Wall clock time and date at job start Tue Mar 31 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47348 * 2 1 4 4 O 1.21283 * 119.99503 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00081 * 179.72561 * 3 2 1 6 6 C 1.47014 * 125.65113 * 0.02562 * 5 3 2 7 7 C 1.54322 * 107.27676 * 181.02629 * 6 5 3 8 8 C 1.55163 * 102.93907 * 22.19393 * 7 6 5 9 9 H 1.08992 * 111.00282 * 82.60980 * 8 7 6 10 10 C 1.50697 * 111.00315 * 206.42692 * 8 7 6 11 11 O 1.21286 * 119.99952 * 118.54406 * 10 8 7 12 12 N 1.34779 * 120.00037 * 298.54309 * 10 8 7 13 13 C 1.46497 * 119.99846 * 179.97438 * 12 10 8 14 14 H 1.09005 * 110.64535 * 323.31735 * 13 12 10 15 15 C 1.55155 * 110.71859 * 199.97762 * 13 12 10 16 16 C 1.54915 * 101.58114 * 277.14151 * 15 13 12 17 17 N 1.47423 * 104.83366 * 322.98705 * 16 15 13 18 18 C 1.36931 * 125.65266 * 204.09165 * 17 16 15 19 19 H 1.07997 * 120.00276 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99856 * 0.04613 * 18 17 16 21 21 N 1.31618 * 119.99697 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00055 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47296 * 59.99636 * 22 20 18 24 24 H 1.48499 * 109.47037 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46945 * 300.00049 * 22 20 18 26 26 C 1.47028 * 108.69984 * 24.13176 * 17 16 15 27 27 C 1.47422 * 125.64458 * 179.72077 * 5 3 2 28 28 H 1.09002 * 109.46857 * 60.00224 * 1 2 3 29 29 H 1.09002 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46986 * 300.00089 * 1 2 3 31 31 H 1.09001 * 109.47671 * 240.00209 * 2 1 3 32 32 H 1.08998 * 109.47454 * 120.00206 * 2 1 3 33 33 H 1.09004 * 109.88637 * 300.44775 * 6 5 3 34 34 H 1.09005 * 109.88390 * 61.45570 * 6 5 3 35 35 H 1.08995 * 110.72455 * 140.55753 * 7 6 5 36 36 H 1.09000 * 110.71837 * 263.83316 * 7 6 5 37 37 H 0.96997 * 119.99733 * 0.02562 * 12 10 8 38 38 H 1.08992 * 111.00727 * 35.21521 * 15 13 12 39 39 H 1.09004 * 111.00446 * 159.07281 * 15 13 12 40 40 H 1.09007 * 110.36445 * 204.15506 * 16 15 13 41 41 H 1.08998 * 110.45956 * 81.87784 * 16 15 13 42 42 H 0.97004 * 119.99617 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.88200 * 239.51864 * 26 17 16 44 44 H 1.09001 * 110.01325 * 118.42608 * 26 17 16 45 45 H 1.09003 * 110.36501 * 274.73856 * 27 5 3 46 46 H 1.08994 * 110.37145 * 37.06407 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0056 6 6 4.4181 0.6491 0.0115 7 6 5.7688 1.3949 0.0430 8 6 5.3865 2.7818 0.6242 9 1 5.3338 2.7483 1.7124 10 6 6.3516 3.8444 0.1654 11 8 5.9541 4.7796 -0.4966 12 7 7.6565 3.7554 0.4908 13 6 8.5947 4.7881 0.0443 14 1 8.3344 5.1379 -0.9548 15 6 10.0527 4.2586 0.0823 16 6 10.4224 4.4723 1.5714 17 7 9.7669 5.7388 1.9451 18 6 10.1541 6.5675 2.9641 19 1 9.6050 7.4769 3.1588 20 6 11.2525 6.2389 3.7467 21 7 11.9215 5.1305 3.5095 22 14 11.7802 7.3690 5.1373 23 1 10.6704 7.5027 6.1148 24 1 12.9713 6.7970 5.8151 25 1 12.1188 8.7061 4.5871 26 6 8.6280 5.9642 1.0430 27 6 3.9832 3.0019 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.3221 0.0187 0.8955 34 1 4.3504 0.0380 -0.8886 35 1 6.4761 0.8844 0.6967 36 1 6.1763 1.4972 -0.9628 37 1 7.9744 3.0073 1.0200 38 1 10.0916 3.2020 -0.1822 39 1 10.6991 4.8470 -0.5690 40 1 11.5032 4.5565 1.6856 41 1 10.0400 3.6530 2.1802 42 1 12.6889 4.9007 4.0566 43 1 8.7610 6.9032 0.5057 44 1 7.6998 5.9921 1.6138 45 1 4.0733 3.3747 -1.0199 46 1 3.4027 3.6954 0.6087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015956981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:50 Heat of formation + Delta-G solvation = -72.162960 kcal Electronic energy + Delta-G solvation = -25790.244914 eV Core-core repulsion = 22100.258813 eV Total energy + Delta-G solvation = -3689.986101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59169 -40.64230 -39.08830 -38.03245 -35.51701 -34.00300 -33.65655 -32.53823 -30.93539 -30.15882 -28.97314 -26.77012 -26.10436 -23.89672 -23.38929 -22.06301 -21.50076 -21.08068 -20.16280 -19.00980 -18.50554 -18.22010 -17.42868 -16.79129 -16.68888 -16.55161 -16.12192 -15.65034 -15.53216 -15.28984 -14.62636 -14.52188 -14.38300 -14.16863 -13.90401 -13.75631 -13.53099 -13.39678 -13.12554 -13.01924 -12.85757 -12.78570 -12.58663 -12.32810 -12.32268 -12.09982 -12.06161 -12.04043 -11.83279 -11.82497 -11.45388 -10.97206 -10.84672 -10.74757 -10.09230 -9.71990 -8.89333 -7.78836 -5.22090 1.46397 1.48391 1.54935 1.57737 1.58667 1.80204 2.31397 2.48801 3.22363 3.30741 3.44531 3.68308 3.76109 3.80071 3.84748 4.07889 4.14920 4.20835 4.23497 4.27980 4.31984 4.32140 4.58768 4.65751 4.70884 4.75545 4.79190 4.85069 4.91601 4.95244 5.00221 5.03149 5.05547 5.07097 5.13342 5.23242 5.36812 5.43540 5.57608 5.65799 5.81863 6.32596 6.47173 6.57490 7.11058 7.11755 7.23249 7.77275 8.39955 9.22107 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.002553 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.120863 B =10964.629876 C =11176.497768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.513 3.487 4 O -0.597 6.597 5 N -0.622 5.622 6 C 0.098 3.902 7 C -0.114 4.114 8 C -0.115 4.115 9 H 0.125 0.875 10 C 0.525 3.475 11 O -0.584 6.584 12 N -0.697 5.697 13 C 0.146 3.854 14 H 0.095 0.905 15 C -0.130 4.130 16 C 0.153 3.847 17 N -0.622 5.622 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.059 4.059 21 N -0.942 5.942 22 Si 0.977 3.023 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.280 1.280 26 C 0.124 3.876 27 C 0.126 3.874 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.002 0.998 42 H 0.249 0.751 43 H 0.022 0.978 44 H 0.008 0.992 45 H 0.062 0.938 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.152 -18.698 -8.451 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.305 3.695 4 O -0.478 6.478 5 N -0.356 5.356 6 C -0.023 4.023 7 C -0.152 4.152 8 C -0.137 4.137 9 H 0.143 0.857 10 C 0.312 3.688 11 O -0.464 6.464 12 N -0.348 5.348 13 C 0.040 3.960 14 H 0.113 0.887 15 C -0.169 4.169 16 C 0.028 3.972 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.252 4.252 21 N -0.591 5.591 22 Si 0.805 3.195 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.207 1.207 26 C -0.002 4.002 27 C 0.002 3.998 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.103 0.897 37 H 0.250 0.750 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.020 0.980 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.761 -17.578 -8.768 23.984 hybrid contribution 0.433 1.163 1.206 1.731 sum -13.327 -16.415 -7.562 22.455 Atomic orbital electron populations 1.21564 0.93670 1.02785 1.01666 1.21687 0.97855 0.90425 1.06816 1.21452 0.80036 0.93394 0.74630 1.90699 1.55779 1.48853 1.52462 1.48702 1.05870 1.08119 1.72896 1.22387 0.84529 0.90566 1.04849 1.22764 0.97812 0.91252 1.03339 1.22427 0.92573 0.95623 1.03118 0.85733 1.20664 0.82962 0.86428 0.78777 1.90704 1.78288 1.36030 1.41383 1.45834 1.07134 1.26947 1.54910 1.21717 0.89891 0.87679 0.96685 0.88706 1.23165 0.93183 1.02472 0.98055 1.21799 0.99503 0.85596 0.90259 1.44770 1.31332 1.23597 1.35198 1.19319 1.09589 1.01734 1.06628 0.91246 1.25519 0.98376 0.99322 1.02021 1.69991 1.21883 1.25317 1.41929 0.85185 0.77228 0.78128 0.78956 1.20864 1.21407 1.20658 1.21782 0.89825 0.96816 0.91800 1.21816 0.91716 0.85580 1.00661 0.93812 0.89163 0.93816 0.86180 0.86106 0.87956 0.88374 0.85765 0.89657 0.75030 0.87680 0.90242 0.90722 0.98038 0.94113 0.96028 0.97390 0.91987 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 71.98 0.66 -1.18 16 2 C -0.13 -1.39 5.61 29.85 0.17 -1.23 16 3 C 0.51 11.11 7.85 87.66 0.69 11.80 16 4 O -0.60 -19.43 16.23 -3.04 -0.05 -19.48 16 5 N -0.62 -11.55 3.32 -811.35 -2.70 -14.25 16 6 C 0.10 0.83 6.48 86.73 0.56 1.39 16 7 C -0.11 -1.15 6.37 31.78 0.20 -0.95 16 8 C -0.12 -2.23 3.45 -10.07 -0.03 -2.27 16 9 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 10 C 0.52 14.58 7.15 87.66 0.63 15.20 16 11 O -0.58 -21.53 15.53 -3.05 -0.05 -21.58 16 12 N -0.70 -18.76 5.07 -436.91 -2.21 -20.98 16 13 C 0.15 4.82 3.25 46.18 0.15 4.97 16 14 H 0.09 3.08 7.69 -2.38 -0.02 3.06 16 15 C -0.13 -4.16 6.64 31.99 0.21 -3.95 16 16 C 0.15 6.84 5.87 86.86 0.51 7.35 16 17 N -0.62 -31.54 3.39 -691.96 -2.35 -33.89 16 18 C -0.24 -13.73 10.27 84.04 0.86 -12.87 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 21 N -0.94 -53.74 10.09 21.65 0.22 -53.52 16 22 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 C 0.12 5.39 6.98 86.73 0.61 6.00 16 27 C 0.13 3.08 5.97 86.94 0.52 3.60 16 28 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.92 8.03 -2.39 -0.02 0.90 16 37 H 0.41 9.15 8.62 -92.71 -0.80 8.35 16 38 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.07 3.89 5.87 -2.38 -0.01 3.87 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.25 13.81 8.31 -92.71 -0.77 13.03 16 43 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.01 0.38 8.04 -2.39 -0.02 0.36 16 45 H 0.06 1.76 7.52 -2.39 -0.02 1.74 16 46 H 0.05 1.64 8.03 -2.39 -0.02 1.62 16 Total: -1.00 -79.52 370.82 1.26 -78.26 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.17 Total: 13.13 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 6.20 Total: 25.03 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -7.04 Total: -122.64 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.10 Total: -41.06 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -79.52 1.26 -78.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015956981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.099 kcal (2) G-P(sol) polarization free energy of solvation -79.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds