Wall clock time and date at job start Tue Mar 31 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47276 * 2 1 4 4 N 1.46497 * 109.47088 * 120.00462 * 2 1 3 5 5 C 1.46831 * 124.33256 * 119.93644 * 4 2 1 6 6 C 1.54480 * 105.43808 * 196.99817 * 5 4 2 7 7 H 1.08998 * 110.97214 * 92.77218 * 6 5 4 8 8 C 1.50705 * 110.96423 * 216.49037 * 6 5 4 9 9 O 1.21276 * 120.00178 * 356.90931 * 8 6 5 10 10 N 1.34780 * 119.99925 * 176.91278 * 8 6 5 11 11 C 1.46501 * 119.99777 * 359.97438 * 10 8 6 12 12 C 1.46500 * 119.99889 * 180.02562 * 10 8 6 13 13 C 1.53497 * 114.20434 * 239.99623 * 12 10 8 14 14 N 1.47062 * 87.98453 * 220.34649 * 13 12 10 15 15 C 1.36943 * 136.05579 * 207.08745 * 14 13 12 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99622 * 180.27778 * 15 14 13 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48504 * 109.47306 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47021 * 119.99661 * 19 17 15 22 22 H 1.48501 * 109.47039 * 240.00078 * 19 17 15 23 23 C 1.47067 * 87.88602 * 27.34481 * 14 13 12 24 24 C 1.54624 * 101.80375 * 334.62557 * 6 5 4 25 25 C 1.34409 * 124.34954 * 299.96911 * 4 2 1 26 26 O 1.21286 * 124.94489 * 359.55380 * 25 4 2 27 27 H 1.08999 * 109.46764 * 299.99736 * 1 2 3 28 28 H 1.08999 * 109.46885 * 59.99647 * 1 2 3 29 29 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46764 * 240.00264 * 2 1 3 31 31 H 1.08999 * 109.47452 * 300.00006 * 3 2 1 32 32 H 1.08999 * 109.47009 * 60.00414 * 3 2 1 33 33 H 1.09002 * 109.47325 * 180.02562 * 3 2 1 34 34 H 1.08993 * 110.23620 * 78.01939 * 5 4 2 35 35 H 1.09003 * 110.27908 * 315.99705 * 5 4 2 36 36 H 1.09000 * 109.47072 * 269.99650 * 11 10 8 37 37 H 1.08997 * 109.47479 * 29.99990 * 11 10 8 38 38 H 1.08999 * 109.46846 * 150.00037 * 11 10 8 39 39 H 1.08999 * 113.28356 * 13.06783 * 12 10 8 40 40 H 1.09000 * 113.46436 * 105.56277 * 13 12 10 41 41 H 1.08997 * 113.51966 * 335.14062 * 13 12 10 42 42 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 43 43 H 1.08994 * 113.46653 * 87.43736 * 23 14 13 44 44 H 1.08996 * 113.46465 * 217.87717 * 23 14 13 45 45 H 1.09000 * 110.48983 * 143.46076 * 24 6 5 46 46 H 1.09002 * 110.48548 * 266.10913 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8649 -1.8902 1.1721 6 6 2.7604 -2.4956 2.5895 7 1 1.9671 -3.2416 2.6375 8 6 4.0780 -3.0851 3.0225 9 8 5.0206 -3.0890 2.2594 10 7 4.2089 -3.6078 4.2579 11 6 3.0704 -3.6026 5.1799 12 6 5.4900 -4.1803 4.6790 13 6 5.4201 -5.6648 5.0630 14 7 6.3312 -5.3659 6.1780 15 6 7.2615 -6.0603 6.9045 16 1 7.4522 -7.1002 6.6841 17 6 7.9547 -5.4291 7.9281 18 7 7.7219 -4.1619 8.1970 19 14 9.2182 -6.3784 8.9242 20 1 9.2918 -7.7759 8.4274 21 1 10.5474 -5.7316 8.7828 22 1 8.8192 -6.3825 10.3546 23 6 5.7990 -3.9949 6.1738 24 6 2.4041 -1.2534 3.4386 25 6 1.7485 -0.3082 2.4560 26 8 1.0776 0.6551 2.7610 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 3.8974 -1.6186 0.9531 35 1 2.4951 -2.5988 0.4310 36 1 3.0817 -2.6835 5.7658 37 1 2.1422 -3.6597 4.6114 38 1 3.1404 -4.4606 5.8484 39 1 6.3142 -3.9297 4.0113 40 1 5.8534 -6.3277 4.3141 41 1 4.4292 -5.9844 5.3857 42 1 8.2067 -3.7209 8.9121 43 1 4.9078 -3.8734 6.7894 44 1 6.5552 -3.2352 6.3712 45 1 1.7076 -1.5213 4.2331 46 1 3.3059 -0.8050 3.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042829151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:46 Heat of formation + Delta-G solvation = -0.535681 kcal Electronic energy + Delta-G solvation = -26270.060677 eV Core-core repulsion = 22583.180568 eV Total energy + Delta-G solvation = -3686.880109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13249 -39.68315 -37.92631 -36.45400 -35.21078 -34.52814 -32.10423 -30.46520 -27.96873 -27.73930 -27.45354 -26.78146 -24.67237 -24.32350 -22.67984 -22.39280 -19.72043 -19.12485 -18.61028 -17.60435 -16.93536 -16.82027 -16.25136 -15.90894 -15.31313 -15.00519 -14.82168 -14.39190 -14.01108 -13.91187 -13.87891 -13.77923 -13.45208 -12.97886 -12.87480 -12.55285 -12.34863 -12.34322 -12.10640 -11.91962 -11.73319 -11.61418 -11.54759 -11.48530 -11.38996 -11.35381 -10.96872 -10.81966 -10.24557 -10.13074 -9.94699 -9.53775 -9.51866 -8.91456 -8.89365 -8.22325 -6.98343 -5.85218 -3.18615 2.41606 2.62375 2.68891 3.12466 3.35605 3.40895 3.43375 4.00639 4.13057 4.39937 4.49282 4.57557 4.70701 4.77452 4.87445 4.93697 5.18527 5.22010 5.24535 5.32982 5.35003 5.35251 5.38445 5.45279 5.52085 5.54501 5.59023 5.65650 5.71839 5.79642 5.91344 5.99219 6.00513 6.07744 6.36537 6.40117 6.49762 6.66208 6.91850 7.09976 7.23203 7.44548 7.62212 7.88528 8.00087 8.26590 8.95239 9.61607 10.52084 11.32310 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.035855 B = 0.002651 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.737662 B =10559.467048 C =10716.115375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.617 5.617 5 C 0.117 3.883 6 C -0.122 4.122 7 H 0.116 0.884 8 C 0.523 3.477 9 O -0.539 6.539 10 N -0.591 5.591 11 C 0.073 3.927 12 C 0.086 3.914 13 C 0.107 3.893 14 N -0.603 5.603 15 C -0.219 4.219 16 H 0.084 0.916 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.916 3.084 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.149 3.851 24 C -0.146 4.146 25 C 0.523 3.477 26 O -0.529 6.529 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.043 0.957 41 H 0.034 0.966 42 H 0.255 0.745 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.321 6.138 -14.945 22.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.352 5.352 5 C -0.006 4.006 6 C -0.144 4.144 7 H 0.134 0.866 8 C 0.309 3.691 9 O -0.417 6.417 10 N -0.323 5.323 11 C -0.070 4.070 12 C -0.018 4.018 13 C -0.021 4.021 14 N -0.329 5.329 15 C -0.346 4.346 16 H 0.102 0.898 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.746 3.254 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.022 3.978 24 C -0.186 4.186 25 C 0.310 3.690 26 O -0.406 6.406 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.129 0.871 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.917 6.607 -14.975 22.146 hybrid contribution 0.542 -0.660 0.772 1.151 sum -14.375 5.947 -14.204 21.065 Atomic orbital electron populations 1.22184 0.94689 1.02343 1.03291 1.20939 0.94384 0.93203 0.86459 1.22189 1.01498 0.95722 1.03257 1.48512 1.51169 1.29281 1.06205 1.22019 0.96525 0.86112 0.95904 1.22226 0.97886 0.98160 0.96145 0.86619 1.20010 0.88971 0.78190 0.81948 1.90698 1.40781 1.57727 1.52490 1.47894 1.13109 1.58197 1.13070 1.21919 0.87722 1.03345 0.94064 1.23876 0.84324 0.94819 0.98774 1.22810 0.93941 0.94402 0.90915 1.45274 1.40804 1.09127 1.37717 1.18957 1.11316 0.93980 1.10316 0.89805 1.24829 1.00221 0.96378 0.98922 1.69823 1.44094 1.09676 1.32887 0.85994 0.80873 0.78825 0.79745 1.20356 1.21552 1.21654 1.22520 0.96748 0.90216 0.88314 1.22438 1.03514 0.94371 0.98324 1.20737 0.79587 0.84960 0.83674 1.90697 1.39739 1.28667 1.81487 0.90972 0.91507 0.92486 0.89367 0.91516 0.90941 0.92335 0.88949 0.89862 0.92059 0.91511 0.90124 0.86204 0.93843 0.94831 0.93528 0.95102 0.90623 0.87075 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.20 37.16 0.34 -0.98 16 2 C 0.15 1.27 3.47 -67.93 -0.24 1.03 16 3 C -0.17 -1.47 9.20 37.16 0.34 -1.12 16 4 N -0.62 -6.04 2.83 -164.79 -0.47 -6.51 16 5 C 0.12 1.08 6.65 -3.09 -0.02 1.06 16 6 C -0.12 -1.16 2.55 -90.14 -0.23 -1.39 16 7 H 0.12 0.84 7.41 -51.93 -0.38 0.45 16 8 C 0.52 7.13 6.98 -10.98 -0.08 7.06 16 9 O -0.54 -9.30 15.04 5.56 0.08 -9.21 16 10 N -0.59 -8.48 3.11 -173.56 -0.54 -9.02 16 11 C 0.07 0.80 7.74 59.85 0.46 1.26 16 12 C 0.09 1.60 4.58 -67.68 -0.31 1.29 16 13 C 0.11 2.13 8.24 -8.51 -0.07 2.06 16 14 N -0.60 -15.13 3.78 -184.63 -0.70 -15.83 16 15 C -0.22 -6.02 10.75 -15.06 -0.16 -6.19 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -26.75 11.50 55.49 0.64 -26.11 16 19 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.15 3.33 6.82 -8.37 -0.06 3.27 16 24 C -0.15 -1.42 5.25 -26.74 -0.14 -1.56 16 25 C 0.52 6.08 7.41 -10.86 -0.08 6.00 16 26 O -0.53 -7.77 15.12 5.55 0.08 -7.68 16 27 H 0.07 0.74 6.80 -51.93 -0.35 0.39 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.01 7.01 -51.93 -0.36 0.65 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.64 8.00 -51.93 -0.42 0.22 16 37 H 0.07 0.52 6.03 -51.93 -0.31 0.20 16 38 H 0.08 0.99 6.17 -51.93 -0.32 0.67 16 39 H 0.12 2.48 7.29 -51.93 -0.38 2.10 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.63 6.97 -51.93 -0.36 0.26 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.03 0.67 6.54 -51.93 -0.34 0.33 16 44 H 0.08 1.94 7.12 -51.93 -0.37 1.57 16 45 H 0.11 0.89 7.30 -51.93 -0.38 0.51 16 46 H 0.11 1.18 7.89 -51.93 -0.41 0.77 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -33.48 360.95 -8.06 -41.54 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.24 Total: -0.91 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -0.33 Total: 11.53 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -1.07 Total: -57.47 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.17 Total: -16.90 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.48 -8.06 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042829151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.000 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds