Wall clock time and date at job start Tue Mar 31 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47348 * 2 1 4 4 O 1.21283 * 119.99503 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00081 * 179.72561 * 3 2 1 6 6 C 1.47014 * 125.65113 * 0.02562 * 5 3 2 7 7 C 1.54322 * 107.27676 * 181.02629 * 6 5 3 8 8 C 1.55163 * 102.93907 * 22.19393 * 7 6 5 9 9 H 1.08992 * 111.00282 * 82.60980 * 8 7 6 10 10 C 1.50697 * 111.00315 * 206.42692 * 8 7 6 11 11 O 1.21286 * 119.99952 * 118.54406 * 10 8 7 12 12 N 1.34779 * 120.00037 * 298.54309 * 10 8 7 13 13 C 1.46497 * 119.99846 * 179.97438 * 12 10 8 14 14 H 1.09005 * 110.64535 * 323.31735 * 13 12 10 15 15 C 1.55155 * 110.71859 * 199.97762 * 13 12 10 16 16 C 1.54915 * 101.58114 * 277.14151 * 15 13 12 17 17 N 1.47423 * 104.83366 * 322.98705 * 16 15 13 18 18 C 1.36931 * 125.65266 * 204.09165 * 17 16 15 19 19 H 1.07997 * 120.00276 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99856 * 0.04613 * 18 17 16 21 21 N 1.31618 * 119.99697 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00055 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47296 * 59.99636 * 22 20 18 24 24 H 1.48499 * 109.47037 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46945 * 300.00049 * 22 20 18 26 26 C 1.47028 * 108.69984 * 24.13176 * 17 16 15 27 27 C 1.47422 * 125.64458 * 179.72077 * 5 3 2 28 28 H 1.09002 * 109.46857 * 60.00224 * 1 2 3 29 29 H 1.09002 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46986 * 300.00089 * 1 2 3 31 31 H 1.09001 * 109.47671 * 240.00209 * 2 1 3 32 32 H 1.08998 * 109.47454 * 120.00206 * 2 1 3 33 33 H 1.09004 * 109.88637 * 300.44775 * 6 5 3 34 34 H 1.09005 * 109.88390 * 61.45570 * 6 5 3 35 35 H 1.08995 * 110.72455 * 140.55753 * 7 6 5 36 36 H 1.09000 * 110.71837 * 263.83316 * 7 6 5 37 37 H 0.96997 * 119.99733 * 0.02562 * 12 10 8 38 38 H 1.08992 * 111.00727 * 35.21521 * 15 13 12 39 39 H 1.09004 * 111.00446 * 159.07281 * 15 13 12 40 40 H 1.09007 * 110.36445 * 204.15506 * 16 15 13 41 41 H 1.08998 * 110.45956 * 81.87784 * 16 15 13 42 42 H 0.97004 * 119.99617 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.88200 * 239.51864 * 26 17 16 44 44 H 1.09001 * 110.01325 * 118.42608 * 26 17 16 45 45 H 1.09003 * 110.36501 * 274.73856 * 27 5 3 46 46 H 1.08994 * 110.37145 * 37.06407 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0056 6 6 4.4181 0.6491 0.0115 7 6 5.7688 1.3949 0.0430 8 6 5.3865 2.7818 0.6242 9 1 5.3338 2.7483 1.7124 10 6 6.3516 3.8444 0.1654 11 8 5.9541 4.7796 -0.4966 12 7 7.6565 3.7554 0.4908 13 6 8.5947 4.7881 0.0443 14 1 8.3344 5.1379 -0.9548 15 6 10.0527 4.2586 0.0823 16 6 10.4224 4.4723 1.5714 17 7 9.7669 5.7388 1.9451 18 6 10.1541 6.5675 2.9641 19 1 9.6050 7.4769 3.1588 20 6 11.2525 6.2389 3.7467 21 7 11.9215 5.1305 3.5095 22 14 11.7802 7.3690 5.1373 23 1 10.6704 7.5027 6.1148 24 1 12.9713 6.7970 5.8151 25 1 12.1188 8.7061 4.5871 26 6 8.6280 5.9642 1.0430 27 6 3.9832 3.0019 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.3221 0.0187 0.8955 34 1 4.3504 0.0380 -0.8886 35 1 6.4761 0.8844 0.6967 36 1 6.1763 1.4972 -0.9628 37 1 7.9744 3.0073 1.0200 38 1 10.0916 3.2020 -0.1822 39 1 10.6991 4.8470 -0.5690 40 1 11.5032 4.5565 1.6856 41 1 10.0400 3.6530 2.1802 42 1 12.6889 4.9007 4.0566 43 1 8.7610 6.9032 0.5057 44 1 7.6998 5.9921 1.6138 45 1 4.0733 3.3747 -1.0199 46 1 3.4027 3.6954 0.6087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015956981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:51 Heat of formation + Delta-G solvation = -48.115375 kcal Electronic energy + Delta-G solvation = -25789.202133 eV Core-core repulsion = 22100.258813 eV Total energy + Delta-G solvation = -3688.943319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63341 -39.53903 -37.75506 -36.88625 -33.91368 -33.22087 -32.26185 -31.41213 -29.47921 -29.15981 -27.34764 -25.62643 -24.50241 -23.07484 -22.63045 -20.27788 -20.19632 -19.81018 -19.41362 -17.70399 -17.44459 -16.89217 -16.15937 -15.83610 -15.57995 -15.12331 -14.73013 -14.67648 -14.01492 -13.87463 -13.73476 -13.61698 -13.14900 -13.09146 -12.65278 -12.55877 -12.52217 -12.20899 -12.06411 -11.94989 -11.65994 -11.51461 -11.47437 -11.19427 -11.09393 -10.89916 -10.80400 -10.44640 -10.18036 -10.07869 -9.93954 -9.68287 -9.57788 -8.92562 -8.78553 -8.65024 -6.87883 -5.69989 -3.10783 2.40027 2.62390 2.72762 3.37996 3.39575 3.42920 3.44269 4.00319 4.15357 4.42970 4.46525 4.54780 4.72954 4.76342 4.90393 4.96817 5.04113 5.12651 5.24627 5.31111 5.40238 5.41857 5.45654 5.46422 5.56341 5.64009 5.70523 5.71460 5.80126 5.82681 5.90156 6.00617 6.21583 6.31601 6.43366 6.50175 6.69851 6.99439 7.22601 7.37486 7.58335 7.71169 7.79104 7.92223 8.30261 8.38371 9.18386 9.78894 10.43037 11.34294 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.002553 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.120863 B =10964.629876 C =11176.497768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.525 3.475 4 O -0.539 6.539 5 N -0.623 5.623 6 C 0.102 3.898 7 C -0.122 4.122 8 C -0.126 4.126 9 H 0.113 0.887 10 C 0.525 3.475 11 O -0.541 6.541 12 N -0.706 5.706 13 C 0.131 3.869 14 H 0.088 0.912 15 C -0.152 4.152 16 C 0.151 3.849 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.925 5.925 22 Si 0.915 3.085 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.127 3.873 27 C 0.127 3.873 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.400 0.600 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.010 0.990 42 H 0.252 0.748 43 H 0.031 0.969 44 H 0.026 0.974 45 H 0.083 0.917 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 -15.621 -8.249 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.315 3.685 4 O -0.415 6.415 5 N -0.359 5.359 6 C -0.021 4.021 7 C -0.161 4.161 8 C -0.148 4.148 9 H 0.131 0.869 10 C 0.309 3.691 11 O -0.419 6.419 12 N -0.356 5.356 13 C 0.026 3.974 14 H 0.106 0.894 15 C -0.191 4.191 16 C 0.026 3.974 17 N -0.330 5.330 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.574 5.574 22 Si 0.746 3.254 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.000 4.000 27 C 0.004 3.996 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.028 0.972 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.043 0.957 45 H 0.101 0.899 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.162 -14.442 -8.561 21.965 hybrid contribution 0.575 0.154 1.147 1.292 sum -13.587 -14.289 -7.414 21.066 Atomic orbital electron populations 1.21545 0.92942 1.01598 1.03468 1.21618 0.98579 0.93446 1.04246 1.20493 0.80205 0.92009 0.75843 1.90727 1.54244 1.46798 1.49746 1.48578 1.05255 1.08190 1.73836 1.22058 0.86561 0.91341 1.02167 1.22668 0.96646 0.93826 1.02921 1.22524 0.94862 0.94732 1.02653 0.86892 1.20024 0.82804 0.86336 0.79891 1.90716 1.77639 1.34087 1.39411 1.45967 1.07386 1.27353 1.54903 1.22011 0.89073 0.88494 0.97800 0.89447 1.23334 0.93806 0.99861 1.02141 1.21950 1.01742 0.86866 0.86794 1.44505 1.30129 1.23090 1.35251 1.19049 1.09200 1.01218 1.05413 0.90570 1.24770 0.98302 0.97809 0.99835 1.69763 1.21884 1.24294 1.41432 0.86135 0.77793 0.79783 0.81704 1.21252 1.21569 1.21130 1.21683 0.91697 0.94959 0.91636 1.22035 0.90750 0.84478 1.02305 0.91952 0.92015 0.91916 0.88992 0.88932 0.90830 0.90906 0.88770 0.89707 0.76516 0.91723 0.90574 0.87403 0.97178 0.93705 0.95113 0.95657 0.89903 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.20 37.16 0.34 -0.67 16 2 C -0.14 -0.96 5.61 -27.88 -0.16 -1.12 16 3 C 0.53 5.90 7.85 -10.98 -0.09 5.81 16 4 O -0.54 -8.38 16.23 5.56 0.09 -8.29 16 5 N -0.62 -6.28 3.32 -170.38 -0.57 -6.85 16 6 C 0.10 0.65 6.48 -3.07 -0.02 0.63 16 7 C -0.12 -0.86 6.37 -24.89 -0.16 -1.02 16 8 C -0.13 -1.31 3.45 -89.50 -0.31 -1.62 16 9 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 10 C 0.52 7.51 7.15 -10.99 -0.08 7.44 16 11 O -0.54 -9.83 15.53 5.55 0.09 -9.75 16 12 N -0.71 -10.14 5.07 -52.03 -0.26 -10.40 16 13 C 0.13 2.24 3.25 -66.10 -0.21 2.03 16 14 H 0.09 1.48 7.69 -51.93 -0.40 1.08 16 15 C -0.15 -2.60 6.64 -24.58 -0.16 -2.77 16 16 C 0.15 3.41 5.87 -2.53 -0.01 3.40 16 17 N -0.60 -15.10 3.39 -170.06 -0.58 -15.67 16 18 C -0.22 -6.10 10.27 -15.06 -0.15 -6.26 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -26.16 10.09 55.49 0.56 -25.60 16 22 Si 0.92 21.90 29.55 -169.99 -5.02 16.87 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.13 2.72 6.98 -3.06 -0.02 2.70 16 27 C 0.13 1.53 5.97 -2.41 -0.01 1.51 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 37 H 0.40 5.02 8.62 -40.82 -0.35 4.66 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.11 2.79 5.87 -51.93 -0.31 2.48 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.03 0.57 8.04 -51.93 -0.42 0.16 16 45 H 0.08 1.12 7.52 -51.93 -0.39 0.72 16 46 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -34.20 370.82 -8.99 -43.18 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.74 Total: 1.28 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.15 Total: 9.64 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.85 Total: -58.53 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.18 Total: -18.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.20 -8.99 -43.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015956981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.930 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds