Wall clock time and date at job start Tue Mar 31 2020 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.58970 * 2 1 4 4 C 1.53194 * 109.58759 * 120.42777 * 2 1 3 5 5 C 1.53034 * 109.31165 * 65.15589 * 4 2 1 6 6 H 1.09003 * 109.44783 * 301.34961 * 5 4 2 7 7 N 1.46506 * 109.46095 * 181.38457 * 5 4 2 8 8 C 1.36936 * 119.99902 * 154.92617 * 7 5 4 9 9 H 1.07989 * 120.00279 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99577 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00192 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99862 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47631 * 59.99854 * 12 10 8 14 14 H 1.48499 * 109.47109 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47131 * 299.99809 * 12 10 8 16 16 C 1.53042 * 109.54281 * 61.36460 * 5 4 2 17 17 C 1.53193 * 109.31086 * 298.63504 * 16 5 4 18 18 N 1.46924 * 108.77395 * 54.63212 * 17 16 5 19 19 C 1.34781 * 120.62983 * 126.37306 * 18 17 16 20 20 O 1.21277 * 120.00155 * 180.02562 * 19 18 17 21 21 C 1.50704 * 119.99721 * 359.97438 * 19 18 17 22 22 N 1.46499 * 109.46770 * 180.02562 * 21 19 18 23 23 C 1.46759 * 124.35334 * 269.72311 * 22 21 19 24 24 C 1.54658 * 105.38464 * 162.85508 * 23 22 21 25 25 C 1.54624 * 101.68299 * 25.77032 * 24 23 22 26 26 C 1.34423 * 124.35132 * 90.02786 * 22 21 19 27 27 O 1.21284 * 124.93728 * 0.38321 * 26 22 21 28 28 H 1.09001 * 109.47367 * 180.28361 * 1 2 3 29 29 H 1.09003 * 109.47462 * 300.27769 * 1 2 3 30 30 H 1.08995 * 109.47373 * 60.28415 * 1 2 3 31 31 H 1.08995 * 109.49611 * 305.20067 * 4 2 1 32 32 H 1.09007 * 109.49479 * 185.10512 * 4 2 1 33 33 H 0.96996 * 119.99678 * 334.93429 * 7 5 4 34 34 H 0.97000 * 119.99683 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.49903 * 58.58225 * 16 5 4 36 36 H 1.08995 * 109.49851 * 178.65512 * 16 5 4 37 37 H 1.08999 * 109.58588 * 174.41997 * 17 16 5 38 38 H 1.09000 * 109.58906 * 294.84638 * 17 16 5 39 39 H 1.08996 * 109.47150 * 300.00142 * 21 19 18 40 40 H 1.08992 * 109.46928 * 60.00452 * 21 19 18 41 41 H 1.09003 * 110.24881 * 281.99045 * 23 22 21 42 42 H 1.09006 * 110.24174 * 43.98508 * 23 22 21 43 43 H 1.08995 * 111.19326 * 267.59360 * 24 23 22 44 44 H 1.09006 * 110.85364 * 143.79273 * 24 23 22 45 45 H 1.08998 * 110.48355 * 216.30478 * 25 24 23 46 46 H 1.09003 * 110.59857 * 93.72381 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 1.6415 -2.2055 1.1673 6 1 0.5565 -2.2827 1.0963 7 7 2.1024 -2.9008 2.3717 8 6 1.4641 -4.0367 2.7931 9 1 0.6213 -4.4202 2.2374 10 6 1.9006 -4.6951 3.9345 11 7 2.9282 -4.2279 4.6115 12 14 1.0305 -6.2450 4.5090 13 1 1.1083 -7.2793 3.4463 14 1 1.6851 -6.7522 5.7416 15 1 -0.3935 -5.9359 4.7955 16 6 2.2801 -2.8463 -0.0671 17 6 1.7692 -2.1393 -1.3265 18 7 2.0225 -0.6980 -1.1954 19 6 2.6943 -0.0290 -2.1533 20 8 2.8974 1.1606 -2.0331 21 6 3.1940 -0.7593 -3.3731 22 7 3.8870 0.1821 -4.2561 23 6 3.2360 0.9451 -5.3275 24 6 4.2195 2.0874 -5.6736 25 6 5.5733 1.4757 -5.2446 26 6 5.2020 0.4537 -4.1930 27 8 5.9778 -0.0475 -3.4068 28 1 -0.3634 -1.0276 0.0051 29 1 -0.3634 0.5181 0.8875 30 1 -0.3634 0.5094 -0.8925 31 1 1.6075 -0.2811 2.1364 32 1 3.1297 -0.6519 1.2905 33 1 2.8596 -2.5565 2.8706 34 1 3.2329 -4.6879 5.4093 35 1 3.3640 -2.7473 -0.0088 36 1 2.0128 -3.9022 -0.1084 37 1 2.2944 -2.5247 -2.2004 38 1 0.6987 -2.3138 -1.4347 39 1 3.8840 -1.5461 -3.0682 40 1 2.3503 -1.2012 -3.9030 41 1 3.0712 0.3090 -6.1972 42 1 2.2900 1.3570 -4.9759 43 1 3.9977 2.9862 -5.0982 44 1 4.2082 2.2985 -6.7429 45 1 6.2207 2.2426 -4.8195 46 1 6.0611 0.9923 -6.0911 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044455046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:56 Heat of formation + Delta-G solvation = -77.620094 kcal Electronic energy + Delta-G solvation = -26500.526021 eV Core-core repulsion = 22810.303281 eV Total energy + Delta-G solvation = -3690.222740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81685 -40.90738 -38.89829 -37.42307 -36.24190 -34.39532 -33.67498 -33.10964 -31.07054 -28.78664 -28.45612 -28.32427 -25.96054 -24.42641 -23.39100 -22.75670 -22.05003 -20.43127 -19.69660 -18.96662 -18.56423 -17.79733 -17.47321 -16.86517 -16.65642 -16.35496 -16.03036 -15.67463 -15.34446 -14.99445 -14.90799 -14.76283 -14.62249 -14.39515 -14.06212 -13.99128 -13.79345 -13.34403 -13.19126 -13.03801 -12.95951 -12.83320 -12.72426 -12.46526 -12.29046 -12.22338 -12.09681 -11.98019 -11.89227 -11.70485 -11.17588 -11.08704 -10.92780 -10.86193 -9.74932 -9.69813 -9.01705 -7.92740 -5.22175 1.37567 1.47825 1.50993 1.52687 1.56952 1.84593 2.19513 2.57096 3.39740 3.41936 3.43242 3.64417 3.76119 3.84736 3.98735 4.07270 4.08335 4.12330 4.20909 4.23441 4.27553 4.34203 4.51450 4.56938 4.61633 4.67966 4.71799 4.75035 4.83182 4.88278 5.00316 5.03497 5.04905 5.08783 5.22682 5.25013 5.31386 5.42082 5.51939 5.54729 5.63241 6.06809 6.28094 6.37684 7.03470 7.13106 7.33671 8.09403 8.32607 9.31055 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.002977 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.277629 B = 9402.831105 C = 9799.200819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.125 4.125 5 C 0.176 3.824 6 H 0.061 0.939 7 N -0.740 5.740 8 C -0.234 4.234 9 H 0.083 0.917 10 C -0.081 4.081 11 N -0.975 5.975 12 Si 0.973 3.027 13 H -0.276 1.276 14 H -0.301 1.301 15 H -0.276 1.276 16 C -0.145 4.145 17 C 0.113 3.887 18 N -0.600 5.600 19 C 0.493 3.507 20 O -0.579 6.579 21 C 0.106 3.894 22 N -0.607 5.607 23 C 0.099 3.901 24 C -0.120 4.120 25 C -0.147 4.147 26 C 0.500 3.500 27 O -0.592 6.592 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.367 0.633 34 H 0.249 0.751 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.156 0.844 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 10.721 -26.926 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.097 0.903 4 C -0.164 4.164 5 C 0.068 3.932 6 H 0.079 0.921 7 N -0.379 5.379 8 C -0.366 4.366 9 H 0.101 0.899 10 C -0.273 4.273 11 N -0.626 5.626 12 Si 0.803 3.197 13 H -0.202 1.202 14 H -0.228 1.228 15 H -0.202 1.202 16 C -0.186 4.186 17 C -0.010 4.010 18 N -0.333 5.333 19 C 0.281 3.719 20 O -0.459 6.459 21 C -0.020 4.020 22 N -0.339 5.339 23 C -0.023 4.023 24 C -0.157 4.157 25 C -0.187 4.187 26 C 0.290 3.710 27 O -0.473 6.473 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.198 0.802 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.173 0.827 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.146 0.854 45 H 0.116 0.884 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.610 10.895 -26.423 28.951 hybrid contribution 0.458 -0.814 1.687 1.929 sum -4.152 10.081 -24.736 27.032 Atomic orbital electron populations 1.22046 0.92634 1.03206 1.02826 1.21034 0.95617 0.95912 0.83164 0.90317 1.22086 0.99805 0.96606 0.97881 1.20426 0.97173 0.89589 0.85987 0.92119 1.42708 1.37387 1.29301 1.28514 1.19620 1.09760 1.01201 1.05970 0.89905 1.25607 0.99699 1.02990 0.99015 1.69840 1.29645 1.43053 1.20061 0.85207 0.77840 0.79675 0.77027 1.20155 1.22810 1.20179 1.22494 0.99731 1.00538 0.95865 1.21969 1.02900 0.77691 0.98407 1.48347 1.54843 1.10180 1.19892 1.21730 0.77022 0.87674 0.85503 1.90644 1.58414 1.17201 1.79665 1.21413 1.00139 0.91361 0.89040 1.48106 1.08673 1.43524 1.33562 1.22473 0.96972 0.93511 0.89294 1.22654 0.91290 0.97073 1.04719 1.22358 1.00547 0.97556 0.98231 1.21916 0.82134 0.82460 0.84446 1.90710 1.55801 1.57222 1.43577 0.91273 0.90935 0.91494 0.91156 0.94393 0.80184 0.94249 0.94579 0.91032 0.87355 0.88386 0.87728 0.82663 0.87383 0.90258 0.90822 0.85385 0.88379 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.03 71.98 0.65 -2.76 16 2 C 0.15 4.22 3.21 44.97 0.14 4.37 16 3 H 0.08 2.54 7.00 -2.39 -0.02 2.52 16 4 C -0.12 -4.36 5.02 30.67 0.15 -4.21 16 5 C 0.18 6.66 2.52 45.02 0.11 6.78 16 6 H 0.06 2.20 6.43 -2.39 -0.02 2.18 16 7 N -0.74 -37.24 5.12 -322.81 -1.65 -38.89 16 8 C -0.23 -12.67 9.93 84.03 0.83 -11.84 16 9 H 0.08 4.18 7.83 -2.92 -0.02 4.16 16 10 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 11 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 12 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 14 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 C -0.15 -4.73 5.66 30.67 0.17 -4.55 16 17 C 0.11 2.47 5.93 86.36 0.51 2.98 16 18 N -0.60 -15.71 2.68 -795.03 -2.13 -17.85 16 19 C 0.49 13.65 7.77 87.66 0.68 14.33 16 20 O -0.58 -20.54 15.84 -3.02 -0.05 -20.59 16 21 C 0.11 2.11 4.76 85.63 0.41 2.51 16 22 N -0.61 -12.23 2.42 -821.98 -1.99 -14.22 16 23 C 0.10 1.04 7.35 86.89 0.64 1.68 16 24 C -0.12 -1.03 7.19 31.71 0.23 -0.81 16 25 C -0.15 -2.11 6.86 30.58 0.21 -1.90 16 26 C 0.50 12.93 8.02 87.89 0.70 13.64 16 27 O -0.59 -22.10 17.59 -3.04 -0.05 -22.15 16 28 H 0.07 1.54 5.72 -2.39 -0.01 1.53 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.37 20.58 7.80 -92.71 -0.72 19.86 16 34 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.11 1.71 5.93 -2.39 -0.01 1.69 16 38 H 0.10 1.71 7.50 -2.39 -0.02 1.69 16 39 H 0.10 2.30 7.47 -2.39 -0.02 2.28 16 40 H 0.16 1.55 7.94 -2.39 -0.02 1.53 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.13 0.18 8.14 -2.38 -0.02 0.16 16 45 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -82.83 365.97 2.61 -80.22 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.26 Total: 30.10 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 5.92 Total: 16.01 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -5.49 Total: -131.40 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.10 Total: -42.74 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -82.83 2.61 -80.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044455046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.598 kcal (2) G-P(sol) polarization free energy of solvation -82.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds