Wall clock time and date at job start Tue Mar 31 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.91719 * 2 1 4 4 C 1.55158 * 110.99953 * 236.09701 * 2 1 3 5 5 C 1.54326 * 102.94020 * 206.42188 * 4 2 1 6 6 N 1.47026 * 107.27221 * 22.19354 * 5 4 2 7 7 C 1.34769 * 125.65245 * 181.01931 * 6 5 4 8 8 O 1.21351 * 120.00464 * 180.02562 * 7 6 5 9 9 C 1.49453 * 119.99697 * 0.02766 * 7 6 5 10 10 O 1.21346 * 120.00246 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99983 * 179.97438 * 9 7 6 12 12 C 1.47744 * 125.82204 * 359.91237 * 11 9 7 13 13 C 1.54908 * 104.84434 * 155.82847 * 12 11 9 14 14 C 1.55157 * 101.58293 * 37.09198 * 13 12 11 15 15 H 1.09004 * 110.71925 * 82.86120 * 14 13 12 16 16 N 1.46493 * 110.72182 * 206.13988 * 14 13 12 17 17 C 1.46500 * 120.00429 * 54.97620 * 16 14 13 18 18 C 1.36940 * 119.99703 * 234.97336 * 16 14 13 19 19 H 1.08003 * 119.99939 * 23.44844 * 18 16 14 20 20 C 1.38816 * 120.00086 * 203.44476 * 18 16 14 21 21 N 1.31613 * 119.99679 * 14.54371 * 20 18 16 22 22 Si 1.86792 * 119.99929 * 194.54215 * 20 18 16 23 23 H 1.48498 * 109.47230 * 60.00421 * 22 20 18 24 24 H 1.48506 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47488 * 299.99889 * 22 20 18 26 26 C 1.47020 * 125.64938 * 180.02562 * 11 9 7 27 27 C 1.47429 * 108.69866 * 1.28883 * 6 5 4 28 28 H 1.09000 * 109.47131 * 183.90591 * 1 2 3 29 29 H 1.08999 * 109.46990 * 303.90063 * 1 2 3 30 30 H 1.08999 * 109.47286 * 63.89820 * 1 2 3 31 31 H 1.09005 * 110.71788 * 88.06667 * 4 2 1 32 32 H 1.08997 * 110.87380 * 324.85833 * 4 2 1 33 33 H 1.09003 * 109.88175 * 262.78206 * 5 4 2 34 34 H 1.08994 * 110.01294 * 141.68510 * 5 4 2 35 35 H 1.09004 * 110.29299 * 37.01905 * 12 11 9 36 36 H 1.09003 * 110.52986 * 274.75521 * 12 11 9 37 37 H 1.09002 * 111.00243 * 279.02222 * 13 12 11 38 38 H 1.09004 * 111.04054 * 155.18279 * 13 12 11 39 39 H 1.08999 * 109.47138 * 95.19063 * 17 16 14 40 40 H 1.09006 * 109.46968 * 215.19091 * 17 16 14 41 41 H 1.09002 * 109.46763 * 335.18461 * 17 16 14 42 42 H 0.97001 * 119.99894 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.88388 * 61.60836 * 26 11 9 44 44 H 1.09005 * 109.88000 * 300.59468 * 26 11 9 45 45 H 1.08997 * 110.36971 * 94.48339 * 27 6 5 46 46 H 1.09001 * 110.36196 * 216.80330 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0861 -0.8080 -1.2023 5 6 3.4674 -1.2742 -0.6961 6 7 3.4272 -1.2431 0.7733 7 6 4.4476 -1.5616 1.5940 8 8 4.3008 -1.4999 2.7970 9 6 5.7602 -1.9908 1.0224 10 8 5.9072 -2.0520 -0.1806 11 7 6.7809 -2.3088 1.8430 12 6 6.7453 -2.2772 3.3197 13 6 7.8472 -3.2709 3.7647 14 6 8.9415 -3.0229 2.6930 15 1 9.5499 -2.1576 2.9561 16 7 9.7777 -4.2134 2.5210 17 6 9.1597 -5.5029 2.2023 18 6 11.1370 -4.1209 2.6580 19 1 11.5678 -3.3204 3.2412 20 6 11.9615 -5.0560 2.0473 21 7 11.4783 -5.8505 1.1159 22 14 13.7564 -5.1866 2.5475 23 1 13.8448 -5.5195 3.9920 24 1 14.4156 -6.2533 1.7520 25 1 14.4361 -3.8905 2.2957 26 6 8.1191 -2.7439 1.4172 27 6 2.0836 -0.8119 1.2003 28 1 -0.3633 -1.0253 0.0700 29 1 -0.3633 0.5732 0.8530 30 1 -0.3634 0.4521 -0.9228 31 1 2.1921 -0.1699 -2.0797 32 1 1.4477 -1.6632 -1.4239 33 1 4.2425 -0.5997 -1.0600 34 1 3.6677 -2.2888 -1.0400 35 1 5.7705 -2.6046 3.6815 36 1 6.9679 -1.2750 3.6860 37 1 7.4861 -4.2986 3.7238 38 1 8.2144 -3.0273 4.7617 39 1 9.1771 -5.6574 1.1235 40 1 9.7144 -6.3028 2.6929 41 1 8.1278 -5.5080 2.5536 42 1 12.0545 -6.5037 0.6889 43 1 8.5963 -1.9571 0.8330 44 1 8.0410 -3.6529 0.8206 45 1 1.4524 -1.6781 1.3988 46 1 2.1516 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972697726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:20 Heat of formation + Delta-G solvation = -28.945406 kcal Electronic energy + Delta-G solvation = -26259.855241 eV Core-core repulsion = 22571.743194 eV Total energy + Delta-G solvation = -3688.112047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77172 -39.18379 -37.71333 -37.41521 -34.81181 -33.17194 -31.62828 -29.93707 -29.76443 -28.21687 -27.28950 -26.05155 -24.82199 -23.30051 -22.32881 -21.69611 -20.66131 -19.23896 -19.11229 -17.29550 -17.02188 -16.90792 -16.41992 -15.87959 -15.56595 -15.01793 -14.56075 -14.13055 -13.99979 -13.61463 -13.53575 -13.34832 -13.26967 -12.89899 -12.81434 -12.70180 -12.55970 -12.15727 -12.14071 -11.80364 -11.65781 -11.46628 -11.19956 -11.03630 -10.92672 -10.91569 -10.78551 -10.54141 -10.46696 -10.28382 -9.86741 -9.79913 -9.29921 -8.94068 -8.58120 -8.37023 -6.82013 -5.77261 -3.25380 1.56299 2.28664 3.33865 3.37340 3.42321 3.43392 3.47216 4.05635 4.28171 4.40791 4.45698 4.46265 4.96236 4.99166 5.07091 5.09228 5.23800 5.25882 5.32082 5.39354 5.44977 5.54649 5.57204 5.64352 5.68137 5.73182 5.76096 5.86669 5.89937 5.93592 6.03374 6.12621 6.33900 6.39698 6.46043 6.60164 6.80630 6.86876 7.08791 7.30508 7.52276 7.69021 7.72982 7.76804 8.16442 8.34239 9.16975 9.79554 10.29031 11.26844 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.036716 B = 0.002731 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.417624 B =10250.181906 C =10666.469456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.132 4.132 5 C 0.107 3.893 6 N -0.596 5.596 7 C 0.525 3.475 8 O -0.519 6.519 9 C 0.514 3.486 10 O -0.527 6.527 11 N -0.580 5.580 12 C 0.099 3.901 13 C -0.156 4.156 14 C 0.173 3.827 15 H 0.081 0.919 16 N -0.584 5.584 17 C 0.157 3.843 18 C -0.263 4.263 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.907 3.093 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.085 3.915 27 C 0.109 3.891 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.042 0.958 41 H 0.004 0.996 42 H 0.255 0.745 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.718 10.584 -1.168 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.105 0.895 4 C -0.170 4.170 5 C -0.015 4.015 6 N -0.331 5.331 7 C 0.308 3.692 8 O -0.395 6.395 9 C 0.296 3.704 10 O -0.404 6.404 11 N -0.313 5.313 12 C -0.023 4.023 13 C -0.196 4.196 14 C 0.062 3.938 15 H 0.099 0.901 16 N -0.304 5.304 17 C 0.013 3.987 18 C -0.393 4.393 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.737 3.263 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.208 1.208 26 C -0.039 4.039 27 C -0.013 4.013 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.556 10.387 -1.262 23.065 hybrid contribution 1.009 -0.159 0.045 1.022 sum -19.547 10.228 -1.218 22.095 Atomic orbital electron populations 1.21694 0.93494 1.02356 1.02267 1.22423 0.96338 0.99469 0.94393 0.89519 1.22823 0.95714 1.00354 0.98069 1.22188 0.97616 1.03163 0.78580 1.48252 1.11611 1.65284 1.07986 1.20005 0.84578 0.78535 0.86043 1.90709 1.82832 1.51957 1.14012 1.19526 0.84305 0.80253 0.86319 1.90735 1.82554 1.53195 1.13952 1.48471 1.12060 1.62519 1.08265 1.22680 1.01167 1.00061 0.78393 1.23413 0.96286 0.99380 1.00490 1.21391 0.90441 0.91661 0.90292 0.90133 1.43922 1.02835 1.02040 1.81616 1.20820 0.91910 0.86739 0.99253 1.19173 0.81260 1.12961 1.25868 0.91202 1.25071 0.98104 0.99863 0.96346 1.70064 1.35342 1.24038 1.25171 0.86300 0.84609 0.77400 0.77989 1.20980 1.21637 1.20844 1.23125 0.79816 1.00147 1.00833 1.22459 0.82246 0.98570 0.98047 0.92200 0.92203 0.91944 0.89781 0.90363 0.90248 0.90275 0.89052 0.91310 0.90471 0.90185 0.94879 0.93935 0.97751 0.93535 0.91693 0.90418 0.90891 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.31 37.16 0.35 -0.35 16 2 C -0.11 -0.72 3.66 -88.35 -0.32 -1.05 16 3 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -0.93 6.41 -24.89 -0.16 -1.09 16 5 C 0.11 1.15 5.49 -3.06 -0.02 1.13 16 6 N -0.60 -7.44 3.32 -170.88 -0.57 -8.01 16 7 C 0.52 8.12 7.88 -11.59 -0.09 8.03 16 8 O -0.52 -8.60 14.05 5.50 0.08 -8.53 16 9 C 0.51 8.97 7.88 -11.58 -0.09 8.88 16 10 O -0.53 -9.98 14.45 5.50 0.08 -9.90 16 11 N -0.58 -10.24 3.34 -170.76 -0.57 -10.81 16 12 C 0.10 1.56 6.09 -2.35 -0.01 1.54 16 13 C -0.16 -2.61 6.59 -24.58 -0.16 -2.77 16 14 C 0.17 3.46 3.44 -66.10 -0.23 3.23 16 15 H 0.08 1.58 7.94 -51.93 -0.41 1.17 16 16 N -0.58 -14.27 2.93 -171.38 -0.50 -14.77 16 17 C 0.16 3.82 7.75 59.85 0.46 4.28 16 18 C -0.26 -7.05 9.59 -15.06 -0.14 -7.20 16 19 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 20 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 21 N -0.90 -26.05 10.82 55.49 0.60 -25.45 16 22 Si 0.91 21.55 29.58 -169.99 -5.03 16.52 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.08 1.67 6.50 -3.06 -0.02 1.65 16 27 C 0.11 1.01 6.38 -2.41 -0.02 1.00 16 28 H 0.06 0.29 8.07 -51.93 -0.42 -0.13 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16 33 H 0.08 0.93 7.58 -51.93 -0.39 0.54 16 34 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 35 H 0.09 1.43 6.17 -51.93 -0.32 1.11 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.37 6.14 -51.93 -0.32 1.05 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.88 7.25 -51.93 -0.38 0.50 16 40 H 0.04 1.10 7.42 -51.93 -0.39 0.72 16 41 H 0.00 0.09 6.13 -51.93 -0.32 -0.23 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.08 1.72 7.06 -51.93 -0.37 1.36 16 45 H 0.07 0.64 7.99 -51.93 -0.41 0.22 16 46 H 0.08 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -31.07 360.52 -8.49 -39.55 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.47 Total: -1.39 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: -0.54 Total: 17.34 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -1.04 Total: -59.04 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.16 Total: -18.43 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.07 -8.49 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972697726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.608 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds