Wall clock time and date at job start Tue Mar 31 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.70507 * 2 1 4 4 C 1.53073 * 109.67149 * 120.51188 * 2 1 3 5 5 C 1.50179 * 109.89367 * 168.63588 * 4 2 1 6 6 O 1.21280 * 118.24642 * 162.44301 * 5 4 2 7 7 N 1.33358 * 123.50372 * 342.41284 * 5 4 2 8 8 C 1.45752 * 124.10720 * 2.22854 * 7 5 4 9 9 H 1.09004 * 109.30231 * 101.02923 * 8 7 5 10 10 C 1.50698 * 109.30074 * 220.61009 * 8 7 5 11 11 O 1.21288 * 119.99866 * 20.00168 * 10 8 7 12 12 N 1.34771 * 120.00213 * 200.00053 * 10 8 7 13 13 C 1.46499 * 120.00109 * 5.05282 * 12 10 8 14 14 C 1.46505 * 120.00299 * 184.77393 * 12 10 8 15 15 C 1.53005 * 109.47064 * 268.69536 * 14 12 10 16 16 H 1.08992 * 112.96378 * 65.18747 * 15 14 12 17 17 C 1.53939 * 113.76731 * 293.51013 * 15 14 12 18 18 C 1.53949 * 86.29062 * 222.09268 * 17 15 14 19 19 N 1.47574 * 113.76603 * 197.01284 * 15 14 12 20 20 C 1.36939 * 134.49625 * 318.94651 * 19 15 14 21 21 H 1.07999 * 120.00148 * 355.12867 * 20 19 15 22 22 C 1.38808 * 120.00189 * 175.13534 * 20 19 15 23 23 N 1.31621 * 120.00284 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00318 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47248 * 59.99304 * 24 22 20 26 26 H 1.48500 * 109.47499 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.47000 * 299.99804 * 24 22 20 28 28 C 1.52921 * 110.48803 * 340.92226 * 8 7 5 29 29 H 1.09001 * 109.47266 * 299.48856 * 1 2 3 30 30 H 1.09001 * 109.46641 * 59.48762 * 1 2 3 31 31 H 1.08994 * 109.47486 * 179.48742 * 1 2 3 32 32 H 1.08999 * 109.40286 * 48.50142 * 4 2 1 33 33 H 1.08997 * 109.33392 * 288.71719 * 4 2 1 34 34 H 0.97000 * 117.94043 * 182.24534 * 7 5 4 35 35 H 1.08998 * 109.47225 * 269.72315 * 13 12 10 36 36 H 1.09005 * 109.46913 * 29.72122 * 13 12 10 37 37 H 1.08998 * 109.47675 * 149.72397 * 13 12 10 38 38 H 1.08996 * 109.46910 * 28.69412 * 14 12 10 39 39 H 1.08995 * 109.47251 * 148.69185 * 14 12 10 40 40 H 1.09001 * 113.74767 * 336.43715 * 17 15 14 41 41 H 1.09003 * 113.74345 * 107.64330 * 17 15 14 42 42 H 1.09000 * 113.76865 * 137.90606 * 18 17 15 43 43 H 1.08996 * 113.77243 * 269.19418 * 18 17 15 44 44 H 0.97001 * 120.00885 * 180.02562 * 23 22 20 45 45 H 1.09004 * 109.59917 * 170.50978 * 28 8 7 46 46 H 1.09001 * 109.60176 * 290.99773 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0453 -0.7318 1.2418 5 6 3.5210 -0.9792 1.1136 6 8 4.1472 -1.2479 2.1168 7 7 4.1794 -0.9199 -0.0446 8 6 3.5643 -0.5640 -1.3172 9 1 3.7970 0.4747 -1.5519 10 6 4.1130 -1.4547 -2.4019 11 8 4.6376 -2.5094 -2.1130 12 7 4.0207 -1.0794 -3.6930 13 6 3.4881 0.2417 -4.0355 14 6 4.4585 -1.9901 -4.7538 15 6 5.9302 -1.7253 -5.0779 16 1 6.5972 -1.9600 -4.2485 17 6 6.1878 -0.3455 -5.7100 18 6 7.1515 -1.0737 -6.6644 19 7 6.3648 -2.2876 -6.3713 20 6 6.1317 -3.4632 -7.0337 21 1 5.5624 -4.2477 -6.5573 22 6 6.6271 -3.6468 -8.3172 23 7 7.3206 -2.6907 -8.8980 24 14 6.3098 -5.2508 -9.2205 25 1 4.8463 -5.4545 -9.3682 26 1 6.9396 -5.1953 -10.5642 27 1 6.8908 -6.3777 -8.4471 28 6 2.0463 -0.7334 -1.2438 29 1 -0.3634 0.5059 0.8945 30 1 -0.3633 0.5218 -0.8854 31 1 -0.3634 -1.0275 -0.0092 32 1 1.5257 -1.6847 1.3422 33 1 1.8560 -0.1215 2.1248 34 1 5.1271 -1.1267 -0.0398 35 1 2.4088 0.1742 -4.1721 36 1 3.7093 0.9425 -3.2304 37 1 3.9499 0.5915 -4.9588 38 1 4.3398 -3.0207 -4.4197 39 1 3.8546 -1.8256 -5.6461 40 1 5.3156 0.0793 -6.2070 41 1 6.6802 0.3592 -5.0399 42 1 7.0782 -0.7421 -7.7002 43 1 8.1790 -1.1162 -6.3032 44 1 7.6666 -2.8187 -9.7952 45 1 1.5873 -0.3077 -2.1361 46 1 1.7995 -1.7927 -1.1725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085601936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:10 Heat of formation + Delta-G solvation = -17.148767 kcal Electronic energy + Delta-G solvation = -26451.150720 eV Core-core repulsion = 22763.550213 eV Total energy + Delta-G solvation = -3687.600506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07937 -39.52740 -37.92994 -36.88477 -35.36694 -34.28632 -32.17761 -30.60089 -28.57999 -28.20887 -27.86864 -26.56536 -24.76310 -23.36536 -22.40132 -21.77171 -19.65715 -19.48409 -19.03849 -17.52861 -17.31224 -16.75097 -16.62282 -15.81467 -15.61799 -15.19822 -14.81773 -14.65641 -14.37735 -14.07906 -13.78324 -13.56062 -13.48486 -13.14335 -12.90553 -12.61714 -12.52774 -12.38569 -12.17576 -12.05973 -11.77027 -11.43597 -11.30159 -11.20764 -11.06033 -10.90387 -10.71133 -10.50271 -10.20429 -9.89114 -9.82622 -9.76091 -9.61544 -9.16499 -8.77981 -8.47483 -6.87593 -5.75729 -3.09680 2.40388 2.45440 2.83334 3.20518 3.39563 3.44320 3.45192 4.08514 4.16392 4.21693 4.30059 4.45519 4.50872 4.69397 4.94947 5.03084 5.10070 5.15462 5.16855 5.22173 5.29837 5.35525 5.38130 5.44789 5.52104 5.54394 5.63952 5.69856 5.76266 5.83480 5.91404 6.13750 6.22532 6.35711 6.49658 6.54488 6.67420 6.76854 7.09777 7.24151 7.38056 7.45173 7.59241 7.99404 8.00148 8.13517 9.05127 9.71563 10.60488 11.40135 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.002972 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.207659 B = 9419.279650 C = 9450.212486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.132 4.132 5 C 0.524 3.476 6 O -0.557 6.557 7 N -0.699 5.699 8 C 0.124 3.876 9 H 0.100 0.900 10 C 0.497 3.503 11 O -0.525 6.525 12 N -0.600 5.600 13 C 0.069 3.931 14 C 0.117 3.883 15 C 0.130 3.870 16 H 0.046 0.954 17 C -0.159 4.159 18 C 0.155 3.845 19 N -0.601 5.601 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 C -0.123 4.123 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.406 0.594 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.022 0.978 44 H 0.254 0.746 45 H 0.093 0.907 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.836 12.005 14.358 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.311 3.689 6 O -0.435 6.435 7 N -0.352 5.352 8 C 0.015 3.985 9 H 0.117 0.883 10 C 0.282 3.718 11 O -0.401 6.401 12 N -0.333 5.333 13 C -0.074 4.074 14 C -0.006 4.006 15 C 0.022 3.978 16 H 0.064 0.936 17 C -0.197 4.197 18 C 0.030 3.970 19 N -0.327 5.327 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.161 4.161 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.243 0.757 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.112 0.888 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.443 11.117 14.726 23.431 hybrid contribution 0.430 -1.023 -0.740 1.334 sum -14.013 10.094 13.986 22.223 Atomic orbital electron populations 1.21809 0.93651 1.02500 1.02404 1.21265 0.96871 0.99780 0.93283 0.89894 1.21773 0.91767 1.03491 1.00142 1.20132 0.90363 0.75959 0.82444 1.90773 1.68386 1.49165 1.35180 1.45272 1.13851 1.69936 1.06126 1.20965 0.94979 0.98929 0.83605 0.88271 1.20650 0.80125 0.87291 0.83694 1.90773 1.43229 1.24120 1.81930 1.47818 1.62453 1.17277 1.05758 1.22027 0.99001 0.83607 1.02789 1.21845 0.96806 0.93386 0.88527 1.22515 0.92822 0.91812 0.90622 0.93649 1.23799 1.00812 0.95661 0.99424 1.22274 0.91986 0.84262 0.98489 1.46009 1.54190 1.17099 1.15440 1.18973 1.29208 0.91408 0.95546 0.90491 1.24763 1.00396 0.98150 0.96945 1.69804 1.40141 1.32250 1.14589 0.86228 0.77767 0.82972 0.78961 1.21064 1.21578 1.21195 1.21946 0.91424 1.02941 0.99809 0.92065 0.91934 0.92206 0.87992 0.87964 0.75728 0.92396 0.91261 0.89746 0.90398 0.89705 0.90848 0.93411 0.90341 0.96004 0.93648 0.88805 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.20 37.16 0.34 -0.27 16 2 C -0.09 -0.51 2.80 -90.41 -0.25 -0.77 16 3 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 4 C -0.13 -1.01 5.35 -28.10 -0.15 -1.16 16 5 C 0.52 6.23 7.71 -11.87 -0.09 6.14 16 6 O -0.56 -9.01 17.78 5.56 0.10 -8.92 16 7 N -0.70 -7.94 4.79 -55.99 -0.27 -8.20 16 8 C 0.12 1.14 2.78 -69.53 -0.19 0.95 16 9 H 0.10 0.67 6.21 -51.93 -0.32 0.34 16 10 C 0.50 6.66 6.82 -10.99 -0.07 6.58 16 11 O -0.53 -9.57 15.98 5.55 0.09 -9.49 16 12 N -0.60 -7.61 2.83 -181.57 -0.51 -8.12 16 13 C 0.07 0.56 9.42 59.85 0.56 1.13 16 14 C 0.12 2.01 5.33 -4.04 -0.02 1.98 16 15 C 0.13 2.62 4.58 -66.87 -0.31 2.32 16 16 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.16 -2.82 6.83 -25.81 -0.18 -3.00 16 18 C 0.15 3.61 7.64 -2.97 -0.02 3.58 16 19 N -0.60 -15.14 3.57 -170.75 -0.61 -15.75 16 20 C -0.22 -6.22 10.51 -15.06 -0.16 -6.38 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -27.07 11.30 55.49 0.63 -26.45 16 24 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C -0.12 -0.85 4.50 -26.60 -0.12 -0.97 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.41 5.16 8.44 -40.82 -0.34 4.82 16 35 H 0.06 0.36 7.70 -51.93 -0.40 -0.04 16 36 H 0.07 0.39 6.01 -51.93 -0.31 0.08 16 37 H 0.08 0.76 5.85 -51.93 -0.30 0.45 16 38 H 0.08 1.51 7.45 -51.93 -0.39 1.12 16 39 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 40 H 0.07 1.20 6.72 -51.93 -0.35 0.85 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 2.00 6.94 -51.93 -0.36 1.64 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.09 0.48 7.19 -51.93 -0.37 0.11 16 46 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -35.55 364.16 -8.21 -43.76 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.34 Total: 0.67 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -0.76 Total: 9.87 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.76 Total: -58.52 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.19 Total: -18.40 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.55 -8.21 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085601936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.615 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds