Wall clock time and date at job start Tue Mar 31 2020 03:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46829 * 2 1 4 4 N 1.46496 * 109.46952 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35009 * 90.00040 * 4 3 2 6 6 C 1.54480 * 105.47844 * 162.71821 * 5 4 3 7 7 H 1.09000 * 110.97238 * 267.30061 * 6 5 4 8 8 C 1.50700 * 110.97243 * 143.53243 * 6 5 4 9 9 O 1.21284 * 119.99729 * 0.02562 * 8 6 5 10 10 N 1.34772 * 119.99851 * 180.02562 * 8 6 5 11 11 C 1.46509 * 119.99876 * 180.02562 * 10 8 6 12 12 H 1.08994 * 110.64003 * 323.31755 * 11 10 8 13 13 C 1.55154 * 110.71922 * 199.97485 * 11 10 8 14 14 C 1.54908 * 101.58299 * 277.13836 * 13 11 10 15 15 N 1.47417 * 104.83369 * 322.99303 * 14 13 11 16 16 C 1.36939 * 125.64897 * 204.08896 * 15 14 13 17 17 H 1.07999 * 120.00028 * 169.98037 * 16 15 14 18 18 C 1.38811 * 120.00084 * 349.98832 * 16 15 14 19 19 N 1.31618 * 119.99809 * 350.41121 * 18 16 15 20 20 Si 1.86797 * 120.00039 * 170.42167 * 18 16 15 21 21 H 1.48499 * 109.47544 * 94.14000 * 20 18 16 22 22 H 1.48500 * 109.46792 * 214.13786 * 20 18 16 23 23 H 1.48504 * 109.47312 * 334.13516 * 20 18 16 24 24 C 1.47021 * 108.70610 * 24.12903 * 15 14 13 25 25 C 1.54636 * 101.76042 * 25.41885 * 6 5 4 26 26 C 1.34422 * 124.35343 * 269.70223 * 4 3 2 27 27 O 1.21285 * 124.93646 * 0.65359 * 26 4 3 28 28 H 1.09006 * 109.47328 * 299.99882 * 1 2 3 29 29 H 1.08999 * 109.47297 * 59.99920 * 1 2 3 30 30 H 1.09003 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47089 * 240.00019 * 2 1 3 32 32 H 1.09001 * 109.46855 * 119.99805 * 2 1 3 33 33 H 1.08997 * 109.47269 * 60.00130 * 3 2 1 34 34 H 1.08999 * 109.47246 * 300.00111 * 3 2 1 35 35 H 1.09008 * 110.24743 * 281.72010 * 5 4 3 36 36 H 1.08996 * 110.24924 * 43.71961 * 5 4 3 37 37 H 0.97000 * 120.00209 * 0.02562 * 10 8 6 38 38 H 1.09002 * 111.00779 * 35.21565 * 13 11 10 39 39 H 1.08998 * 111.00061 * 159.06811 * 13 11 10 40 40 H 1.09000 * 110.36791 * 204.15439 * 14 13 11 41 41 H 1.09006 * 110.36507 * 81.83404 * 14 13 11 42 42 H 0.97002 * 120.00124 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.88458 * 239.52754 * 24 15 14 44 44 H 1.08997 * 110.01809 * 118.42968 * 24 15 14 45 45 H 1.08997 * 110.49151 * 93.88131 * 25 6 5 46 46 H 1.09005 * 110.48227 * 216.52497 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3335 1.4424 -1.2107 6 6 5.7396 1.8848 -0.7484 7 1 5.8613 2.9634 -0.8474 8 6 6.8133 1.1508 -1.5096 9 8 6.5084 0.3376 -2.3561 10 7 8.1124 1.3981 -1.2495 11 6 9.1563 0.6849 -1.9899 12 1 8.8553 -0.3447 -2.1828 13 6 10.5037 0.7324 -1.2221 14 6 11.0550 2.1164 -1.6467 15 7 10.6580 2.2638 -3.0587 16 6 11.2787 3.0608 -3.9833 17 1 11.0169 2.9805 -5.0280 18 6 12.2445 3.9716 -3.5777 19 7 12.4312 4.2059 -2.2961 20 14 13.2790 4.8649 -4.8510 21 1 12.6556 6.1759 -5.1640 22 1 14.6461 5.0826 -4.3135 23 1 13.3578 4.0464 -6.0875 24 6 9.4847 1.4142 -3.3097 25 6 5.7294 1.4631 0.7393 26 6 4.2629 1.4485 1.1107 27 8 3.8336 1.4432 2.2450 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 4.3750 0.4409 -1.6392 36 1 3.9365 2.1490 -1.9394 37 1 8.3562 2.0482 -0.5722 38 1 10.3414 0.6902 -0.1450 39 1 11.1671 -0.0689 -1.5474 40 1 12.1408 2.1370 -1.5538 41 1 10.6067 2.9050 -1.0422 42 1 13.1063 4.8422 -2.0127 43 1 9.7136 0.6864 -4.0883 44 1 8.6375 2.0286 -3.6145 45 1 6.1627 0.4700 0.8574 46 1 6.2692 2.1906 1.3456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015772750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:57 Heat of formation + Delta-G solvation = -51.395677 kcal Electronic energy + Delta-G solvation = -25858.641337 eV Core-core repulsion = 22169.555773 eV Total energy + Delta-G solvation = -3689.085564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99486 -39.44013 -37.42068 -36.49207 -35.02673 -33.92138 -32.16705 -31.39666 -29.21428 -27.97724 -27.44348 -26.48693 -24.60668 -23.38355 -22.07176 -20.49460 -20.31381 -19.85344 -19.56911 -17.73883 -17.01527 -16.85520 -16.18350 -15.95026 -15.30461 -15.04312 -14.74388 -14.73255 -14.13718 -13.96788 -13.84603 -13.79792 -13.52329 -13.14417 -12.91823 -12.55668 -12.46608 -12.11059 -12.09379 -11.75884 -11.71595 -11.64206 -11.51653 -11.12004 -11.03018 -10.88786 -10.83505 -10.49624 -10.15318 -10.11641 -10.06390 -9.74313 -9.65522 -8.95301 -8.79544 -8.62565 -6.85688 -5.80493 -3.12243 2.36168 2.60321 2.71929 3.26838 3.36526 3.42828 3.44754 4.03254 4.13650 4.45907 4.58918 4.60840 4.64306 4.71858 4.93155 5.01007 5.09893 5.21939 5.25036 5.28806 5.34292 5.38809 5.42415 5.44819 5.51104 5.67380 5.67781 5.71313 5.77004 5.78242 5.91477 6.17200 6.25933 6.28701 6.39430 6.46269 6.67166 6.84944 6.95378 7.38568 7.47051 7.66939 7.71948 7.93776 8.20009 8.31153 9.14567 9.76188 10.42842 11.32963 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.002611 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.834815 B =10721.701941 C =10843.279528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.126 3.874 4 N -0.619 5.619 5 C 0.117 3.883 6 C -0.125 4.125 7 H 0.119 0.881 8 C 0.526 3.474 9 O -0.541 6.541 10 N -0.704 5.704 11 C 0.132 3.868 12 H 0.089 0.911 13 C -0.155 4.155 14 C 0.172 3.828 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.075 0.925 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.127 3.873 25 C -0.144 4.144 26 C 0.521 3.479 27 O -0.532 6.532 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.403 0.597 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.026 0.974 42 H 0.253 0.747 43 H 0.031 0.969 44 H 0.026 0.974 45 H 0.109 0.891 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.797 -6.508 5.831 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.353 5.353 5 C -0.006 4.006 6 C -0.147 4.147 7 H 0.137 0.863 8 C 0.311 3.689 9 O -0.418 6.418 10 N -0.354 5.354 11 C 0.027 3.973 12 H 0.107 0.893 13 C -0.194 4.194 14 C 0.047 3.953 15 N -0.329 5.329 16 C -0.356 4.356 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.001 3.999 25 C -0.185 4.185 26 C 0.309 3.691 27 O -0.409 6.409 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.237 0.763 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.128 0.872 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.143 -6.934 5.797 20.269 hybrid contribution 0.738 0.982 -0.454 1.309 sum -17.405 -5.952 5.344 19.155 Atomic orbital electron populations 1.21692 0.94959 1.02089 1.01949 1.21924 0.96276 0.97090 1.02863 1.21457 0.77637 0.97220 1.03229 1.48351 1.06335 1.73308 1.07331 1.22006 0.87868 1.03946 0.86781 1.22257 0.94567 1.02707 0.95166 0.86308 1.19921 0.83403 0.82571 0.83048 1.90699 1.82244 1.35215 1.33691 1.45964 1.05097 1.43488 1.40850 1.22008 0.86954 0.95530 0.92784 0.89322 1.23338 0.95134 1.02173 0.98751 1.21418 0.99929 0.89192 0.84752 1.44488 1.30195 1.50414 1.07800 1.19021 1.15738 1.12475 0.88365 0.90666 1.24804 1.00717 0.98612 0.96260 1.69935 1.36120 1.37690 1.12950 0.86128 0.79806 0.79523 0.80453 1.21644 1.21605 1.20592 1.21680 0.90777 0.93518 0.93969 1.22343 0.95446 1.05524 0.95144 1.20781 0.88969 0.75006 0.84378 1.90727 1.78554 1.50533 1.21090 0.92503 0.92509 0.92363 0.91488 0.91564 0.89977 0.90197 0.88864 0.89693 0.76266 0.91480 0.90548 0.91108 0.95627 0.93712 0.95101 0.95575 0.87240 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.14 -1.14 6.26 -26.73 -0.17 -1.31 16 3 C 0.13 1.06 5.93 -4.04 -0.02 1.03 16 4 N -0.62 -6.20 2.93 -172.42 -0.51 -6.71 16 5 C 0.12 1.11 6.71 -3.12 -0.02 1.09 16 6 C -0.13 -1.23 3.54 -90.14 -0.32 -1.55 16 7 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 8 C 0.53 6.99 7.05 -10.99 -0.08 6.91 16 9 O -0.54 -8.90 15.23 5.55 0.08 -8.82 16 10 N -0.70 -9.76 5.11 -52.03 -0.27 -10.02 16 11 C 0.13 2.17 3.25 -66.09 -0.21 1.95 16 12 H 0.09 1.42 7.69 -51.93 -0.40 1.02 16 13 C -0.15 -2.57 6.64 -24.58 -0.16 -2.73 16 14 C 0.17 3.81 5.40 -2.53 -0.01 3.80 16 15 N -0.60 -14.75 3.39 -170.07 -0.58 -15.33 16 16 C -0.23 -6.21 10.24 -15.06 -0.15 -6.37 16 17 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 18 C -0.01 -0.21 5.40 -17.43 -0.09 -0.30 16 19 N -0.92 -26.04 10.68 55.49 0.59 -25.45 16 20 Si 0.91 21.66 29.56 -169.99 -5.03 16.63 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.13 2.62 6.98 -3.06 -0.02 2.60 16 25 C -0.14 -1.37 6.41 -26.74 -0.17 -1.54 16 26 C 0.52 6.21 8.02 -10.86 -0.09 6.12 16 27 O -0.53 -8.22 17.59 5.55 0.10 -8.12 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.00 6.96 -51.92 -0.36 0.64 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.40 5.00 8.62 -40.82 -0.35 4.65 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.78 6.94 -51.93 -0.36 1.42 16 41 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 45 H 0.11 1.03 7.89 -51.93 -0.41 0.62 16 46 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -33.01 373.58 -8.88 -41.90 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.75 Total: 1.14 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.16 Total: 9.15 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.76 Total: -57.51 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.18 Total: -16.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.01 -8.88 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015772750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.499 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds