.99679 * 180.02562 * 2 1 3 5 5 C 1.47588 * 134.49053 * 179.97438 * 4 2 1 6 6 C 1.53940 * 86.11472 * 155.35917 * 5 4 2 7 7 C 1.50697 * 113.74462 * 137.95135 * 6 5 4 8 8 O 1.21282 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00471 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00303 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.49671 * 34.93677 * 10 9 7 12 12 C 1.53191 * 109.52931 * 274.85925 * 10 9 7 13 13 N 1.46921 * 108.77983 * 185.39701 * 12 10 9 14 14 C 1.36944 * 120.62742 * 233.87964 * 13 12 10 15 15 H 1.08002 * 119.99390 * 152.40627 * 14 13 12 16 16 C 1.38805 * 120.00237 * 332.41030 * 14 13 12 17 17 N 1.31614 * 120.00198 * 159.47706 * 16 14 13 18 18 Si 1.86803 * 120.00215 * 339.47446 * 16 14 13 19 19 H 1.48500 * 109.47214 * 93.01176 * 18 16 14 20 20 H 1.48499 * 109.47277 * 213.01647 * 18 16 14 21 21 H 1.48503 * 109.46657 * 333.01819 * 18 16 14 22 22 C 1.46926 * 118.74143 * 53.60785 * 13 12 10 23 23 C 1.53199 * 108.77108 * 306.39143 * 22 13 12 24 24 C 1.53038 * 109.31420 * 54.63602 * 23 22 13 25 25 H 1.08999 * 109.46080 * 58.65169 * 24 23 22 26 26 C 1.52998 * 109.46110 * 178.61116 * 24 23 22 27 27 C 1.47573 * 134.49595 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.47526 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47200 * 299.99584 * 1 2 3 30 30 H 1.09008 * 109.47524 * 59.99473 * 1 2 3 31 31 H 1.08995 * 113.76686 * 41.05964 * 5 4 2 32 32 H 1.08997 * 113.86861 * 269.67193 * 5 4 2 33 33 H 1.09001 * 113.74428 * 269.15212 * 6 5 4 34 34 H 0.96998 * 120.00152 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.58703 * 65.60140 * 12 10 9 36 36 H 1.09004 * 109.58239 * 305.18419 * 12 10 9 37 37 H 0.96997 * 120.00447 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.58928 * 66.17372 * 22 13 12 39 39 H 1.08996 * 109.58553 * 186.46665 * 22 13 12 40 40 H 1.09003 * 109.49488 * 174.58571 * 23 22 13 41 41 H 1.08998 * 109.49534 * 294.68075 * 23 22 13 42 42 H 1.08999 * 109.47024 * 60.00305 * 26 24 23 43 43 H 1.09005 * 109.46730 * 179.97438 * 26 24 23 44 44 H 1.08995 * 109.47072 * 300.00020 * 26 24 23 45 45 H 1.09005 * 113.77081 * 90.33420 * 27 4 2 46 46 H 1.09007 * 113.76968 * 318.94404 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6097 -1.5367 -0.0012 6 6 3.1595 -2.8623 0.6391 7 6 3.8590 -4.0744 0.0801 8 8 4.6908 -3.9456 -0.7931 9 7 3.5611 -5.3014 0.5512 10 6 4.2416 -6.4797 0.0082 11 1 5.2718 -6.2233 -0.2388 12 6 3.5158 -6.9534 -1.2550 13 7 4.1307 -8.2071 -1.7118 14 6 4.5871 -8.3327 -2.9968 15 1 5.3955 -9.0137 -3.2186 16 6 4.0108 -7.5847 -4.0142 17 7 4.6685 -7.3828 -5.1362 18 14 2.3015 -6.8648 -3.7911 19 1 2.4121 -5.4818 -3.2617 20 1 1.6004 -6.8393 -5.0999 21 1 1.5333 -7.7011 -2.8342 22 6 4.2523 -9.3215 -0.7620 23 6 4.9699 -8.8213 0.4957 24 6 4.2300 -7.6014 1.0493 25 1 3.1996 -7.8744 1.2775 26 6 4.9238 -7.1200 2.3251 27 6 1.7862 -2.5893 -0.0007 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.2234 -0.9185 0.6540 32 1 4.0349 -1.6524 -0.9981 33 1 3.1497 -2.8423 1.7288 34 1 2.8961 -5.4045 1.2498 35 1 3.6067 -6.1966 -2.0342 36 1 2.4631 -7.1238 -1.0293 37 1 4.2659 -6.8598 -5.8470 38 1 3.2597 -9.6849 -0.4961 39 1 4.8272 -10.1281 -1.2168 40 1 4.9815 -9.6114 1.2465 41 1 5.9933 -8.5428 0.2441 42 1 5.9544 -6.8475 2.0974 43 1 4.3971 -6.2508 2.7192 44 1 4.9145 -7.9183 3.0671 45 1 1.6739 -3.0140 -0.9983 46 1 0.9441 -2.8117 0.6548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965951644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:26 Heat of formation + Delta-G solvation = -43.104152 kcal Electronic energy + Delta-G solvation = -26765.441469 eV Core-core repulsion = 23076.715452 eV Total energy + Delta-G solvation = -3688.726016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.93677 -40.66490 -39.47605 -38.30109 -36.17895 -34.70893 -33.31703 -32.32777 -31.01076 -29.56606 -29.00711 -27.23692 -25.75090 -25.23274 -23.58432 -22.58230 -21.51535 -20.69076 -20.05866 -18.92490 -18.58589 -18.06714 -17.51948 -17.01848 -16.77711 -16.36339 -16.14729 -15.88422 -15.33977 -15.15471 -15.10602 -14.63667 -14.54808 -14.23743 -14.04982 -13.78330 -13.72798 -13.49199 -13.44704 -13.28039 -13.25080 -12.94872 -12.85803 -12.52873 -12.30749 -12.21557 -12.08534 -11.72170 -11.64833 -11.46419 -11.24315 -11.18553 -10.80415 -10.74879 -10.12254 -9.91337 -8.92068 -8.20125 -5.51453 1.24549 1.32996 1.43611 1.45553 1.53558 1.65479 2.19098 2.39443 3.04676 3.12566 3.38762 3.42077 3.72586 3.80501 3.91422 4.00367 4.05106 4.11609 4.27269 4.35507 4.38904 4.42309 4.45911 4.52149 4.60055 4.60510 4.68117 4.70454 4.85274 4.89762 4.96072 4.98483 5.02929 5.06247 5.13514 5.21014 5.23050 5.45152 5.46492 5.62677 5.85132 6.09713 6.53489 6.61052 6.90231 6.99309 7.31021 7.61239 7.99133 8.99828 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.004478 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.192489 B = 6251.715556 C = 7559.691206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.525 3.475 3 O -0.604 6.604 4 N -0.646 5.646 5 C 0.111 3.889 6 C -0.126 4.126 7 C 0.513 3.487 8 O -0.585 6.585 9 N -0.700 5.700 10 C 0.143 3.857 11 H 0.049 0.951 12 C 0.119 3.881 13 N -0.618 5.618 14 C -0.250 4.250 15 H 0.050 0.950 16 C -0.039 4.039 17 N -0.959 5.959 18 Si 0.951 3.049 19 H -0.288 1.288 20 H -0.312 1.312 21 H -0.246 1.246 22 C 0.137 3.863 23 C -0.121 4.121 24 C -0.083 4.083 25 H 0.097 0.903 26 C -0.137 4.137 27 C 0.123 3.877 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.172 0.828 34 H 0.421 0.579 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.259 0.741 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 5.115 22.415 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.318 3.682 3 O -0.486 6.486 4 N -0.381 5.381 5 C -0.012 4.012 6 C -0.148 4.148 7 C 0.300 3.700 8 O -0.464 6.464 9 N -0.352 5.352 10 C 0.036 3.964 11 H 0.067 0.933 12 C -0.008 4.008 13 N -0.343 5.343 14 C -0.380 4.380 15 H 0.068 0.932 16 C -0.234 4.234 17 N -0.605 5.605 18 Si 0.780 3.220 19 H -0.216 1.216 20 H -0.241 1.241 21 H -0.169 1.169 22 C 0.013 3.987 23 C -0.160 4.160 24 C -0.102 4.102 25 H 0.115 0.885 26 C -0.194 4.194 27 C 0.001 3.999 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.189 0.811 34 H 0.260 0.740 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.137 5.955 21.671 25.082 hybrid contribution -0.114 0.432 -1.132 1.217 sum -11.251 6.387 20.539 24.274 Atomic orbital electron populations 1.21858 0.87165 1.06412 1.06232 1.21467 0.92112 0.80872 0.73757 1.90702 1.72257 1.32406 1.53195 1.50222 1.08828 1.06364 1.72734 1.23022 0.84354 0.92656 1.01174 1.23349 0.96631 0.90253 1.04559 1.20897 0.82139 0.85394 0.81601 1.90804 1.35953 1.86761 1.32891 1.45842 1.43315 1.04878 1.41202 1.21353 0.95797 0.85437 0.93840 0.93271 1.21684 0.95626 0.87837 0.95607 1.44423 1.71500 1.09970 1.08436 1.18873 1.11791 1.23329 0.84038 0.93193 1.25977 1.01898 1.00313 0.95172 1.69984 1.38630 1.43458 1.08393 0.85820 0.82182 0.78081 0.75885 1.21561 1.24075 1.16932 1.21246 0.98671 0.89151 0.89611 1.22004 0.98601 0.97960 0.97442 1.21286 1.01764 0.93105 0.94046 0.88487 1.21781 0.99652 1.02138 0.95819 1.23347 0.97281 0.77363 1.01934 0.87871 0.86993 0.88227 0.89052 0.91250 0.81089 0.74010 0.94742 0.93854 0.93214 0.93478 0.92909 0.88113 0.93944 0.94515 0.90945 0.90437 0.90529 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.34 71.23 0.74 -1.13 16 2 C 0.52 12.08 8.17 87.65 0.72 12.80 16 3 O -0.60 -20.23 17.83 -3.02 -0.05 -20.28 16 4 N -0.65 -13.38 3.61 -836.87 -3.02 -16.40 16 5 C 0.11 2.65 8.18 86.48 0.71 3.36 16 6 C -0.13 -2.11 4.34 -10.88 -0.05 -2.16 16 7 C 0.51 13.87 7.33 87.66 0.64 14.52 16 8 O -0.58 -24.00 15.56 -3.04 -0.05 -24.05 16 9 N -0.70 -15.75 4.37 -442.17 -1.93 -17.68 16 10 C 0.14 4.51 2.06 45.07 0.09 4.61 16 11 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 12 C 0.12 4.90 3.78 86.36 0.33 5.23 16 13 N -0.62 -28.74 2.77 -699.10 -1.93 -30.68 16 14 C -0.25 -14.63 10.03 84.03 0.84 -13.79 16 15 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 16 C -0.04 -2.38 5.23 84.86 0.44 -1.94 16 17 N -0.96 -63.29 13.97 21.65 0.30 -62.99 16 18 Si 0.95 48.01 24.35 68.60 1.67 49.68 16 19 H -0.29 -14.35 6.63 99.48 0.66 -13.69 16 20 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 21 H -0.25 -11.18 6.63 99.48 0.66 -10.52 16 22 C 0.14 4.84 6.52 86.36 0.56 5.40 16 23 C -0.12 -3.22 5.36 30.67 0.16 -3.06 16 24 C -0.08 -1.87 2.27 -10.77 -0.02 -1.89 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 26 C -0.14 -2.26 9.02 71.98 0.65 -1.61 16 27 C 0.12 1.74 7.70 86.48 0.67 2.41 16 28 H 0.10 0.65 7.21 -2.39 -0.02 0.63 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.13 7.41 -2.39 -0.02 2.11 16 33 H 0.17 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.42 5.07 8.31 -92.71 -0.77 4.30 16 35 H 0.03 1.74 4.49 -2.39 -0.01 1.73 16 36 H 0.04 1.62 7.09 -2.38 -0.02 1.61 16 37 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.90 7.35 -2.38 -0.02 0.88 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 1.43 8.09 -2.38 -0.02 1.41 16 46 H 0.15 0.61 7.96 -2.38 -0.02 0.59 16 Total: -1.00 -91.20 364.36 1.58 -89.62 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.11 Total: 10.04 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 6.48 Total: 22.74 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -6.58 Total: -127.75 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.10 Total: -44.33 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.67 Total: 49.68 kcal Total: -91.20 1.58 -89.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965951644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.520 kcal (2) G-P(sol) polarization free energy of solvation -91.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds