Wall clock time and date at job start Tue Mar 31 2020 03:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46829 * 2 1 4 4 N 1.46496 * 109.46952 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.35009 * 90.00040 * 4 3 2 6 6 C 1.54480 * 105.47844 * 162.71821 * 5 4 3 7 7 H 1.09000 * 110.97238 * 267.30061 * 6 5 4 8 8 C 1.50700 * 110.97243 * 143.53243 * 6 5 4 9 9 O 1.21284 * 119.99729 * 0.02562 * 8 6 5 10 10 N 1.34772 * 119.99851 * 180.02562 * 8 6 5 11 11 C 1.46509 * 119.99876 * 180.02562 * 10 8 6 12 12 H 1.08994 * 110.64003 * 323.31755 * 11 10 8 13 13 C 1.55154 * 110.71922 * 199.97485 * 11 10 8 14 14 C 1.54908 * 101.58299 * 277.13836 * 13 11 10 15 15 N 1.47417 * 104.83369 * 322.99303 * 14 13 11 16 16 C 1.36939 * 125.64897 * 204.08896 * 15 14 13 17 17 H 1.07999 * 120.00028 * 169.98037 * 16 15 14 18 18 C 1.38811 * 120.00084 * 349.98832 * 16 15 14 19 19 N 1.31618 * 119.99809 * 350.41121 * 18 16 15 20 20 Si 1.86797 * 120.00039 * 170.42167 * 18 16 15 21 21 H 1.48499 * 109.47544 * 94.14000 * 20 18 16 22 22 H 1.48500 * 109.46792 * 214.13786 * 20 18 16 23 23 H 1.48504 * 109.47312 * 334.13516 * 20 18 16 24 24 C 1.47021 * 108.70610 * 24.12903 * 15 14 13 25 25 C 1.54636 * 101.76042 * 25.41885 * 6 5 4 26 26 C 1.34422 * 124.35343 * 269.70223 * 4 3 2 27 27 O 1.21285 * 124.93646 * 0.65359 * 26 4 3 28 28 H 1.09006 * 109.47328 * 299.99882 * 1 2 3 29 29 H 1.08999 * 109.47297 * 59.99920 * 1 2 3 30 30 H 1.09003 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47089 * 240.00019 * 2 1 3 32 32 H 1.09001 * 109.46855 * 119.99805 * 2 1 3 33 33 H 1.08997 * 109.47269 * 60.00130 * 3 2 1 34 34 H 1.08999 * 109.47246 * 300.00111 * 3 2 1 35 35 H 1.09008 * 110.24743 * 281.72010 * 5 4 3 36 36 H 1.08996 * 110.24924 * 43.71961 * 5 4 3 37 37 H 0.97000 * 120.00209 * 0.02562 * 10 8 6 38 38 H 1.09002 * 111.00779 * 35.21565 * 13 11 10 39 39 H 1.08998 * 111.00061 * 159.06811 * 13 11 10 40 40 H 1.09000 * 110.36791 * 204.15439 * 14 13 11 41 41 H 1.09006 * 110.36507 * 81.83404 * 14 13 11 42 42 H 0.97002 * 120.00124 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.88458 * 239.52754 * 24 15 14 44 44 H 1.08997 * 110.01809 * 118.42968 * 24 15 14 45 45 H 1.08997 * 110.49151 * 93.88131 * 25 6 5 46 46 H 1.09005 * 110.48227 * 216.52497 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3335 1.4424 -1.2107 6 6 5.7396 1.8848 -0.7484 7 1 5.8613 2.9634 -0.8474 8 6 6.8133 1.1508 -1.5096 9 8 6.5084 0.3376 -2.3561 10 7 8.1124 1.3981 -1.2495 11 6 9.1563 0.6849 -1.9899 12 1 8.8553 -0.3447 -2.1828 13 6 10.5037 0.7324 -1.2221 14 6 11.0550 2.1164 -1.6467 15 7 10.6580 2.2638 -3.0587 16 6 11.2787 3.0608 -3.9833 17 1 11.0169 2.9805 -5.0280 18 6 12.2445 3.9716 -3.5777 19 7 12.4312 4.2059 -2.2961 20 14 13.2790 4.8649 -4.8510 21 1 12.6556 6.1759 -5.1640 22 1 14.6461 5.0826 -4.3135 23 1 13.3578 4.0464 -6.0875 24 6 9.4847 1.4142 -3.3097 25 6 5.7294 1.4631 0.7393 26 6 4.2629 1.4485 1.1107 27 8 3.8336 1.4432 2.2450 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 4.3750 0.4409 -1.6392 36 1 3.9365 2.1490 -1.9394 37 1 8.3562 2.0482 -0.5722 38 1 10.3414 0.6902 -0.1450 39 1 11.1671 -0.0689 -1.5474 40 1 12.1408 2.1370 -1.5538 41 1 10.6067 2.9050 -1.0422 42 1 13.1063 4.8422 -2.0127 43 1 9.7136 0.6864 -4.0883 44 1 8.6375 2.0286 -3.6145 45 1 6.1627 0.4700 0.8574 46 1 6.2692 2.1906 1.3456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015772750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:55 Heat of formation + Delta-G solvation = -73.264388 kcal Electronic energy + Delta-G solvation = -25859.589636 eV Core-core repulsion = 22169.555773 eV Total energy + Delta-G solvation = -3690.033862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.91960 -40.58861 -38.89125 -37.45941 -35.76551 -35.46100 -33.68499 -32.41459 -30.89917 -29.11864 -28.67497 -27.29547 -26.40503 -24.38296 -22.73077 -22.10302 -21.63828 -21.13297 -20.43096 -18.97341 -18.51889 -17.84994 -17.35847 -16.91605 -16.69112 -16.30107 -16.06002 -15.68167 -15.52982 -15.22189 -14.88039 -14.76499 -14.56957 -14.30946 -14.02393 -13.77457 -13.71516 -13.38436 -13.08317 -12.99062 -12.77881 -12.75015 -12.52862 -12.42707 -12.29766 -12.20498 -12.11709 -11.94549 -11.83785 -11.66981 -11.57989 -11.15655 -10.74896 -10.66315 -10.05697 -9.76654 -8.83787 -7.88165 -5.20914 1.45395 1.47041 1.48070 1.57047 1.57738 1.87810 2.23358 2.50317 3.18112 3.31560 3.33812 3.67156 3.78720 3.81699 3.86521 3.99545 4.03400 4.09624 4.21064 4.32985 4.34265 4.49531 4.53809 4.62073 4.65723 4.69340 4.75664 4.78888 4.86660 4.94100 4.98092 5.05119 5.07991 5.13829 5.16504 5.31960 5.46432 5.54543 5.60338 5.63051 5.76407 6.02305 6.22310 6.57722 7.05439 7.10837 7.23104 7.77798 8.42935 9.23420 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.002611 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.834815 B =10721.701941 C =10843.279528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.615 5.615 5 C 0.119 3.881 6 C -0.113 4.113 7 H 0.139 0.861 8 C 0.529 3.471 9 O -0.571 6.571 10 N -0.701 5.701 11 C 0.147 3.853 12 H 0.101 0.899 13 C -0.134 4.134 14 C 0.176 3.824 15 N -0.622 5.622 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.058 4.058 19 N -0.942 5.942 20 Si 0.973 3.027 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.273 1.273 24 C 0.125 3.875 25 C -0.136 4.136 26 C 0.514 3.486 27 O -0.575 6.575 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.412 0.588 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.010 0.990 42 H 0.249 0.751 43 H 0.027 0.973 44 H 0.013 0.987 45 H 0.113 0.887 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.669 -6.630 5.620 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.347 5.347 5 C -0.004 4.004 6 C -0.135 4.135 7 H 0.157 0.843 8 C 0.316 3.684 9 O -0.451 6.451 10 N -0.352 5.352 11 C 0.042 3.958 12 H 0.119 0.881 13 C -0.173 4.173 14 C 0.051 3.949 15 N -0.348 5.348 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.252 4.252 19 N -0.591 5.591 20 Si 0.801 3.199 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.198 1.198 24 C -0.001 4.001 25 C -0.176 4.176 26 C 0.302 3.698 27 O -0.455 6.455 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.123 0.877 37 H 0.248 0.752 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.031 0.969 45 H 0.131 0.869 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.043 -7.065 5.570 21.061 hybrid contribution 0.959 0.997 -0.450 1.454 sum -18.084 -6.068 5.121 19.751 Atomic orbital electron populations 1.21671 0.93503 1.02540 1.02610 1.21866 0.97532 0.96600 1.01702 1.21639 0.76789 0.97592 1.04045 1.48473 1.07067 1.72094 1.07066 1.22032 0.87714 1.03924 0.86721 1.22195 0.93336 1.03255 0.94711 0.84300 1.20397 0.83541 0.81952 0.82536 1.90695 1.82654 1.36589 1.35143 1.45900 1.04950 1.43598 1.40733 1.21733 0.87626 0.95644 0.90826 0.88107 1.23178 0.94698 0.98573 1.00813 1.21265 0.97788 0.92096 0.83706 1.44758 1.31417 1.50334 1.08332 1.19316 1.16142 1.12892 0.89004 0.91060 1.25545 1.01881 0.99719 0.98064 1.70105 1.36459 1.38164 1.14352 0.85162 0.77910 0.78319 0.78496 1.21425 1.21793 1.19803 1.21799 0.88993 0.92907 0.96450 1.22335 0.94049 1.06326 0.94917 1.21168 0.90085 0.74418 0.84094 1.90704 1.79388 1.52695 1.22697 0.92515 0.91155 0.92058 0.91475 0.93820 0.90803 0.87685 0.89965 0.87700 0.75200 0.87998 0.89840 0.94746 0.97200 0.94202 0.95474 0.96903 0.86891 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.91 16 2 C -0.14 -2.10 6.26 30.59 0.19 -1.90 16 3 C 0.12 1.84 5.93 86.38 0.51 2.36 16 4 N -0.61 -11.35 2.93 -818.00 -2.40 -13.74 16 5 C 0.12 1.99 6.71 86.83 0.58 2.57 16 6 C -0.11 -1.94 3.54 -10.48 -0.04 -1.97 16 7 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 8 C 0.53 12.91 7.05 87.66 0.62 13.53 16 9 O -0.57 -17.82 15.23 -3.04 -0.05 -17.87 16 10 N -0.70 -17.84 5.11 -436.91 -2.23 -20.08 16 11 C 0.15 4.55 3.25 46.18 0.15 4.70 16 12 H 0.10 2.97 7.69 -2.39 -0.02 2.95 16 13 C -0.13 -4.15 6.64 31.98 0.21 -3.94 16 14 C 0.18 7.79 5.40 86.86 0.47 8.26 16 15 N -0.62 -30.57 3.39 -691.99 -2.35 -32.92 16 16 C -0.24 -13.46 10.24 84.03 0.86 -12.60 16 17 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 18 C -0.06 -3.22 5.40 84.86 0.46 -2.76 16 19 N -0.94 -54.11 10.68 21.65 0.23 -53.88 16 20 Si 0.97 44.77 29.56 68.60 2.03 46.80 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 C 0.12 5.07 6.98 86.73 0.61 5.68 16 25 C -0.14 -2.28 6.41 30.59 0.20 -2.09 16 26 C 0.51 11.65 8.02 87.90 0.71 12.36 16 27 O -0.57 -17.64 17.59 -3.05 -0.05 -17.70 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.28 7.92 -2.39 -0.02 1.26 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.63 6.96 -2.38 -0.02 1.61 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.41 9.17 8.62 -92.71 -0.80 8.37 16 38 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.03 1.76 6.94 -2.39 -0.02 1.74 16 41 H 0.01 0.47 8.07 -2.38 -0.02 0.45 16 42 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.01 0.56 8.04 -2.39 -0.02 0.54 16 45 H 0.11 1.87 7.89 -2.39 -0.02 1.85 16 46 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -72.64 373.58 1.58 -71.06 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.17 Total: 15.07 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 6.24 Total: 23.26 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -6.75 Total: -120.62 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.10 Total: -35.57 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -72.64 1.58 -71.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015772750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.208 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds